Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.34663 * 2 1 4 4 O 1.44316 * 110.39209 * 122.29959 * 2 1 3 5 Xx 1.43465 * 104.66294 * 142.48524 * 4 2 1 6 5 C 1.56996 * 127.55920 * 140.14939 * 5 4 2 7 6 C 1.39735 * 120.00152 * 359.72869 * 6 5 4 8 7 C 1.38342 * 120.38179 * 179.71615 * 7 6 5 9 8 C 1.37759 * 120.39087 * 0.56033 * 8 7 6 10 9 C 1.40751 * 119.99372 * 359.71407 * 9 8 7 11 10 C 1.41437 * 120.18950 * 179.97438 * 10 9 8 12 11 H 1.08000 * 119.99591 * 204.51259 * 11 10 9 13 12 C 1.39934 * 119.99952 * 24.51029 * 11 10 9 14 13 N 1.30832 * 119.99968 * 17.88264 * 13 11 10 15 14 Si 1.86797 * 120.00161 * 197.87439 * 13 11 10 16 15 H 1.48499 * 109.46956 * 90.00156 * 15 13 11 17 16 H 1.48498 * 109.47437 * 210.00193 * 15 13 11 18 17 H 1.48509 * 109.47154 * 330.00440 * 15 13 11 19 18 C 1.38807 * 120.00784 * 179.97438 * 6 5 4 20 19 O 1.43472 * 104.89027 * 320.41089 * 5 4 2 21 20 C 1.44322 * 104.66167 * 39.58598 * 20 5 4 22 21 C 1.52992 * 110.39541 * 217.51744 * 21 20 5 23 22 C 1.53004 * 110.48512 * 95.17902 * 21 20 5 24 23 H 1.08998 * 109.47015 * 299.15288 * 1 2 3 25 24 H 1.08996 * 109.47071 * 59.15472 * 1 2 3 26 25 H 1.09004 * 109.46771 * 179.15267 * 1 2 3 27 26 H 1.09007 * 109.47219 * 180.84271 * 3 2 1 28 27 H 1.09002 * 109.47242 * 300.84393 * 3 2 1 29 28 H 1.09001 * 109.47476 * 60.84818 * 3 2 1 30 29 H 1.08006 * 119.80411 * 359.97149 * 7 6 5 31 30 H 1.08006 * 119.80109 * 180.27276 * 8 7 6 32 31 H 1.07998 * 120.00234 * 179.70031 * 9 8 7 33 32 H 0.97001 * 119.99938 * 179.97438 * 14 13 11 34 33 H 1.08001 * 120.18952 * 0.02945 * 19 6 5 35 34 H 1.09005 * 109.47439 * 175.27824 * 22 21 20 36 35 H 1.09001 * 109.47715 * 295.28435 * 22 21 20 37 36 H 1.09007 * 109.46822 * 55.27784 * 22 21 20 38 37 H 1.09002 * 109.47264 * 304.66747 * 23 21 20 39 38 H 1.09002 * 109.47141 * 64.66505 * 23 21 20 40 39 H 1.09000 * 109.46988 * 184.66565 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0620 1.4345 0.0000 4 8 2.0329 -0.7228 1.1434 5 6 4.5616 -1.6244 1.3922 6 6 4.7529 -1.1021 2.6740 7 6 5.9551 -1.2877 3.3329 8 6 6.9815 -1.9797 2.7285 9 6 6.8083 -2.5078 1.4354 10 6 7.8596 -3.2184 0.8107 11 1 7.9046 -3.2794 -0.2667 12 6 8.8413 -3.8425 1.5885 13 7 8.6202 -4.0766 2.8565 14 14 10.4674 -4.3413 0.8163 15 1 11.4363 -3.2224 0.9364 16 1 11.0021 -5.5365 1.5169 17 1 10.2565 -4.6616 -0.6184 18 6 5.5849 -2.3247 0.7684 19 8 2.8256 -1.8660 -0.6564 20 6 2.0674 -0.7751 -1.2203 21 6 0.9090 -1.3108 -2.0639 22 6 2.9710 0.1237 -2.0670 23 1 -0.3633 0.5006 0.8975 24 1 -0.3633 0.5269 -0.8823 25 1 -0.3633 -1.0276 -0.0152 26 1 3.1518 1.4179 -0.0151 27 1 1.6943 1.9584 -0.8823 28 1 1.7190 1.9493 0.8975 29 1 3.9561 -0.5539 3.1547 30 1 6.0912 -0.8837 4.3253 31 1 7.9191 -2.1167 3.2467 32 1 9.3005 -4.5095 3.3956 33 1 5.4421 -2.7260 -0.2241 34 1 0.2982 -0.4782 -2.4130 35 1 1.3051 -1.8553 -2.9211 36 1 0.2983 -1.9808 -1.4587 37 1 3.8127 0.4642 -1.4639 38 1 3.3420 -0.4383 -2.9241 39 1 2.4020 0.9853 -2.4162 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169743573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = 90.763977 kcal Electronic energy + Delta-G solvation = -19611.622229 eV Core-core repulsion = 16605.247500 eV Total energy + Delta-G solvation = -3006.374730 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 263.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.16685 -38.34191 -36.80024 -32.96141 -32.88405 -31.24677 -30.60278 -29.64800 -28.82512 -28.36465 -26.22107 -23.33218 -23.08831 -22.41479 -19.80322 -18.09316 -18.01767 -17.11681 -16.13611 -16.03635 -15.74715 -15.67987 -14.88977 -14.72365 -14.39525 -13.97326 -13.78171 -13.71289 -13.62402 -13.37258 -12.96090 -12.92551 -12.75526 -12.71978 -12.68614 -12.35609 -12.10730 -12.01443 -11.63352 -11.57719 -11.37069 -11.15578 -10.26700 -9.98941 -9.80316 -8.75014 -8.61201 -8.07790 -7.59370 -4.75631 -1.73495 0.17230 0.44939 1.17607 1.35363 1.58826 1.98240 2.00090 2.80549 3.86406 3.90979 4.04161 4.12376 4.22139 4.28601 4.41242 4.43066 4.45453 4.60103 4.67191 4.73940 4.74629 4.87742 4.89032 4.90596 4.96920 4.97815 4.99466 5.00277 5.12545 5.15258 5.26430 5.32102 5.42305 5.47685 5.62390 5.73375 5.78571 6.07384 6.23827 7.01642 7.21035 7.83089 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.004481 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.100541 B = 6247.423481 C = 6798.240511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.097 3.903 3 C -0.135 4.135 4 O -0.718 6.718 5 C 0.123 3.877 6 C -0.129 4.129 7 C -0.099 4.099 8 C -0.083 4.083 9 C -0.024 4.024 10 C -0.089 4.089 11 H 0.162 0.838 12 C -0.039 4.039 13 N -0.636 5.636 14 Si 1.023 2.977 15 H -0.245 1.245 16 H -0.251 1.251 17 H -0.243 1.243 18 C -0.131 4.131 19 O -0.716 6.716 20 C 0.098 3.902 21 C -0.124 4.124 22 C -0.134 4.134 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.057 0.943 28 H 0.029 0.971 29 H 0.126 0.874 30 H 0.176 0.824 31 H 0.170 0.830 32 H 0.346 0.654 33 H 0.131 0.869 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.031 0.969 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.274 -2.133 2.570 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.047 3.953 3 C -0.192 4.192 4 O -0.659 6.659 5 C 0.107 3.893 6 C -0.147 4.147 7 C -0.117 4.117 8 C -0.100 4.100 9 C -0.027 4.027 10 C -0.107 4.107 11 H 0.179 0.821 12 C -0.261 4.261 13 N -0.270 5.270 14 Si 0.837 3.163 15 H -0.168 1.168 16 H -0.174 1.174 17 H -0.165 1.165 18 C -0.149 4.149 19 O -0.656 6.656 20 C 0.048 3.952 21 C -0.182 4.182 22 C -0.192 4.192 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.144 0.856 30 H 0.193 0.807 31 H 0.187 0.813 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.396 -2.515 3.011 18.810 hybrid contribution -0.894 0.097 -0.436 0.999 sum 17.502 -2.417 2.576 17.855 Atomic orbital electron populations 1.22093 0.97514 0.99150 0.99442 1.21608 0.90223 0.89572 0.93933 1.22210 0.99201 0.98788 0.99027 1.94884 1.66193 1.70580 1.34200 1.31810 0.74820 0.94312 0.88404 1.21780 0.98415 1.01097 0.93426 1.21453 0.89671 0.99552 1.00980 1.22212 1.00729 0.94382 0.92676 1.18352 0.90652 0.98899 0.94756 1.22917 0.90372 0.96682 1.00737 0.82075 1.27878 1.06169 0.96525 0.95533 1.69698 1.38416 1.12057 1.06815 0.84460 0.71540 0.80032 0.80291 1.16821 1.17393 1.16543 1.22002 0.90757 0.99711 1.02439 1.94882 1.71190 1.39201 1.60356 1.21588 0.91500 0.92437 0.89677 1.22093 0.98497 0.99661 0.97928 1.22203 0.99491 0.99182 0.98289 0.94901 0.91747 0.95453 0.95569 0.92393 0.95188 0.85622 0.80710 0.81279 0.83824 0.85107 0.91775 0.94665 0.95625 0.95710 0.94967 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.53 7.78 71.98 0.56 -5.97 16 2 C 0.10 5.82 1.57 -10.38 -0.02 5.81 16 3 C -0.13 -6.97 7.79 71.98 0.56 -6.41 16 4 O -0.72 -51.19 14.19 -125.77 -1.78 -52.97 16 5 C 0.12 6.37 10.46 22.77 0.24 6.61 16 6 C -0.13 -5.51 10.03 22.66 0.23 -5.29 16 7 C -0.10 -3.03 10.01 22.18 0.22 -2.81 16 8 C -0.08 -2.35 8.69 22.77 0.20 -2.15 16 9 C -0.02 -0.76 5.57 -21.32 -0.12 -0.88 16 10 C -0.09 -2.09 9.05 23.47 0.21 -1.88 16 11 H 0.16 3.03 7.91 -2.91 -0.02 3.01 16 12 C -0.04 -0.72 5.14 85.25 0.44 -0.28 16 13 N -0.64 -12.69 10.96 21.82 0.24 -12.45 16 14 Si 1.02 11.89 29.59 68.60 2.03 13.92 16 15 H -0.24 -2.88 7.11 99.48 0.71 -2.18 16 16 H -0.25 -2.88 7.11 99.48 0.71 -2.17 16 17 H -0.24 -3.04 7.11 99.48 0.71 -2.33 16 18 C -0.13 -5.63 9.78 22.97 0.22 -5.40 16 19 O -0.72 -50.78 14.19 -125.77 -1.78 -52.57 16 20 C 0.10 5.88 1.57 -10.38 -0.02 5.87 16 21 C -0.12 -6.50 7.78 71.98 0.56 -5.94 16 22 C -0.13 -6.90 7.78 71.98 0.56 -6.33 16 23 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 2.84 7.00 -2.39 -0.02 2.83 16 25 H 0.03 1.47 6.61 -2.39 -0.02 1.46 16 26 H 0.03 1.38 6.62 -2.38 -0.02 1.36 16 27 H 0.06 2.56 7.01 -2.39 -0.02 2.54 16 28 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.13 5.72 8.06 -2.91 -0.02 5.69 16 30 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.17 3.82 6.15 -2.91 -0.02 3.80 16 32 H 0.35 4.94 8.30 -92.71 -0.77 4.17 16 33 H 0.13 5.91 8.06 -2.91 -0.02 5.88 16 34 H 0.06 2.83 6.90 -2.38 -0.02 2.82 16 35 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.02 1.38 6.72 -2.38 -0.02 1.36 16 37 H 0.02 1.30 6.73 -2.39 -0.02 1.28 16 38 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 2.54 6.91 -2.39 -0.02 2.52 16 Total: -1.00 -90.57 326.84 3.58 -86.98 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: 1.03 Total: 42.14 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 3.85 Total: -25.05 kcal Atomic # 7 Polarization: -12.69 SS G_CDS: 0.24 Total: -12.45 kcal Atomic # 8 Polarization: -101.97 SS G_CDS: -3.57 Total: -105.54 kcal Atomic # 14 Polarization: 11.89 SS G_CDS: 2.03 Total: 13.92 kcal Total: -90.57 3.58 -86.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169743573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.747 kcal (2) G-P(sol) polarization free energy of solvation -90.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds