Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.68680 * 2 1 4 4 C 1.54609 * 110.77785 * 123.49683 * 2 1 3 5 5 C 1.51573 * 102.81385 * 143.89365 * 4 2 1 6 6 C 1.37919 * 131.57139 * 163.77378 * 5 4 2 7 7 C 1.38299 * 120.08500 * 180.32490 * 6 5 4 8 8 C 1.38305 * 119.87981 * 359.97438 * 7 6 5 9 9 C 1.37909 * 120.26676 * 359.87871 * 8 7 6 10 10 C 1.38964 * 107.94578 * 343.80823 * 5 4 2 11 11 N 1.40038 * 110.97242 * 359.55180 * 10 5 4 12 12 C 1.46894 * 110.99893 * 256.28567 * 11 10 5 13 13 C 1.50705 * 109.47479 * 283.59300 * 12 11 10 14 14 O 1.21279 * 119.99436 * 353.81484 * 13 12 11 15 15 N 1.34774 * 120.00303 * 173.81469 * 13 12 11 16 16 C 1.46493 * 119.99942 * 180.27736 * 15 13 12 17 17 C 1.50701 * 109.47418 * 179.72081 * 16 15 13 18 18 H 1.08002 * 119.99474 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00363 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00307 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00229 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46851 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46996 * 120.00362 * 21 19 17 24 24 H 1.48500 * 109.47520 * 240.00451 * 21 19 17 25 25 H 1.09006 * 109.46899 * 183.29149 * 1 2 3 26 26 H 1.09001 * 109.47099 * 303.29312 * 1 2 3 27 27 H 1.09001 * 109.47316 * 63.29700 * 1 2 3 28 28 H 1.09001 * 110.74288 * 262.22517 * 4 2 1 29 29 H 1.09006 * 110.73884 * 25.56367 * 4 2 1 30 30 H 1.08003 * 119.95304 * 0.28512 * 6 5 4 31 31 H 1.07995 * 120.06132 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.86664 * 179.89807 * 8 7 6 33 33 H 1.08000 * 119.90471 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47282 * 163.59462 * 12 11 10 35 35 H 1.09002 * 109.47607 * 43.59492 * 12 11 10 36 36 H 0.96996 * 120.00088 * 359.97438 * 15 13 12 37 37 H 1.09002 * 109.47103 * 299.72374 * 16 15 13 38 38 H 1.09003 * 109.47362 * 59.72126 * 16 15 13 39 39 H 0.96992 * 120.00489 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0785 -0.7978 1.2055 5 6 3.3142 -1.4638 0.6336 6 6 4.3959 -2.0636 1.2439 7 6 5.4144 -2.6004 0.4777 8 6 5.3464 -2.5351 -0.9022 9 6 4.2656 -1.9391 -1.5174 10 6 3.2337 -1.3978 -0.7521 11 7 2.0547 -0.7590 -1.1558 12 6 1.0668 -1.7333 -1.6382 13 6 1.4482 -2.1926 -3.0219 14 8 2.3790 -1.6712 -3.5987 15 7 0.7551 -3.1827 -3.6183 16 6 1.1297 -3.6332 -4.9610 17 6 0.2090 -4.7453 -5.3929 18 1 -0.5770 -5.0824 -4.7333 19 6 0.3693 -5.3316 -6.6304 20 7 1.3260 -4.9208 -7.4338 21 14 -0.7725 -6.7096 -7.1660 22 1 -1.7575 -6.9831 -6.0889 23 1 -1.4903 -6.3056 -8.4017 24 1 0.0221 -7.9353 -7.4335 25 1 -0.3633 -1.0260 0.0590 26 1 -0.3633 0.5641 0.8590 27 1 -0.3634 0.4618 -0.9181 28 1 2.3444 -0.1277 2.0231 29 1 1.3556 -1.5438 1.5357 30 1 4.4478 -2.1136 2.3215 31 1 6.2614 -3.0696 0.9559 32 1 6.1427 -2.9529 -1.5003 33 1 4.2182 -1.8917 -2.5953 34 1 0.0819 -1.2673 -1.6687 35 1 1.0426 -2.5901 -0.9648 36 1 0.0109 -3.5999 -3.1568 37 1 1.0469 -2.8008 -5.6598 38 1 2.1574 -3.9965 -4.9488 39 1 1.4390 -5.3335 -8.3042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009220405.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = -14.147964 kcal Electronic energy + Delta-G solvation = -20951.105225 eV Core-core repulsion = 17857.903523 eV Total energy + Delta-G solvation = -3093.201703 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12969 -40.09014 -38.03354 -36.12257 -34.35310 -33.36990 -32.13490 -31.07087 -29.51431 -27.62693 -27.09429 -24.58167 -22.90859 -22.26506 -21.77030 -20.84766 -19.11409 -17.89485 -17.72255 -17.02999 -16.82350 -16.52978 -16.32826 -15.90597 -15.52707 -15.16212 -14.65165 -14.48563 -14.23459 -14.04242 -13.87334 -13.73731 -13.29654 -13.05012 -12.89819 -12.83505 -12.71702 -12.57814 -12.23093 -12.12213 -11.97601 -11.71006 -11.46435 -10.82142 -10.74374 -10.26140 -9.80074 -9.72008 -8.84895 -8.30118 -6.47064 0.35616 0.46315 1.42200 1.43638 1.57112 1.77844 2.21573 2.41027 2.76428 2.93210 3.04811 3.61229 3.79472 3.85565 4.01723 4.15163 4.19459 4.25275 4.26000 4.36875 4.55689 4.56774 4.70287 4.78075 4.86783 4.96215 5.09805 5.12286 5.20936 5.22968 5.28495 5.47085 5.47986 5.55735 5.61095 5.69674 5.84221 5.85284 5.98333 6.33289 6.64387 6.93964 7.22872 7.52919 8.82481 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.022881 B = 0.004303 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.449193 B = 6505.563380 C = 7185.670036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.074 3.926 3 H 0.097 0.903 4 C -0.095 4.095 5 C -0.147 4.147 6 C -0.095 4.095 7 C -0.129 4.129 8 C -0.123 4.123 9 C -0.135 4.135 10 C 0.071 3.929 11 N -0.499 5.499 12 C 0.046 3.954 13 C 0.490 3.510 14 O -0.579 6.579 15 N -0.710 5.710 16 C 0.270 3.730 17 C -0.555 4.555 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.986 3.014 22 H -0.252 1.252 23 H -0.278 1.278 24 H -0.279 1.279 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.407 0.593 37 H -0.015 1.015 38 H -0.018 1.018 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.193 6.148 22.590 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.032 4.032 3 H 0.115 0.885 4 C -0.133 4.133 5 C -0.150 4.150 6 C -0.113 4.113 7 C -0.148 4.148 8 C -0.141 4.141 9 C -0.155 4.155 10 C -0.025 4.025 11 N -0.217 5.217 12 C -0.083 4.083 13 C 0.276 3.724 14 O -0.459 6.459 15 N -0.361 5.361 16 C 0.148 3.852 17 C -0.592 4.592 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.809 3.191 22 H -0.175 1.175 23 H -0.204 1.204 24 H -0.205 1.205 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.148 0.852 33 H 0.116 0.884 34 H 0.162 0.838 35 H 0.099 0.901 36 H 0.242 0.758 37 H 0.003 0.997 38 H 0.000 1.000 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.432 6.862 21.553 22.623 hybrid contribution -0.271 -1.183 -0.700 1.401 sum -0.703 5.679 20.853 21.624 Atomic orbital electron populations 1.22136 0.91557 1.03648 1.03950 1.22912 0.96969 0.97691 0.85610 0.88460 1.21814 0.93295 0.99418 0.98723 1.21407 0.98560 1.01465 0.93564 1.20750 0.92243 0.97230 1.01081 1.21396 1.00053 1.00523 0.92790 1.21188 0.97479 0.99277 0.96184 1.21011 0.94170 1.00378 0.99972 1.19636 0.92791 0.96861 0.93220 1.59711 1.02446 1.24234 1.35339 1.22249 0.98163 0.96219 0.91622 1.21366 0.82359 0.79439 0.89186 1.90587 1.30820 1.57289 1.67177 1.46160 1.34676 1.36594 1.18652 1.18479 0.94409 0.93318 0.79040 1.21650 1.16377 1.18633 1.02585 0.89753 1.26085 0.97224 1.00141 0.96176 1.70151 1.33409 1.43504 1.10033 0.85097 0.78156 0.77343 0.78528 1.17506 1.20386 1.20486 0.90916 0.88507 0.91789 0.87250 0.88344 0.82942 0.82878 0.85248 0.88361 0.83788 0.90149 0.75767 0.99667 0.99958 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 7.82 71.98 0.56 -1.57 16 2 C 0.07 1.48 3.99 45.27 0.18 1.66 16 3 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.09 -1.58 6.51 30.67 0.20 -1.38 16 5 C -0.15 -3.60 6.23 -19.49 -0.12 -3.72 16 6 C -0.09 -2.01 10.03 22.21 0.22 -1.78 16 7 C -0.13 -2.96 10.06 22.30 0.22 -2.74 16 8 C -0.12 -3.66 10.02 22.21 0.22 -3.44 16 9 C -0.14 -5.03 9.27 22.47 0.21 -4.82 16 10 C 0.07 2.30 5.23 38.29 0.20 2.50 16 11 N -0.50 -15.21 4.61 -669.37 -3.09 -18.30 16 12 C 0.05 1.35 4.40 85.56 0.38 1.72 16 13 C 0.49 20.77 7.45 87.66 0.65 21.42 16 14 O -0.58 -30.20 13.63 -3.03 -0.04 -30.25 16 15 N -0.71 -31.10 5.55 -466.79 -2.59 -33.69 16 16 C 0.27 15.30 5.43 85.63 0.46 15.76 16 17 C -0.55 -30.69 9.28 25.60 0.24 -30.45 16 18 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 19 C 0.00 0.18 5.46 84.65 0.46 0.64 16 20 N -0.93 -57.23 13.29 21.44 0.28 -56.95 16 21 Si 0.99 42.73 29.54 68.60 2.03 44.75 16 22 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H 0.07 0.89 6.63 -2.38 -0.02 0.87 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.34 7.87 -2.38 -0.02 1.32 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 33 H 0.10 4.50 5.89 -2.91 -0.02 4.48 16 34 H 0.14 3.29 5.33 -2.39 -0.01 3.28 16 35 H 0.08 2.08 7.97 -2.39 -0.02 2.06 16 36 H 0.41 14.58 8.32 -92.71 -0.77 13.80 16 37 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -77.79 319.57 0.97 -76.82 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.29 Total: 23.80 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 4.09 Total: -6.19 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -5.39 Total: -108.94 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.04 Total: -30.25 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -77.79 0.97 -76.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009220405.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.672 kcal (2) G-P(sol) polarization free energy of solvation -77.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds