Wall clock time and date at job start Mon Mar 30 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 113.38520 * 2 1 4 4 C 1.53513 * 114.17255 * 226.91691 * 2 1 3 5 5 N 1.47476 * 87.93476 * 272.38023 * 4 2 1 6 6 C 1.46901 * 111.00088 * 221.29490 * 5 4 2 7 7 C 1.50697 * 109.46920 * 285.97081 * 6 5 4 8 8 O 1.21297 * 120.00244 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00107 * 180.02562 * 7 6 5 10 10 C 1.37103 * 120.00537 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99345 * 359.97438 * 10 9 7 12 12 C 1.38943 * 120.00184 * 180.02562 * 10 9 7 13 13 N 1.31415 * 120.00214 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99939 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47204 * 89.99496 * 14 12 10 16 16 H 1.48497 * 109.47187 * 209.99578 * 14 12 10 17 17 H 1.48500 * 109.46933 * 329.99319 * 14 12 10 18 18 C 1.47481 * 87.83482 * 332.98793 * 5 4 2 19 19 H 1.08996 * 113.47726 * 272.18350 * 18 5 4 20 20 C 1.50706 * 113.47714 * 141.78049 * 18 5 4 21 21 C 1.38234 * 120.00196 * 159.50562 * 20 18 5 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 18 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38243 * 120.00076 * 0.02562 * 23 22 21 25 25 C 1.38235 * 119.99598 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.46716 * 286.92007 * 1 2 3 27 27 H 1.08993 * 109.47016 * 46.91878 * 1 2 3 28 28 H 1.09000 * 109.47437 * 166.92206 * 1 2 3 29 29 H 1.08997 * 113.47756 * 157.60570 * 4 2 1 30 30 H 1.09003 * 113.52558 * 27.15562 * 4 2 1 31 31 H 1.08999 * 109.46840 * 45.97031 * 6 5 4 32 32 H 1.08999 * 109.47234 * 165.96965 * 6 5 4 33 33 H 0.97006 * 119.99534 * 359.97438 * 9 7 6 34 34 H 0.96997 * 119.99891 * 180.02562 * 13 12 10 35 35 H 1.08000 * 119.99516 * 0.24808 * 21 20 18 36 36 H 1.08000 * 119.99318 * 179.97438 * 22 21 20 37 37 H 1.08002 * 120.00391 * 180.02562 * 23 22 21 38 38 H 1.07999 * 120.00221 * 179.97438 * 24 23 22 39 39 H 1.08005 * 119.99789 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9626 1.0004 0.0000 4 6 2.1586 -0.9566 -1.0229 5 7 2.0810 -2.0161 0.0000 6 6 3.2985 -2.8381 0.0001 7 6 3.2934 -3.7434 -1.2046 8 8 2.3665 -3.7078 -1.9861 9 7 4.3183 -4.5934 -1.4132 10 6 4.3140 -5.4167 -2.5095 11 1 3.4890 -5.3844 -3.2057 12 6 5.3703 -6.2934 -2.7241 13 7 6.3739 -6.3331 -1.8766 14 14 5.3647 -7.4146 -4.2182 15 1 6.0291 -6.7278 -5.3550 16 1 6.0969 -8.6667 -3.9002 17 1 3.9637 -7.7405 -4.5872 18 6 2.1586 -0.9566 1.0230 19 1 3.1797 -0.6912 1.2968 20 6 1.2822 -1.2141 2.2217 21 6 1.5430 -0.5741 3.4189 22 6 0.7388 -0.8099 4.5182 23 6 -0.3265 -1.6852 4.4203 24 6 -0.5874 -2.3253 3.2230 25 6 0.2168 -2.0895 2.1237 26 1 -0.3633 0.2991 0.9832 27 1 -0.3633 0.7019 -0.7505 28 1 -0.3634 -1.0010 -0.2325 29 1 3.1797 -0.6905 -1.2959 30 1 1.5255 -1.1434 -1.8903 31 1 4.1743 -2.1901 -0.0360 32 1 3.3298 -3.4410 0.9076 33 1 5.0594 -4.6221 -0.7880 34 1 7.1115 -6.9448 -2.0267 35 1 2.3725 0.1135 3.4940 36 1 0.9429 -0.3101 5.4536 37 1 -0.9551 -1.8692 5.2790 38 1 -1.4195 -3.0095 3.1466 39 1 0.0133 -2.5898 1.1884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081574888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:58 Heat of formation + Delta-G solvation = 5.850749 kcal Electronic energy + Delta-G solvation = -20803.885302 eV Core-core repulsion = 17711.550808 eV Total energy + Delta-G solvation = -3092.334493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.96308 -39.94789 -39.10175 -35.97719 -33.49178 -33.03492 -32.03828 -31.62736 -29.11460 -26.84995 -26.56207 -24.72818 -23.13438 -22.45768 -21.10420 -19.95463 -19.68264 -18.02067 -17.51870 -17.21979 -16.57997 -16.45027 -15.93188 -15.72673 -15.55152 -15.14141 -14.93062 -14.33847 -14.14601 -13.85458 -13.64918 -13.48786 -13.36164 -13.17504 -12.99191 -12.86302 -12.44951 -12.25138 -12.14332 -11.96834 -11.81601 -11.57713 -11.52326 -11.23513 -10.36709 -10.03861 -9.77062 -9.68452 -9.47077 -8.48663 -5.97762 0.52316 0.62613 1.36136 1.39765 1.52840 2.02278 2.27053 2.77781 2.99566 3.17588 3.31363 3.48769 3.84422 4.01852 4.10524 4.19163 4.24117 4.29483 4.32496 4.42226 4.45332 4.50375 4.57649 4.72983 4.83001 4.84111 4.98372 5.06271 5.12646 5.18400 5.27074 5.36620 5.39429 5.50793 5.67524 5.74352 5.81037 5.95250 6.15027 6.23668 6.57837 7.10355 7.53089 8.09005 8.68955 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.027562 B = 0.003926 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.636489 B = 7129.640691 C = 7506.848562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 H 0.111 0.889 4 C 0.007 3.993 5 N -0.457 5.457 6 C 0.023 3.977 7 C 0.443 3.557 8 O -0.617 6.617 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.078 0.922 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.269 1.269 16 H -0.270 1.270 17 H -0.274 1.274 18 C 0.065 3.935 19 H 0.100 0.900 20 C -0.075 4.075 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.138 4.138 25 C -0.106 4.106 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.395 0.605 34 H 0.278 0.722 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 13.942 12.657 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.110 4.110 3 H 0.129 0.871 4 C -0.122 4.122 5 N -0.180 5.180 6 C -0.108 4.108 7 C 0.230 3.770 8 O -0.503 6.503 9 N -0.212 5.212 10 C -0.463 4.463 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.195 1.195 16 H -0.194 1.194 17 H -0.199 1.199 18 C -0.044 4.044 19 H 0.118 0.882 20 C -0.075 4.075 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.156 4.156 25 C -0.124 4.124 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.229 0.771 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.445 13.316 12.127 19.892 hybrid contribution 1.322 -0.638 -0.673 1.615 sum -7.122 12.678 11.454 18.511 Atomic orbital electron populations 1.21464 0.92811 1.01579 1.01939 1.22608 0.97136 0.97966 0.93274 0.87128 1.23726 1.00464 0.91404 0.96561 1.68761 1.32430 1.12054 1.04731 1.22337 0.94288 0.97411 0.96814 1.20660 0.83303 0.84120 0.88889 1.90489 1.37480 1.72278 1.50035 1.41942 1.20393 1.34584 1.24258 1.19654 1.06684 1.16853 1.03158 0.90434 1.26040 0.94463 0.99097 1.01575 1.69675 1.09779 1.39026 1.37713 0.84927 0.78341 0.77536 0.77529 1.19474 1.19431 1.19870 1.22556 0.98849 0.91813 0.91207 0.88212 1.19575 0.96099 0.97677 0.94163 1.21218 1.00522 1.00089 0.91945 1.21394 0.95239 0.98673 0.99137 1.21426 0.98304 0.97042 0.97768 1.21380 1.00169 1.00616 0.93477 1.21109 0.95034 0.97576 0.98723 0.91765 0.91491 0.93739 0.91341 0.91796 0.90362 0.88363 0.77097 0.91259 0.84320 0.83724 0.84227 0.85596 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.26 71.98 0.59 -2.20 16 2 C -0.09 -2.11 4.67 -10.45 -0.05 -2.16 16 3 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 4 C 0.01 0.23 6.24 83.57 0.52 0.75 16 5 N -0.46 -15.41 4.57 -911.13 -4.16 -19.57 16 6 C 0.02 0.85 5.31 85.56 0.45 1.30 16 7 C 0.44 21.93 7.62 87.66 0.67 22.60 16 8 O -0.62 -35.29 15.34 -3.08 -0.05 -35.34 16 9 N -0.57 -30.43 5.29 -306.99 -1.62 -32.05 16 10 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 11 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 12 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 13 N -0.92 -50.50 13.05 21.66 0.28 -50.21 16 14 Si 0.99 43.62 29.55 68.60 2.03 45.64 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 C 0.06 1.62 3.24 41.44 0.13 1.76 16 19 H 0.10 2.16 7.77 -2.39 -0.02 2.14 16 20 C -0.07 -1.83 4.35 -19.86 -0.09 -1.91 16 21 C -0.12 -2.36 9.74 22.27 0.22 -2.14 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 24 C -0.14 -3.20 10.05 22.27 0.22 -2.98 16 25 C -0.11 -2.89 7.84 22.27 0.17 -2.72 16 26 H 0.06 1.39 7.26 -2.39 -0.02 1.37 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.26 6.95 -2.39 -0.02 1.24 16 29 H 0.07 2.05 7.70 -2.39 -0.02 2.03 16 30 H 0.06 2.33 8.11 -2.39 -0.02 2.31 16 31 H 0.08 2.48 7.56 -2.39 -0.02 2.46 16 32 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.40 19.92 7.90 -92.70 -0.73 19.19 16 34 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.11 3.52 6.73 -2.91 -0.02 3.50 16 Total: -1.00 -68.87 323.81 1.38 -67.49 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.32 Total: 34.75 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 4.58 Total: -10.71 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -5.50 Total: -101.84 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.05 Total: -35.34 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.87 1.38 -67.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081574888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.343 kcal (2) G-P(sol) polarization free energy of solvation -68.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds