Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.34663 * 2 1 4 4 O 1.44316 * 110.39209 * 122.29959 * 2 1 3 5 Xx 1.43465 * 104.66294 * 142.48524 * 4 2 1 6 5 C 1.56996 * 127.55920 * 140.14939 * 5 4 2 7 6 C 1.39735 * 120.00152 * 359.72869 * 6 5 4 8 7 C 1.38342 * 120.38179 * 179.71615 * 7 6 5 9 8 C 1.37759 * 120.39087 * 0.56033 * 8 7 6 10 9 C 1.40751 * 119.99372 * 359.71407 * 9 8 7 11 10 C 1.41437 * 120.18950 * 179.97438 * 10 9 8 12 11 H 1.08000 * 119.99591 * 204.51259 * 11 10 9 13 12 C 1.39934 * 119.99952 * 24.51029 * 11 10 9 14 13 N 1.30832 * 119.99968 * 17.88264 * 13 11 10 15 14 Si 1.86797 * 120.00161 * 197.87439 * 13 11 10 16 15 H 1.48499 * 109.46956 * 90.00156 * 15 13 11 17 16 H 1.48498 * 109.47437 * 210.00193 * 15 13 11 18 17 H 1.48509 * 109.47154 * 330.00440 * 15 13 11 19 18 C 1.38807 * 120.00784 * 179.97438 * 6 5 4 20 19 O 1.43472 * 104.89027 * 320.41089 * 5 4 2 21 20 C 1.44322 * 104.66167 * 39.58598 * 20 5 4 22 21 C 1.52992 * 110.39541 * 217.51744 * 21 20 5 23 22 C 1.53004 * 110.48512 * 95.17902 * 21 20 5 24 23 H 1.08998 * 109.47015 * 299.15288 * 1 2 3 25 24 H 1.08996 * 109.47071 * 59.15472 * 1 2 3 26 25 H 1.09004 * 109.46771 * 179.15267 * 1 2 3 27 26 H 1.09007 * 109.47219 * 180.84271 * 3 2 1 28 27 H 1.09002 * 109.47242 * 300.84393 * 3 2 1 29 28 H 1.09001 * 109.47476 * 60.84818 * 3 2 1 30 29 H 1.08006 * 119.80411 * 359.97149 * 7 6 5 31 30 H 1.08006 * 119.80109 * 180.27276 * 8 7 6 32 31 H 1.07998 * 120.00234 * 179.70031 * 9 8 7 33 32 H 0.97001 * 119.99938 * 179.97438 * 14 13 11 34 33 H 1.08001 * 120.18952 * 0.02945 * 19 6 5 35 34 H 1.09005 * 109.47439 * 175.27824 * 22 21 20 36 35 H 1.09001 * 109.47715 * 295.28435 * 22 21 20 37 36 H 1.09007 * 109.46822 * 55.27784 * 22 21 20 38 37 H 1.09002 * 109.47264 * 304.66747 * 23 21 20 39 38 H 1.09002 * 109.47141 * 64.66505 * 23 21 20 40 39 H 1.09000 * 109.46988 * 184.66565 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4345 0.0000 4 8 2.0329 -0.7228 1.1434 5 6 4.5616 -1.6244 1.3922 6 6 4.7529 -1.1021 2.6740 7 6 5.9551 -1.2877 3.3329 8 6 6.9815 -1.9797 2.7285 9 6 6.8083 -2.5078 1.4354 10 6 7.8596 -3.2184 0.8107 11 1 7.9046 -3.2794 -0.2667 12 6 8.8413 -3.8425 1.5885 13 7 8.6202 -4.0766 2.8565 14 14 10.4674 -4.3413 0.8163 15 1 11.4363 -3.2224 0.9364 16 1 11.0021 -5.5365 1.5169 17 1 10.2565 -4.6616 -0.6184 18 6 5.5849 -2.3247 0.7684 19 8 2.8256 -1.8660 -0.6564 20 6 2.0674 -0.7751 -1.2203 21 6 0.9090 -1.3108 -2.0639 22 6 2.9710 0.1237 -2.0670 23 1 -0.3633 0.5006 0.8975 24 1 -0.3633 0.5269 -0.8823 25 1 -0.3633 -1.0276 -0.0152 26 1 3.1518 1.4179 -0.0151 27 1 1.6943 1.9584 -0.8823 28 1 1.7190 1.9493 0.8975 29 1 3.9561 -0.5539 3.1547 30 1 6.0912 -0.8837 4.3253 31 1 7.9191 -2.1167 3.2467 32 1 9.3005 -4.5095 3.3956 33 1 5.4421 -2.7260 -0.2241 34 1 0.2982 -0.4782 -2.4130 35 1 1.3051 -1.8553 -2.9211 36 1 0.2983 -1.9808 -1.4587 37 1 3.8127 0.4642 -1.4639 38 1 3.3420 -0.4383 -2.9241 39 1 2.4020 0.9853 -2.4162 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169743573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = 116.498033 kcal Electronic energy + Delta-G solvation = -19610.506317 eV Core-core repulsion = 16605.247500 eV Total energy + Delta-G solvation = -3005.258817 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 263.143 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -38.36137 -36.73742 -35.28623 -31.31154 -31.24676 -29.34971 -28.95971 -27.92969 -27.15308 -26.75174 -24.49046 -21.64697 -21.27487 -20.71455 -18.29057 -16.72826 -16.30475 -15.49857 -14.43485 -14.36678 -14.23640 -14.01566 -13.39470 -13.19580 -12.94597 -12.40162 -12.37009 -12.05615 -11.93588 -11.70275 -11.47983 -11.35229 -11.29623 -11.06261 -10.97537 -10.91214 -10.53539 -10.40626 -10.39337 -9.86465 -9.62056 -9.50313 -8.72333 -8.38903 -7.96988 -7.14371 -6.98836 -6.20669 -5.63169 -3.27778 0.12579 1.74281 2.11728 2.29837 2.31051 2.45726 2.79352 3.24486 4.68454 5.20118 5.49117 5.83692 5.88032 5.99931 6.07594 6.10051 6.16240 6.18655 6.28857 6.34881 6.41805 6.44146 6.47687 6.62003 6.65065 6.69008 6.69771 6.70541 6.79088 6.82156 6.89949 7.02437 7.07337 7.12132 7.21061 7.29416 7.58156 7.65965 7.78567 7.86243 8.23857 8.67988 9.26181 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.004481 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.100541 B = 6247.423481 C = 6798.240511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.118 3.882 3 C -0.149 4.149 4 O -0.566 6.566 5 C 0.075 3.925 6 C -0.111 4.111 7 C -0.131 4.131 8 C -0.106 4.106 9 C -0.014 4.014 10 C -0.140 4.140 11 H 0.130 0.870 12 C -0.017 4.017 13 N -0.646 5.646 14 Si 0.952 3.048 15 H -0.249 1.249 16 H -0.257 1.257 17 H -0.242 1.242 18 C -0.125 4.125 19 O -0.563 6.563 20 C 0.118 3.882 21 C -0.131 4.131 22 C -0.148 4.148 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.321 0.679 33 H 0.133 0.867 34 H 0.040 0.960 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.034 0.966 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.683 -0.224 -0.078 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.064 3.936 3 C -0.206 4.206 4 O -0.502 6.502 5 C 0.059 3.941 6 C -0.130 4.130 7 C -0.150 4.150 8 C -0.124 4.124 9 C -0.017 4.017 10 C -0.160 4.160 11 H 0.147 0.853 12 C -0.240 4.240 13 N -0.278 5.278 14 Si 0.770 3.230 15 H -0.173 1.173 16 H -0.180 1.180 17 H -0.165 1.165 18 C -0.143 4.143 19 O -0.499 6.499 20 C 0.064 3.936 21 C -0.188 4.188 22 C -0.206 4.206 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.147 0.853 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.151 0.849 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.858 -0.644 0.371 9.886 hybrid contribution 0.271 0.121 -0.284 0.410 sum 10.129 -0.523 0.087 10.143 Atomic orbital electron populations 1.22174 0.97087 1.00701 0.98884 1.21687 0.89492 0.88966 0.93471 1.22356 1.01043 0.98774 0.98451 1.95049 1.60602 1.66567 1.28019 1.34053 0.85489 0.86658 0.87930 1.21812 0.95745 0.99504 0.95908 1.21144 0.93072 1.01210 0.99560 1.21697 0.99813 0.97141 0.93726 1.18270 0.91583 0.97475 0.94359 1.22144 0.92957 1.02482 0.98401 0.85260 1.27028 1.04350 0.97096 0.95483 1.69787 1.36523 1.15263 1.06224 0.85462 0.76104 0.80184 0.81243 1.17325 1.18027 1.16458 1.22172 0.90688 0.99155 1.02285 1.95054 1.71079 1.35142 1.48632 1.21690 0.91088 0.92358 0.88497 1.22175 0.98518 0.99522 0.98606 1.22355 1.00277 0.98824 0.99158 0.94244 0.94168 0.92903 0.93161 0.94670 0.94614 0.85276 0.86169 0.85028 0.86609 0.84899 0.94103 0.94256 0.92919 0.93184 0.94656 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 7.78 37.16 0.29 -2.66 16 2 C 0.12 3.07 1.57 -89.98 -0.14 2.93 16 3 C -0.15 -3.40 7.79 37.16 0.29 -3.11 16 4 O -0.57 -17.49 14.19 -59.50 -0.84 -18.34 16 5 C 0.08 1.91 10.46 -38.81 -0.41 1.50 16 6 C -0.11 -2.47 10.03 -38.98 -0.39 -2.86 16 7 C -0.13 -2.45 10.01 -39.72 -0.40 -2.84 16 8 C -0.11 -1.94 8.69 -38.81 -0.34 -2.28 16 9 C -0.01 -0.27 5.57 -106.86 -0.60 -0.86 16 10 C -0.14 -2.23 9.05 -37.73 -0.34 -2.57 16 11 H 0.13 1.76 7.91 -52.49 -0.42 1.35 16 12 C -0.02 -0.23 5.14 -17.34 -0.09 -0.32 16 13 N -0.65 -9.52 10.96 55.55 0.61 -8.92 16 14 Si 0.95 9.86 29.59 -169.99 -5.03 4.83 16 15 H -0.25 -2.63 7.11 56.52 0.40 -2.22 16 16 H -0.26 -2.65 7.11 56.52 0.40 -2.24 16 17 H -0.24 -2.54 7.11 56.52 0.40 -2.14 16 18 C -0.12 -2.79 9.78 -38.51 -0.38 -3.17 16 19 O -0.56 -17.37 14.19 -59.50 -0.84 -18.22 16 20 C 0.12 3.06 1.57 -89.98 -0.14 2.92 16 21 C -0.13 -2.94 7.78 37.15 0.29 -2.65 16 22 C -0.15 -3.39 7.78 37.16 0.29 -3.10 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.77 7.00 -51.93 -0.36 0.41 16 25 H 0.05 1.21 6.61 -51.93 -0.34 0.87 16 26 H 0.05 1.18 6.62 -51.92 -0.34 0.84 16 27 H 0.03 0.70 7.01 -51.93 -0.36 0.33 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.13 2.88 8.06 -52.48 -0.42 2.45 16 30 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 31 H 0.13 2.20 6.15 -52.49 -0.32 1.87 16 32 H 0.32 3.85 8.30 -40.82 -0.34 3.51 16 33 H 0.13 3.00 8.06 -52.49 -0.42 2.57 16 34 H 0.04 0.79 6.90 -51.93 -0.36 0.43 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 1.21 6.72 -51.92 -0.35 0.86 16 37 H 0.05 1.18 6.73 -51.93 -0.35 0.83 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.71 6.91 -51.93 -0.36 0.35 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -32.86 326.84 -8.91 -41.77 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -5.66 Total: 13.02 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.06 Total: -19.07 kcal Atomic # 7 Polarization: -9.52 SS G_CDS: 0.61 Total: -8.92 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.69 Total: -36.55 kcal Atomic # 14 Polarization: 9.86 SS G_CDS: -5.03 Total: 4.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.86 -8.91 -41.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169743573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.266 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds