Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99972 * 2 1 4 4 H 1.48501 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47361 * 299.99835 * 3 2 1 6 6 H 1.48501 * 109.47491 * 60.00317 * 3 2 1 7 7 C 1.37881 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99555 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00302 * 359.97438 * 7 2 1 10 10 O 1.42891 * 109.47131 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99823 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47256 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47003 * 65.00164 * 12 11 10 14 14 C 1.34222 * 117.00094 * 180.02562 * 13 12 11 15 15 O 1.20821 * 120.00135 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99985 * 179.97438 * 14 13 12 17 17 H 1.09006 * 109.46774 * 60.00058 * 16 14 13 18 18 C 1.53005 * 109.47035 * 179.97438 * 16 14 13 19 19 C 1.53000 * 109.47151 * 180.02562 * 18 16 14 20 20 C 1.53004 * 109.46982 * 300.00431 * 19 18 16 21 21 C 1.52995 * 109.47540 * 59.99824 * 20 19 18 22 22 H 1.08997 * 109.47714 * 180.02562 * 21 20 19 23 23 F 1.39902 * 109.46919 * 59.99760 * 21 20 19 24 24 C 1.52992 * 109.47503 * 299.99915 * 16 14 13 25 25 H 0.96993 * 119.99882 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46616 * 59.99939 * 9 7 2 27 27 H 1.08997 * 109.47141 * 300.00383 * 9 7 2 28 28 H 1.09004 * 109.46868 * 60.00838 * 11 10 9 29 29 H 1.08992 * 109.47403 * 300.00259 * 11 10 9 30 30 H 1.08993 * 109.46955 * 185.00422 * 12 11 10 31 31 H 1.09000 * 109.47050 * 305.00250 * 12 11 10 32 32 H 1.08994 * 109.47204 * 300.00230 * 18 16 14 33 33 H 1.08998 * 109.47065 * 60.00332 * 18 16 14 34 34 H 1.09003 * 109.47442 * 59.99921 * 19 18 16 35 35 H 1.08999 * 109.47190 * 180.02562 * 19 18 16 36 36 H 1.09005 * 109.47344 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.46985 * 299.99705 * 20 19 18 38 38 H 1.09006 * 109.47223 * 299.99868 * 24 16 14 39 39 H 1.08999 * 109.47182 * 59.99783 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5651 -4.8754 0.0031 12 6 2.6481 -5.9563 0.0033 13 8 3.4002 -5.8875 1.2435 14 6 4.3950 -6.7744 1.4028 15 8 4.6293 -7.5818 0.5350 16 6 5.2197 -6.7631 2.6641 17 1 4.5718 -6.9369 3.5233 18 6 6.2771 -7.8666 2.5919 19 6 7.1140 -7.8556 3.8727 20 6 7.8031 -6.4975 4.0200 21 6 6.7457 -5.3941 4.0922 22 1 7.2366 -4.4266 4.1966 23 9 5.9138 -5.6170 5.1947 24 6 5.9084 -5.4049 2.8111 25 1 -0.4849 0.8400 0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6247 -2.5564 0.8919 28 1 0.9441 -4.9831 -0.8862 29 1 0.9459 -4.9818 0.8938 30 1 2.1820 -6.9376 -0.0851 31 1 3.3210 -5.7965 -0.8391 32 1 5.7862 -8.8341 2.4874 33 1 6.9250 -7.6932 1.7327 34 1 6.4659 -8.0291 4.7317 35 1 7.8676 -8.6414 3.8210 36 1 8.3997 -6.4898 4.9322 37 1 8.4513 -6.3239 3.1610 38 1 6.5563 -5.2312 1.9519 39 1 5.1548 -4.6191 2.8627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326632886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = -231.433014 kcal Electronic energy + Delta-G solvation = -21388.880454 eV Core-core repulsion = 17823.194588 eV Total energy + Delta-G solvation = -3565.685865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.61219 -41.74842 -39.03122 -38.34652 -37.33563 -34.95999 -32.65764 -31.44307 -31.36862 -29.04268 -25.61880 -24.56089 -23.79191 -23.42313 -21.92871 -20.63185 -18.86014 -18.71412 -17.97516 -17.94981 -17.24540 -16.64326 -16.50029 -16.37395 -16.10137 -16.02795 -15.61284 -15.16431 -14.49302 -14.38531 -14.15968 -13.69997 -13.60111 -13.31221 -13.19605 -12.99441 -12.88297 -12.73386 -12.57924 -12.47271 -12.22123 -12.00214 -11.82568 -11.76516 -11.61059 -11.28123 -11.11539 -11.06632 -10.90608 -10.29406 -8.33442 -6.45739 1.07345 1.40223 1.41520 1.56114 1.61955 2.33872 3.00749 3.03505 3.33565 3.47396 3.59944 3.82857 3.89638 3.92031 4.00610 4.07047 4.12273 4.25575 4.30415 4.38999 4.46197 4.49840 4.62999 4.65685 4.83419 4.90334 4.95437 5.05667 5.10571 5.15172 5.18241 5.24399 5.38734 5.45175 5.53413 5.93580 6.47700 6.64683 6.77940 7.26021 8.79151 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.003968 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.635188 B = 7054.789058 C = 8142.875019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.207 3.793 10 O -0.408 6.408 11 C 0.053 3.947 12 C 0.077 3.923 13 O -0.358 6.358 14 C 0.464 3.536 15 O -0.534 6.534 16 C -0.076 4.076 17 H 0.115 0.885 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.145 4.145 21 C 0.092 3.908 22 H 0.105 0.895 23 F -0.226 7.226 24 C -0.141 4.141 25 H 0.271 0.729 26 H -0.008 1.008 27 H -0.011 1.011 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.417 -15.111 7.783 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.023 4.023 12 C 0.003 3.997 13 O -0.275 6.275 14 C 0.309 3.691 15 O -0.424 6.424 16 C -0.095 4.095 17 H 0.133 0.867 18 C -0.137 4.137 19 C -0.153 4.153 20 C -0.182 4.182 21 C 0.056 3.944 22 H 0.123 0.877 23 F -0.207 7.207 24 C -0.179 4.179 25 H 0.080 0.920 26 H 0.010 0.990 27 H 0.006 0.994 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.474 -15.206 7.523 22.300 hybrid contribution -0.747 0.723 -0.320 1.088 sum 13.727 -14.483 7.204 21.215 Atomic orbital electron populations 1.70065 1.07733 1.28658 1.50453 1.25948 0.95963 1.03345 0.93840 0.85138 0.78675 0.77294 0.78323 1.18821 1.19597 1.19608 1.21409 0.94102 0.90845 1.52345 0.92096 1.19880 0.88585 0.84436 0.93834 1.87855 1.35512 1.14157 1.95321 1.22642 0.94517 0.83405 1.01760 1.23192 0.93183 0.99105 0.84186 1.86610 1.44131 1.55021 1.41691 1.24282 0.78449 0.76938 0.89465 1.90612 1.68477 1.38832 1.44453 1.21162 0.96677 0.99022 0.92659 0.86666 1.21471 0.96013 0.96636 0.99613 1.21516 0.99425 0.97812 0.96524 1.22201 0.97256 0.93735 1.05007 1.21732 0.89612 1.01825 0.81246 0.87678 1.92779 1.74905 1.96458 1.56542 1.22161 1.00601 0.95524 0.99597 0.91980 0.99030 0.99372 0.89992 0.92709 0.87454 0.90966 0.90995 0.90960 0.91486 0.88934 0.89095 0.88495 0.88756 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.98 44.23 29.54 68.60 2.03 46.26 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -32.90 9.43 25.60 0.24 -32.66 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.70 5.69 71.24 0.41 12.10 16 10 O -0.41 -20.24 10.30 -145.58 -1.50 -21.74 16 11 C 0.05 1.98 6.33 71.98 0.46 2.43 16 12 C 0.08 2.44 5.85 71.98 0.42 2.86 16 13 O -0.36 -12.12 10.09 -48.70 -0.49 -12.61 16 14 C 0.46 13.66 7.26 71.24 0.52 14.18 16 15 O -0.53 -17.32 15.73 21.98 0.35 -16.97 16 16 C -0.08 -1.70 2.50 -11.54 -0.03 -1.73 16 17 H 0.12 2.51 7.80 -2.38 -0.02 2.49 16 18 C -0.10 -1.76 4.49 30.60 0.14 -1.63 16 19 C -0.12 -1.50 5.80 30.60 0.18 -1.32 16 20 C -0.14 -1.73 5.72 30.59 0.17 -1.55 16 21 C 0.09 1.56 4.13 30.61 0.13 1.69 16 22 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 23 F -0.23 -5.04 16.04 44.97 0.72 -4.32 16 24 C -0.14 -3.01 4.93 30.61 0.15 -2.86 16 25 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 26 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 27 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.11 2.76 8.13 -2.39 -0.02 2.74 16 31 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 32 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 33 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.07 0.95 7.80 -2.39 -0.02 0.93 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 Total: -1.00 -70.63 329.48 5.65 -64.98 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.02 Total: 7.42 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 3.24 Total: -7.59 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -1.64 Total: -51.32 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.72 Total: -4.32 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -70.63 5.65 -64.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326632886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.449 kcal (2) G-P(sol) polarization free energy of solvation -70.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds