Wall clock time and date at job start Mon Mar 30 2020 01:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.69401 * 2 1 4 4 C 1.54598 * 110.77945 * 236.50063 * 2 1 3 5 5 C 1.51582 * 102.82579 * 216.15808 * 4 2 1 6 6 C 1.37921 * 131.55865 * 196.20317 * 5 4 2 7 7 C 1.38302 * 120.07683 * 179.56872 * 6 5 4 8 8 C 1.38305 * 119.88354 * 359.80802 * 7 6 5 9 9 C 1.37909 * 120.26588 * 0.61629 * 8 7 6 10 10 C 1.38965 * 107.95365 * 16.03570 * 5 4 2 11 11 N 1.40037 * 110.96033 * 0.65760 * 10 5 4 12 12 C 1.46904 * 111.00052 * 103.52886 * 11 10 5 13 13 C 1.52998 * 109.47230 * 69.87021 * 12 11 10 14 14 N 1.46502 * 109.47009 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99835 * 180.02562 * 14 13 12 16 16 O 1.21688 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.46372 * 119.99804 * 179.97438 * 15 14 13 18 18 H 1.07996 * 120.00299 * 0.02562 * 17 15 14 19 19 C 1.40047 * 119.99862 * 179.97438 * 17 15 14 20 20 N 1.30670 * 120.00311 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 120.00122 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46886 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47413 * 120.00016 * 21 19 17 24 24 H 1.48506 * 109.46825 * 240.00105 * 21 19 17 25 25 H 1.08996 * 109.46904 * 296.70688 * 1 2 3 26 26 H 1.08995 * 109.46588 * 56.70538 * 1 2 3 27 27 H 1.09000 * 109.46861 * 176.70819 * 1 2 3 28 28 H 1.08994 * 110.73997 * 334.48616 * 4 2 1 29 29 H 1.08994 * 110.74342 * 97.64678 * 4 2 1 30 30 H 1.07991 * 119.95932 * 359.58786 * 6 5 4 31 31 H 1.07998 * 120.06011 * 180.02562 * 7 6 5 32 32 H 1.07996 * 119.86999 * 180.38381 * 8 7 6 33 33 H 1.08002 * 119.90552 * 179.68453 * 9 8 7 34 34 H 1.09003 * 109.47086 * 189.87689 * 12 11 10 35 35 H 1.09009 * 109.46983 * 309.86820 * 12 11 10 36 36 H 1.08995 * 109.47037 * 300.00195 * 13 12 11 37 37 H 1.08998 * 109.46886 * 60.00564 * 13 12 11 38 38 H 0.96997 * 119.99944 * 359.97438 * 14 13 12 39 39 H 0.96998 * 120.00429 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0196 0.0000 4 6 2.0785 -0.7978 -1.2053 5 6 3.3136 -1.4649 -0.6333 6 6 4.3947 -2.0657 -1.2437 7 6 5.4138 -2.6015 -0.4775 8 6 5.3490 -2.5304 0.9022 9 6 4.2660 -1.9385 1.5176 10 6 3.2346 -1.3964 0.7524 11 7 2.0548 -0.7590 1.1559 12 6 1.0675 -1.7345 1.6372 13 6 1.5385 -2.3224 2.9689 14 7 0.5541 -3.2957 3.4484 15 6 0.7596 -3.9446 4.6118 16 8 1.7629 -3.7223 5.2635 17 6 -0.2242 -4.9166 5.0912 18 1 -1.1145 -5.1141 4.5126 19 6 -0.0105 -5.5912 6.2997 20 7 1.0673 -5.3533 6.9991 21 14 -1.2657 -6.8322 6.9113 22 1 -2.3884 -6.9189 5.9431 23 1 -0.6216 -8.1636 7.0435 24 1 -1.7852 -6.4001 8.2337 25 1 -0.3633 0.4618 0.9180 26 1 -0.3632 0.5641 -0.8590 27 1 -0.3633 -1.0260 -0.0590 28 1 1.3554 -1.5432 -1.5361 29 1 2.3423 -0.1280 -2.0237 30 1 4.4456 -2.1174 -2.3212 31 1 6.2604 -3.0714 -0.9558 32 1 6.1479 -2.9433 1.5001 33 1 4.2190 -1.8908 2.5955 34 1 0.1065 -1.2396 1.7780 35 1 0.9601 -2.5345 0.9045 36 1 2.4994 -2.8173 2.8279 37 1 1.6457 -1.5225 3.7014 38 1 -0.2458 -3.4726 2.9291 39 1 1.2151 -5.8203 7.8363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153685388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:31 Heat of formation + Delta-G solvation = 3.520540 kcal Electronic energy + Delta-G solvation = -20827.352569 eV Core-core repulsion = 17734.917030 eV Total energy + Delta-G solvation = -3092.435539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02301 -37.44378 -36.95953 -33.94287 -32.47045 -31.87762 -31.17860 -29.75282 -27.68832 -26.45815 -25.76206 -22.65856 -21.96798 -21.14747 -20.02724 -19.55174 -17.30347 -16.41740 -16.21471 -15.83769 -15.37875 -15.06355 -14.55160 -14.36557 -13.98441 -13.62905 -13.43130 -13.16463 -12.98880 -12.51966 -12.36307 -12.18553 -12.12433 -11.78497 -11.38439 -11.24256 -11.18041 -11.07578 -10.97684 -10.77031 -10.48773 -10.41244 -10.17325 -9.30521 -8.83952 -8.73211 -7.85905 -7.58414 -7.45271 -6.16214 -4.61514 1.36287 1.46275 3.14380 3.22226 3.26697 3.53723 3.80949 4.13580 4.47943 4.59870 4.62245 4.71906 4.99620 5.07309 5.11868 5.16706 5.29422 5.35835 5.42182 5.47641 5.51066 5.58921 5.66972 5.72777 5.83389 5.87563 5.92368 5.97912 6.14861 6.40932 6.46156 6.57449 6.59346 6.63865 6.81878 7.03219 7.35139 7.45719 7.95239 8.12646 8.35429 9.04966 9.56536 10.63041 10.81795 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.004216 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.796399 B = 6639.254920 C = 7384.631548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.078 3.922 3 H 0.097 0.903 4 C -0.105 4.105 5 C -0.145 4.145 6 C -0.095 4.095 7 C -0.135 4.135 8 C -0.103 4.103 9 C -0.103 4.103 10 C 0.096 3.904 11 N -0.487 5.487 12 C 0.045 3.955 13 C 0.132 3.868 14 N -0.767 5.767 15 C 0.555 3.445 16 O -0.580 6.580 17 C -0.546 4.546 18 H 0.067 0.933 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.907 3.093 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.378 0.622 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 8.217 -17.156 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.029 4.029 3 H 0.115 0.885 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.113 4.113 7 C -0.154 4.154 8 C -0.122 4.122 9 C -0.123 4.123 10 C 0.000 4.000 11 N -0.205 5.205 12 C -0.081 4.081 13 C 0.006 3.994 14 N -0.423 5.423 15 C 0.359 3.641 16 O -0.462 6.462 17 C -0.583 4.583 18 H 0.086 0.914 19 C -0.132 4.132 20 N -0.397 5.397 21 Si 0.732 3.268 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.108 0.892 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.209 0.791 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.853 8.713 -16.040 18.476 hybrid contribution -1.072 -1.195 -0.584 1.708 sum 1.781 7.518 -16.624 18.332 Atomic orbital electron populations 1.22099 0.93640 1.02797 1.02838 1.22689 0.95325 0.98038 0.86888 0.88524 1.21751 0.94631 0.99029 0.98852 1.20956 0.97075 1.01927 0.94771 1.20320 0.93188 0.98438 0.99369 1.21018 0.99051 1.01388 0.93946 1.20981 0.97790 0.98727 0.94706 1.20756 0.92284 0.98783 1.00479 1.19535 0.92636 0.95666 0.92177 1.60169 1.02959 1.24385 1.32958 1.22530 0.95169 0.93302 0.97053 1.20915 0.93390 0.92467 0.92597 1.46073 1.24171 1.45761 1.26334 1.18211 0.86990 0.80643 0.78241 1.90597 1.30885 1.67840 1.56901 1.20914 1.06796 1.23718 1.06851 0.91428 1.25703 0.95207 0.96301 0.95983 1.70032 1.23506 1.34865 1.11302 0.86331 0.81082 0.80355 0.79060 1.18808 1.20180 1.20160 0.91065 0.91561 0.91732 0.90146 0.89942 0.86546 0.85991 0.85550 0.85110 0.89184 0.94088 0.92942 0.92647 0.79110 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 7.85 37.16 0.29 -1.14 16 2 C 0.08 0.86 3.99 -66.32 -0.26 0.60 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.10 -1.10 6.51 -26.61 -0.17 -1.27 16 5 C -0.14 -1.90 6.23 -104.03 -0.65 -2.55 16 6 C -0.09 -1.13 10.03 -39.67 -0.40 -1.53 16 7 C -0.14 -1.61 10.06 -39.53 -0.40 -2.01 16 8 C -0.10 -1.39 10.02 -39.68 -0.40 -1.78 16 9 C -0.10 -1.61 8.54 -39.27 -0.34 -1.95 16 10 C 0.10 1.45 5.29 -83.41 -0.44 1.01 16 11 N -0.49 -7.07 5.06 -161.57 -0.82 -7.88 16 12 C 0.04 0.69 3.82 -3.82 -0.01 0.68 16 13 C 0.13 2.67 5.53 -4.04 -0.02 2.65 16 14 N -0.77 -17.64 5.55 -61.72 -0.34 -17.99 16 15 C 0.56 16.18 7.75 -12.99 -0.10 16.08 16 16 O -0.58 -19.22 15.02 5.20 0.08 -19.14 16 17 C -0.55 -15.65 9.54 -35.63 -0.34 -15.99 16 18 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 19 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 20 N -0.77 -23.38 11.83 55.55 0.66 -22.72 16 21 Si 0.91 20.32 29.56 -169.99 -5.02 15.29 16 22 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H 0.07 0.68 7.62 -51.93 -0.40 0.29 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.61 6.68 -51.93 -0.35 0.27 16 28 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.13 2.20 7.15 -52.49 -0.38 1.82 16 34 H 0.09 1.25 5.78 -51.93 -0.30 0.95 16 35 H 0.04 0.63 7.98 -51.92 -0.41 0.21 16 36 H 0.05 1.15 5.55 -51.93 -0.29 0.86 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.38 7.53 8.45 -40.82 -0.35 7.19 16 39 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -35.20 318.94 -9.36 -44.56 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.38 Total: 7.89 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -3.34 Total: -4.82 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.50 Total: -48.59 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.08 Total: -19.14 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.20 -9.36 -44.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153685388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.078 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds