Wall clock time and date at job start Mon Mar 30 2020 01:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.69401 * 2 1 4 4 C 1.54598 * 110.77945 * 236.50063 * 2 1 3 5 5 C 1.51582 * 102.82579 * 216.15808 * 4 2 1 6 6 C 1.37921 * 131.55865 * 196.20317 * 5 4 2 7 7 C 1.38302 * 120.07683 * 179.56872 * 6 5 4 8 8 C 1.38305 * 119.88354 * 359.80802 * 7 6 5 9 9 C 1.37909 * 120.26588 * 0.61629 * 8 7 6 10 10 C 1.38965 * 107.95365 * 16.03570 * 5 4 2 11 11 N 1.40037 * 110.96033 * 0.65760 * 10 5 4 12 12 C 1.46904 * 111.00052 * 103.52886 * 11 10 5 13 13 C 1.52998 * 109.47230 * 69.87021 * 12 11 10 14 14 N 1.46502 * 109.47009 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99835 * 180.02562 * 14 13 12 16 16 O 1.21688 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.46372 * 119.99804 * 179.97438 * 15 14 13 18 18 H 1.07996 * 120.00299 * 0.02562 * 17 15 14 19 19 C 1.40047 * 119.99862 * 179.97438 * 17 15 14 20 20 N 1.30670 * 120.00311 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 120.00122 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46886 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47413 * 120.00016 * 21 19 17 24 24 H 1.48506 * 109.46825 * 240.00105 * 21 19 17 25 25 H 1.08996 * 109.46904 * 296.70688 * 1 2 3 26 26 H 1.08995 * 109.46588 * 56.70538 * 1 2 3 27 27 H 1.09000 * 109.46861 * 176.70819 * 1 2 3 28 28 H 1.08994 * 110.73997 * 334.48616 * 4 2 1 29 29 H 1.08994 * 110.74342 * 97.64678 * 4 2 1 30 30 H 1.07991 * 119.95932 * 359.58786 * 6 5 4 31 31 H 1.07998 * 120.06011 * 180.02562 * 7 6 5 32 32 H 1.07996 * 119.86999 * 180.38381 * 8 7 6 33 33 H 1.08002 * 119.90552 * 179.68453 * 9 8 7 34 34 H 1.09003 * 109.47086 * 189.87689 * 12 11 10 35 35 H 1.09009 * 109.46983 * 309.86820 * 12 11 10 36 36 H 1.08995 * 109.47037 * 300.00195 * 13 12 11 37 37 H 1.08998 * 109.46886 * 60.00564 * 13 12 11 38 38 H 0.96997 * 119.99944 * 359.97438 * 14 13 12 39 39 H 0.96998 * 120.00429 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9152 1.0196 0.0000 4 6 2.0785 -0.7978 -1.2053 5 6 3.3136 -1.4649 -0.6333 6 6 4.3947 -2.0657 -1.2437 7 6 5.4138 -2.6015 -0.4775 8 6 5.3490 -2.5304 0.9022 9 6 4.2660 -1.9385 1.5176 10 6 3.2346 -1.3964 0.7524 11 7 2.0548 -0.7590 1.1559 12 6 1.0675 -1.7345 1.6372 13 6 1.5385 -2.3224 2.9689 14 7 0.5541 -3.2957 3.4484 15 6 0.7596 -3.9446 4.6118 16 8 1.7629 -3.7223 5.2635 17 6 -0.2242 -4.9166 5.0912 18 1 -1.1145 -5.1141 4.5126 19 6 -0.0105 -5.5912 6.2997 20 7 1.0673 -5.3533 6.9991 21 14 -1.2657 -6.8322 6.9113 22 1 -2.3884 -6.9189 5.9431 23 1 -0.6216 -8.1636 7.0435 24 1 -1.7852 -6.4001 8.2337 25 1 -0.3633 0.4618 0.9180 26 1 -0.3632 0.5641 -0.8590 27 1 -0.3633 -1.0260 -0.0590 28 1 1.3554 -1.5432 -1.5361 29 1 2.3423 -0.1280 -2.0237 30 1 4.4456 -2.1174 -2.3212 31 1 6.2604 -3.0714 -0.9558 32 1 6.1479 -2.9433 1.5001 33 1 4.2190 -1.8908 2.5955 34 1 0.1065 -1.2396 1.7780 35 1 0.9601 -2.5345 0.9045 36 1 2.4994 -2.8173 2.8279 37 1 1.6457 -1.5225 3.7014 38 1 -0.2458 -3.4726 2.9291 39 1 1.2151 -5.8203 7.8363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153685388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:31 Heat of formation + Delta-G solvation = -21.636224 kcal Electronic energy + Delta-G solvation = -20828.443448 eV Core-core repulsion = 17734.917030 eV Total energy + Delta-G solvation = -3093.526418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.04467 -39.40896 -38.16212 -35.69500 -34.55488 -33.29481 -32.09936 -30.99763 -29.29661 -27.74462 -27.21895 -24.12320 -22.97296 -22.24230 -21.62784 -21.02623 -19.25581 -17.67769 -17.38804 -17.26852 -16.86210 -16.45047 -15.97862 -15.83036 -15.57534 -15.02814 -14.65523 -14.34456 -14.22834 -14.00921 -13.75906 -13.44598 -13.09801 -13.04317 -12.91266 -12.70398 -12.65820 -12.61702 -12.23138 -12.08303 -11.98624 -11.94147 -11.67131 -10.95969 -10.35736 -9.91307 -9.77711 -9.51710 -8.89885 -8.30767 -6.87899 0.33740 0.41922 1.40000 1.40497 1.58793 2.22458 2.45544 2.46116 2.79006 3.24982 3.57669 3.60474 3.77499 3.89379 3.96488 4.04865 4.12169 4.21643 4.35320 4.40938 4.49472 4.54147 4.60992 4.74336 4.81128 4.87019 4.91226 4.96619 5.08345 5.19931 5.27493 5.30764 5.43789 5.49814 5.57181 5.81379 5.85273 5.94767 6.18551 6.23460 6.29690 6.84869 7.52117 8.46926 8.65865 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.004216 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.796399 B = 6639.254920 C = 7384.631548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.075 3.925 3 H 0.103 0.897 4 C -0.097 4.097 5 C -0.148 4.148 6 C -0.094 4.094 7 C -0.131 4.131 8 C -0.117 4.117 9 C -0.135 4.135 10 C 0.069 3.931 11 N -0.505 5.505 12 C 0.066 3.934 13 C 0.138 3.862 14 N -0.753 5.753 15 C 0.536 3.464 16 O -0.634 6.634 17 C -0.572 4.572 18 H 0.091 0.909 19 C 0.027 3.973 20 N -0.824 5.824 21 Si 1.002 2.998 22 H -0.245 1.245 23 H -0.269 1.269 24 H -0.268 1.268 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.030 0.970 37 H 0.028 0.972 38 H 0.396 0.604 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 7.733 -19.979 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 H 0.121 0.879 4 C -0.135 4.135 5 C -0.151 4.151 6 C -0.112 4.112 7 C -0.149 4.149 8 C -0.135 4.135 9 C -0.155 4.155 10 C -0.027 4.027 11 N -0.223 5.223 12 C -0.060 4.060 13 C 0.013 3.987 14 N -0.408 5.408 15 C 0.340 3.660 16 O -0.521 6.521 17 C -0.608 4.608 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.453 5.453 21 Si 0.820 3.180 22 H -0.167 1.167 23 H -0.193 1.193 24 H -0.193 1.193 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.127 0.873 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.153 0.847 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.230 0.770 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.947 8.262 -18.933 20.679 hybrid contribution -0.387 -0.981 0.251 1.084 sum 0.560 7.281 -18.682 20.059 Atomic orbital electron populations 1.22087 0.92018 1.03121 1.03789 1.22872 0.96648 0.97818 0.85781 0.87944 1.21794 0.93363 0.99323 0.98982 1.21362 0.98342 1.01556 0.93842 1.20761 0.92306 0.97079 1.01087 1.21401 1.00009 1.00482 0.93012 1.21188 0.97462 0.98788 0.96086 1.20749 0.94318 1.01198 0.99201 1.19706 0.92782 0.96772 0.93464 1.60116 1.02758 1.24182 1.35292 1.22270 0.95988 0.93820 0.93928 1.20893 0.92181 0.90887 0.94779 1.45708 1.25070 1.45107 1.24919 1.18695 0.86644 0.81273 0.79394 1.90552 1.32928 1.69646 1.58979 1.21465 1.07469 1.23979 1.07935 0.89132 1.27036 0.97599 0.98470 0.95697 1.70207 1.26366 1.36593 1.12144 0.84922 0.77787 0.76558 0.78686 1.16749 1.19349 1.19281 0.91714 0.88832 0.91888 0.89209 0.87264 0.83219 0.82890 0.84727 0.88432 0.87260 0.93576 0.95136 0.95351 0.77033 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 7.85 71.98 0.57 -1.82 16 2 C 0.07 1.51 3.99 45.27 0.18 1.69 16 3 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 4 C -0.10 -1.73 6.51 30.67 0.20 -1.53 16 5 C -0.15 -3.63 6.23 -19.48 -0.12 -3.75 16 6 C -0.09 -1.99 10.03 22.21 0.22 -1.77 16 7 C -0.13 -2.90 10.06 22.30 0.22 -2.67 16 8 C -0.12 -3.24 10.02 22.21 0.22 -3.02 16 9 C -0.13 -4.54 8.54 22.47 0.19 -4.35 16 10 C 0.07 2.12 5.29 38.29 0.20 2.32 16 11 N -0.50 -14.73 5.06 -665.08 -3.36 -18.09 16 12 C 0.07 2.03 3.82 86.30 0.33 2.36 16 13 C 0.14 5.94 5.53 86.38 0.48 6.41 16 14 N -0.75 -35.71 5.55 -467.41 -2.59 -38.31 16 15 C 0.54 32.47 7.75 86.36 0.67 33.14 16 16 O -0.63 -44.58 15.02 -4.31 -0.06 -44.64 16 17 C -0.57 -33.16 9.54 24.83 0.24 -32.93 16 18 H 0.09 4.66 7.85 -2.91 -0.02 4.63 16 19 C 0.03 1.52 5.50 85.30 0.47 1.99 16 20 N -0.82 -51.71 11.83 21.84 0.26 -51.45 16 21 Si 1.00 41.42 29.56 68.60 2.03 43.45 16 22 H -0.24 -9.25 7.11 99.48 0.71 -8.55 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 25 H 0.06 1.11 7.62 -2.39 -0.02 1.09 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.01 6.68 -2.39 -0.02 1.00 16 28 H 0.09 1.47 7.86 -2.39 -0.02 1.46 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.15 2.16 8.06 -2.92 -0.02 2.14 16 31 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.10 3.79 7.15 -2.91 -0.02 3.77 16 34 H 0.11 2.92 5.78 -2.39 -0.01 2.91 16 35 H 0.05 1.38 7.98 -2.38 -0.02 1.36 16 36 H 0.03 1.45 5.55 -2.39 -0.01 1.44 16 37 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.40 15.75 8.45 -92.71 -0.78 14.97 16 39 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 Total: -1.00 -81.32 318.94 0.61 -80.70 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: 0.28 Total: 32.26 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 4.07 Total: -3.92 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -5.70 Total: -107.85 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.06 Total: -44.64 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -81.32 0.61 -80.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153685388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.068 kcal (2) G-P(sol) polarization free energy of solvation -81.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds