Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.68680 * 2 1 4 4 C 1.54609 * 110.77785 * 123.49683 * 2 1 3 5 5 C 1.51573 * 102.81385 * 143.89365 * 4 2 1 6 6 C 1.37919 * 131.57139 * 163.77378 * 5 4 2 7 7 C 1.38299 * 120.08500 * 180.32490 * 6 5 4 8 8 C 1.38305 * 119.87981 * 359.97438 * 7 6 5 9 9 C 1.37909 * 120.26676 * 359.87871 * 8 7 6 10 10 C 1.38964 * 107.94578 * 343.80823 * 5 4 2 11 11 N 1.40038 * 110.97242 * 359.55180 * 10 5 4 12 12 C 1.46894 * 110.99893 * 256.28567 * 11 10 5 13 13 C 1.50705 * 109.47479 * 283.59300 * 12 11 10 14 14 O 1.21279 * 119.99436 * 353.81484 * 13 12 11 15 15 N 1.34774 * 120.00303 * 173.81469 * 13 12 11 16 16 C 1.46493 * 119.99942 * 180.27736 * 15 13 12 17 17 C 1.50701 * 109.47418 * 179.72081 * 16 15 13 18 18 H 1.08002 * 119.99474 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00363 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00307 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00229 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46851 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46996 * 120.00362 * 21 19 17 24 24 H 1.48500 * 109.47520 * 240.00451 * 21 19 17 25 25 H 1.09006 * 109.46899 * 183.29149 * 1 2 3 26 26 H 1.09001 * 109.47099 * 303.29312 * 1 2 3 27 27 H 1.09001 * 109.47316 * 63.29700 * 1 2 3 28 28 H 1.09001 * 110.74288 * 262.22517 * 4 2 1 29 29 H 1.09006 * 110.73884 * 25.56367 * 4 2 1 30 30 H 1.08003 * 119.95304 * 0.28512 * 6 5 4 31 31 H 1.07995 * 120.06132 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.86664 * 179.89807 * 8 7 6 33 33 H 1.08000 * 119.90471 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47282 * 163.59462 * 12 11 10 35 35 H 1.09002 * 109.47607 * 43.59492 * 12 11 10 36 36 H 0.96996 * 120.00088 * 359.97438 * 15 13 12 37 37 H 1.09002 * 109.47103 * 299.72374 * 16 15 13 38 38 H 1.09003 * 109.47362 * 59.72126 * 16 15 13 39 39 H 0.96992 * 120.00489 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0785 -0.7978 1.2055 5 6 3.3142 -1.4638 0.6336 6 6 4.3959 -2.0636 1.2439 7 6 5.4144 -2.6004 0.4777 8 6 5.3464 -2.5351 -0.9022 9 6 4.2656 -1.9391 -1.5174 10 6 3.2337 -1.3978 -0.7521 11 7 2.0547 -0.7590 -1.1558 12 6 1.0668 -1.7333 -1.6382 13 6 1.4482 -2.1926 -3.0219 14 8 2.3790 -1.6712 -3.5987 15 7 0.7551 -3.1827 -3.6183 16 6 1.1297 -3.6332 -4.9610 17 6 0.2090 -4.7453 -5.3929 18 1 -0.5770 -5.0824 -4.7333 19 6 0.3693 -5.3316 -6.6304 20 7 1.3260 -4.9208 -7.4338 21 14 -0.7725 -6.7096 -7.1660 22 1 -1.7575 -6.9831 -6.0889 23 1 -1.4903 -6.3056 -8.4017 24 1 0.0221 -7.9353 -7.4335 25 1 -0.3633 -1.0260 0.0590 26 1 -0.3633 0.5641 0.8590 27 1 -0.3634 0.4618 -0.9181 28 1 2.3444 -0.1277 2.0231 29 1 1.3556 -1.5438 1.5357 30 1 4.4478 -2.1136 2.3215 31 1 6.2614 -3.0696 0.9559 32 1 6.1427 -2.9529 -1.5003 33 1 4.2182 -1.8917 -2.5953 34 1 0.0819 -1.2673 -1.6687 35 1 1.0426 -2.5901 -0.9648 36 1 0.0109 -3.5999 -3.1568 37 1 1.0469 -2.8008 -5.6598 38 1 2.1574 -3.9965 -4.9488 39 1 1.4390 -5.3335 -8.3042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009220405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = 8.669088 kcal Electronic energy + Delta-G solvation = -20950.115804 eV Core-core repulsion = 17857.903523 eV Total energy + Delta-G solvation = -3092.212281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05725 -38.45303 -36.97671 -34.15208 -32.36422 -32.26418 -31.22863 -29.87752 -27.76202 -26.51047 -25.86998 -22.60898 -21.88866 -21.20000 -20.44290 -19.46188 -17.48044 -16.57970 -16.15145 -15.85752 -15.26917 -15.13162 -14.89031 -14.55940 -14.09064 -13.91324 -13.46505 -13.19082 -13.01660 -12.71006 -12.42660 -12.19693 -12.07007 -11.88419 -11.75359 -11.50467 -11.20596 -11.13710 -10.94674 -10.89764 -10.66457 -10.30414 -9.39421 -9.36756 -8.85143 -8.72407 -8.65880 -7.83693 -7.78194 -6.16143 -4.22887 1.40837 1.55295 3.23509 3.30424 3.33343 3.39577 3.49087 3.86404 4.20385 4.39327 4.49560 4.68397 4.72425 5.08876 5.10040 5.16278 5.20135 5.28073 5.37697 5.40288 5.46753 5.50983 5.59116 5.61412 5.77715 5.83313 5.93905 6.00915 6.19781 6.48956 6.59182 6.69301 6.88068 7.00121 7.33231 7.41973 7.48921 7.53800 7.69138 7.98125 8.65555 8.80692 9.15428 9.44109 10.94128 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.022881 B = 0.004303 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.449193 B = 6505.563380 C = 7185.670036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.077 3.923 3 H 0.099 0.901 4 C -0.105 4.105 5 C -0.148 4.148 6 C -0.099 4.099 7 C -0.135 4.135 8 C -0.110 4.110 9 C -0.096 4.096 10 C 0.097 3.903 11 N -0.470 5.470 12 C 0.028 3.972 13 C 0.498 3.502 14 O -0.535 6.535 15 N -0.715 5.715 16 C 0.252 3.748 17 C -0.542 4.542 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.389 0.611 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 6.863 18.914 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.030 4.030 3 H 0.117 0.883 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.117 4.117 7 C -0.154 4.154 8 C -0.128 4.128 9 C -0.116 4.116 10 C 0.001 3.999 11 N -0.187 5.187 12 C -0.101 4.101 13 C 0.281 3.719 14 O -0.412 6.412 15 N -0.364 5.364 16 C 0.131 3.869 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.163 0.837 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.221 0.779 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.658 7.561 17.820 19.429 hybrid contribution -1.032 -1.492 0.423 1.862 sum 0.627 6.069 18.244 19.237 Atomic orbital electron populations 1.22134 0.93740 1.02686 1.03052 1.22738 0.95213 0.98279 0.86767 0.88298 1.21763 0.94663 0.99029 0.98823 1.20978 0.97171 1.02064 0.94811 1.20277 0.93304 0.98896 0.99246 1.21023 0.98948 1.01378 0.94001 1.21034 0.98021 0.99154 0.94606 1.21141 0.91520 0.97023 1.01890 1.19467 0.92678 0.95966 0.91759 1.59796 1.02323 1.23892 1.32703 1.22344 0.96974 0.95158 0.95610 1.20260 0.83645 0.80683 0.87267 1.90590 1.29040 1.56060 1.65547 1.46434 1.33751 1.35879 1.20367 1.19076 0.96313 0.94620 0.76878 1.21266 1.16085 1.18776 1.01929 0.91906 1.24946 0.95589 0.97247 0.96209 1.69982 1.31197 1.41700 1.09405 0.86376 0.80458 0.81516 0.78644 1.19656 1.20791 1.20804 0.91744 0.91292 0.90975 0.89877 0.90154 0.86630 0.86117 0.85736 0.83686 0.86900 0.92020 0.77928 0.95552 0.95641 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 7.82 37.16 0.29 -1.08 16 2 C 0.08 0.86 3.99 -66.31 -0.26 0.60 16 3 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 4 C -0.10 -1.08 6.51 -26.61 -0.17 -1.26 16 5 C -0.15 -1.98 6.23 -104.04 -0.65 -2.63 16 6 C -0.10 -1.20 10.03 -39.68 -0.40 -1.60 16 7 C -0.13 -1.67 10.06 -39.53 -0.40 -2.07 16 8 C -0.11 -1.57 10.02 -39.68 -0.40 -1.97 16 9 C -0.10 -1.66 9.27 -39.27 -0.36 -2.02 16 10 C 0.10 1.57 5.23 -83.40 -0.44 1.13 16 11 N -0.47 -7.22 4.61 -162.92 -0.75 -7.97 16 12 C 0.03 0.42 4.40 -4.98 -0.02 0.40 16 13 C 0.50 10.08 7.45 -10.98 -0.08 10.00 16 14 O -0.53 -12.84 13.63 5.56 0.08 -12.76 16 15 N -0.71 -15.12 5.55 -61.47 -0.34 -15.46 16 16 C 0.25 6.69 5.43 -5.20 -0.03 6.67 16 17 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 21 Si 0.90 20.87 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.06 0.53 6.63 -51.93 -0.34 0.19 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.66 7.66 -51.93 -0.40 0.26 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 30 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.15 2.91 5.89 -52.49 -0.31 2.60 16 34 H 0.11 1.41 5.33 -51.93 -0.28 1.13 16 35 H 0.06 0.86 7.97 -51.93 -0.41 0.45 16 36 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -32.71 319.57 -9.23 -41.94 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.41 Total: 6.23 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -3.34 Total: -7.22 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.36 Total: -48.85 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.71 -9.23 -41.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009220405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.606 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds