Wall clock time and date at job start Mon Mar 30 2020 02:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 113.38520 * 2 1 4 4 C 1.53513 * 114.17255 * 226.91691 * 2 1 3 5 5 N 1.47476 * 87.93476 * 272.38023 * 4 2 1 6 6 C 1.46901 * 111.00088 * 221.29490 * 5 4 2 7 7 C 1.50697 * 109.46920 * 285.97081 * 6 5 4 8 8 O 1.21297 * 120.00244 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00107 * 180.02562 * 7 6 5 10 10 C 1.37103 * 120.00537 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99345 * 359.97438 * 10 9 7 12 12 C 1.38943 * 120.00184 * 180.02562 * 10 9 7 13 13 N 1.31415 * 120.00214 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99939 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47204 * 89.99496 * 14 12 10 16 16 H 1.48497 * 109.47187 * 209.99578 * 14 12 10 17 17 H 1.48500 * 109.46933 * 329.99319 * 14 12 10 18 18 C 1.47481 * 87.83482 * 332.98793 * 5 4 2 19 19 H 1.08996 * 113.47726 * 272.18350 * 18 5 4 20 20 C 1.50706 * 113.47714 * 141.78049 * 18 5 4 21 21 C 1.38234 * 120.00196 * 159.50562 * 20 18 5 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 18 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38243 * 120.00076 * 0.02562 * 23 22 21 25 25 C 1.38235 * 119.99598 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46716 * 286.92007 * 1 2 3 27 27 H 1.08993 * 109.47016 * 46.91878 * 1 2 3 28 28 H 1.09000 * 109.47437 * 166.92206 * 1 2 3 29 29 H 1.08997 * 113.47756 * 157.60570 * 4 2 1 30 30 H 1.09003 * 113.52558 * 27.15562 * 4 2 1 31 31 H 1.08999 * 109.46840 * 45.97031 * 6 5 4 32 32 H 1.08999 * 109.47234 * 165.96965 * 6 5 4 33 33 H 0.97006 * 119.99534 * 359.97438 * 9 7 6 34 34 H 0.96997 * 119.99891 * 180.02562 * 13 12 10 35 35 H 1.08000 * 119.99516 * 0.24808 * 21 20 18 36 36 H 1.08000 * 119.99318 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.00391 * 180.02562 * 23 22 21 38 38 H 1.07999 * 120.00221 * 179.97438 * 24 23 22 39 39 H 1.08005 * 119.99789 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9626 1.0004 0.0000 4 6 2.1586 -0.9566 -1.0229 5 7 2.0810 -2.0161 0.0000 6 6 3.2985 -2.8381 0.0001 7 6 3.2934 -3.7434 -1.2046 8 8 2.3665 -3.7078 -1.9861 9 7 4.3183 -4.5934 -1.4132 10 6 4.3140 -5.4167 -2.5095 11 1 3.4890 -5.3844 -3.2057 12 6 5.3703 -6.2934 -2.7241 13 7 6.3739 -6.3331 -1.8766 14 14 5.3647 -7.4146 -4.2182 15 1 6.0291 -6.7278 -5.3550 16 1 6.0969 -8.6667 -3.9002 17 1 3.9637 -7.7405 -4.5872 18 6 2.1586 -0.9566 1.0230 19 1 3.1797 -0.6912 1.2968 20 6 1.2822 -1.2141 2.2217 21 6 1.5430 -0.5741 3.4189 22 6 0.7388 -0.8099 4.5182 23 6 -0.3265 -1.6852 4.4203 24 6 -0.5874 -2.3253 3.2230 25 6 0.2168 -2.0895 2.1237 26 1 -0.3633 0.2991 0.9832 27 1 -0.3633 0.7019 -0.7505 28 1 -0.3634 -1.0010 -0.2325 29 1 3.1797 -0.6905 -1.2959 30 1 1.5255 -1.1434 -1.8903 31 1 4.1743 -2.1901 -0.0360 32 1 3.3298 -3.4410 0.9076 33 1 5.0594 -4.6221 -0.7880 34 1 7.1115 -6.9448 -2.0267 35 1 2.3725 0.1135 3.4940 36 1 0.9429 -0.3101 5.4536 37 1 -0.9551 -1.8692 5.2790 38 1 -1.4195 -3.0095 3.1466 39 1 0.0133 -2.5898 1.1884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081574888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:59 Heat of formation + Delta-G solvation = 25.849566 kcal Electronic energy + Delta-G solvation = -20803.018088 eV Core-core repulsion = 17711.550808 eV Total energy + Delta-G solvation = -3091.467280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80631 -38.55573 -37.63369 -33.91932 -32.04176 -31.23293 -31.02588 -30.73160 -27.72251 -25.50785 -25.03710 -23.33593 -22.17076 -21.51050 -19.24809 -18.66237 -17.88595 -16.81760 -16.05412 -15.90360 -15.36034 -14.82560 -14.64035 -14.38583 -13.87315 -13.76677 -13.69454 -13.30777 -12.87966 -12.56920 -12.31400 -12.22440 -12.11794 -11.72385 -11.53516 -11.20299 -11.08679 -10.93218 -10.85383 -10.47196 -10.38170 -10.20221 -10.19086 -9.48849 -8.81785 -8.69533 -8.58353 -8.20786 -7.94862 -6.40434 -3.81245 1.40924 1.51468 3.18432 3.26947 3.33057 3.79629 3.92304 4.08643 4.27227 4.48374 4.85577 4.96699 4.98795 5.05294 5.09499 5.21213 5.24838 5.34424 5.50016 5.52629 5.61026 5.69045 5.73919 5.82795 5.91926 5.98607 6.06235 6.11219 6.16475 6.25616 6.30479 6.46039 6.53114 6.59729 6.65260 6.83529 7.10846 7.30775 7.56234 8.07153 8.62958 9.19330 9.55789 10.07662 10.77457 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.027562 B = 0.003926 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.636489 B = 7129.640691 C = 7506.848562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 H 0.080 0.920 4 C 0.015 3.985 5 N -0.433 5.433 6 C 0.009 3.991 7 C 0.446 3.554 8 O -0.578 6.578 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.059 3.941 19 H 0.082 0.918 20 C -0.062 4.062 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.086 4.086 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.392 0.608 34 H 0.271 0.729 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 12.646 10.918 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.128 4.128 3 H 0.098 0.902 4 C -0.114 4.114 5 N -0.154 5.154 6 C -0.123 4.123 7 C 0.231 3.769 8 O -0.462 6.462 9 N -0.202 5.202 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.051 4.051 19 H 0.100 0.900 20 C -0.062 4.062 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.104 4.104 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.010 12.008 10.363 18.242 hybrid contribution 1.553 -0.254 -0.187 1.585 sum -7.456 11.754 10.177 17.243 Atomic orbital electron populations 1.21521 0.92900 1.02734 1.01163 1.22639 0.97168 0.97314 0.95686 0.90156 1.23707 1.00436 0.90341 0.96906 1.68736 1.33238 1.10701 1.02772 1.22480 0.92288 0.97728 0.99800 1.19650 0.84716 0.84548 0.87963 1.90520 1.36234 1.71266 1.48184 1.41871 1.19671 1.34165 1.24511 1.19695 1.06376 1.14707 1.02001 0.87956 1.25252 0.95304 0.98423 0.98959 1.69615 1.09528 1.38638 1.36634 0.85863 0.78547 0.79090 0.80830 1.20441 1.20923 1.19403 1.22491 0.97702 0.93328 0.91548 0.89987 1.19553 0.96174 0.96969 0.93510 1.20958 0.99867 1.00232 0.92617 1.21011 0.96013 0.99270 0.98278 1.21103 0.97982 0.97707 0.97703 1.21209 1.00000 1.00057 0.93244 1.21240 0.93597 0.96432 0.99142 0.92534 0.92833 0.91157 0.91716 0.88871 0.92773 0.89266 0.77532 0.91900 0.86530 0.86545 0.86643 0.86336 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.26 37.16 0.31 -1.19 16 2 C -0.11 -1.35 4.67 -90.09 -0.42 -1.77 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.01 0.23 6.24 -7.55 -0.05 0.18 16 5 N -0.43 -7.23 4.57 -239.34 -1.09 -8.32 16 6 C 0.01 0.17 5.31 -4.98 -0.03 0.14 16 7 C 0.45 10.70 7.62 -10.99 -0.08 10.62 16 8 O -0.58 -15.79 15.34 5.54 0.09 -15.70 16 9 N -0.57 -14.57 5.29 -10.97 -0.06 -14.63 16 10 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 14 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 18 C 0.06 0.79 3.24 -72.59 -0.23 0.55 16 19 H 0.08 1.01 7.77 -51.93 -0.40 0.61 16 20 C -0.06 -0.80 4.35 -104.62 -0.46 -1.26 16 21 C -0.12 -1.35 9.74 -39.58 -0.39 -1.73 16 22 C -0.13 -1.35 10.05 -39.59 -0.40 -1.75 16 23 C -0.13 -1.37 10.05 -39.58 -0.40 -1.76 16 24 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 25 C -0.09 -1.17 7.84 -39.58 -0.31 -1.48 16 26 H 0.06 0.65 7.26 -51.93 -0.38 0.27 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.95 6.95 -51.93 -0.36 0.59 16 29 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 30 H 0.09 1.61 8.11 -51.93 -0.42 1.19 16 31 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 33 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.14 2.08 6.73 -52.48 -0.35 1.72 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -31.08 323.81 -9.08 -40.16 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.50 Total: 10.91 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -3.09 Total: -9.41 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.43 Total: -47.06 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.09 Total: -15.70 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.08 -9.08 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081574888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.006 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds