Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 108.96949 * 2 1 4 4 C 1.52953 * 109.17221 * 119.17989 * 2 1 3 5 5 N 1.46934 * 110.31354 * 183.60880 * 4 2 1 6 6 C 1.46899 * 110.99788 * 146.29972 * 5 4 2 7 7 C 1.39738 * 110.56409 * 269.94124 * 5 4 2 8 8 C 1.39100 * 119.80509 * 253.62633 * 7 5 4 9 9 C 1.38086 * 119.79186 * 177.78340 * 8 7 5 10 10 C 1.38313 * 120.31228 * 0.05673 * 9 8 7 11 11 C 1.38428 * 120.03370 * 0.37099 * 10 9 8 12 12 C 1.37811 * 119.70402 * 359.91878 * 11 10 9 13 13 C 1.51413 * 120.51940 * 179.17173 * 12 11 10 14 14 N 1.45972 * 109.03585 * 241.08392 * 2 1 3 15 15 C 1.34777 * 119.86221 * 356.49109 * 14 2 1 16 16 O 1.21687 * 119.99607 * 353.85406 * 15 14 2 17 17 C 1.46376 * 119.99787 * 173.84703 * 15 14 2 18 18 H 1.07997 * 120.00286 * 34.69937 * 17 15 14 19 19 C 1.40050 * 119.99862 * 214.68668 * 17 15 14 20 20 N 1.30670 * 120.00131 * 5.44612 * 19 17 15 21 21 Si 1.86794 * 119.99994 * 185.43986 * 19 17 15 22 22 H 1.48498 * 109.47639 * 270.00425 * 21 19 17 23 23 H 1.48501 * 109.47212 * 30.00611 * 21 19 17 24 24 H 1.48499 * 109.47157 * 150.00180 * 21 19 17 25 25 H 1.08999 * 109.47481 * 184.17421 * 1 2 3 26 26 H 1.09006 * 109.46879 * 304.17655 * 1 2 3 27 27 H 1.09000 * 109.47528 * 64.16608 * 1 2 3 28 28 H 1.09002 * 109.44286 * 63.28858 * 4 2 1 29 29 H 1.08994 * 109.10567 * 303.71652 * 4 2 1 30 30 H 1.09007 * 109.46492 * 187.34843 * 6 5 4 31 31 H 1.08999 * 109.46843 * 307.34106 * 6 5 4 32 32 H 1.08992 * 109.47554 * 67.34835 * 6 5 4 33 33 H 1.08000 * 120.10578 * 357.76392 * 8 7 5 34 34 H 1.07991 * 119.84351 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.98296 * 180.39363 * 10 9 8 36 36 H 1.08002 * 120.14880 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.71467 * 354.26700 * 13 12 11 38 38 H 1.09001 * 109.74704 * 233.65594 * 13 12 11 39 39 H 0.97006 * 119.99684 * 355.11756 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8843 1.0308 0.0000 4 6 2.0322 -0.7044 1.2614 5 7 3.4987 -0.6433 1.3300 6 6 3.9568 -0.5439 2.7222 7 6 4.0663 -1.7505 0.6938 8 6 4.6357 -2.7675 1.4531 9 6 5.1554 -3.8828 0.8264 10 6 5.1134 -3.9923 -0.5518 11 6 4.5555 -2.9779 -1.3107 12 6 4.0418 -1.8616 -0.6867 13 6 3.4442 -0.7328 -1.4998 14 7 2.0060 -0.6672 -1.2079 15 6 1.1221 -1.2206 -2.0616 16 8 -0.0591 -1.2625 -1.7719 17 6 1.5829 -1.7708 -3.3374 18 1 2.5485 -2.2502 -3.4014 19 6 0.7714 -1.6759 -4.4748 20 7 -0.3483 -1.0042 -4.4244 21 14 1.2898 -2.5094 -6.0641 22 1 2.1063 -1.5690 -6.8729 23 1 2.0930 -3.7182 -5.7500 24 1 0.0821 -2.9036 -6.8331 25 1 -0.3634 -1.0249 0.0748 26 1 -0.3633 0.5773 0.8503 27 1 -0.3634 0.4478 -0.9249 28 1 1.7150 -1.7471 1.2454 29 1 1.6094 -0.2122 2.1371 30 1 5.0327 -0.3693 2.7389 31 1 3.4467 0.2842 3.2142 32 1 3.7312 -1.4726 3.2462 33 1 4.6714 -2.6850 2.5293 34 1 5.5972 -4.6730 1.4150 35 1 5.5158 -4.8697 -1.0360 36 1 4.5221 -3.0612 -2.3870 37 1 3.5952 -0.9248 -2.5620 38 1 3.9183 0.2097 -1.2256 39 1 -0.6527 -0.6313 -3.5822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153961678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = 18.897284 kcal Electronic energy + Delta-G solvation = -22230.589245 eV Core-core repulsion = 19138.820492 eV Total energy + Delta-G solvation = -3091.768753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32561 -38.21347 -36.52120 -34.49570 -32.87373 -31.84381 -30.36089 -29.19338 -26.92336 -25.74703 -25.27090 -24.08102 -21.83403 -21.24055 -20.29215 -19.21770 -17.29117 -16.83754 -15.65249 -15.29379 -14.99880 -14.80571 -14.66316 -14.33434 -13.85535 -13.78717 -13.18162 -12.87294 -12.65654 -12.42137 -12.13966 -11.95788 -11.79579 -11.44494 -11.29635 -11.10256 -11.00491 -10.92214 -10.86793 -10.51608 -10.39724 -10.21891 -9.79062 -9.13777 -8.76387 -8.53815 -7.73521 -7.49955 -7.27721 -6.58996 -4.62292 1.60736 1.66726 3.27320 3.33153 3.49491 3.78004 4.09770 4.19225 4.46958 4.56211 5.04835 5.10511 5.15445 5.25016 5.31639 5.42159 5.53328 5.60005 5.68406 5.72542 5.73990 5.77904 5.91932 6.06838 6.10900 6.23953 6.29871 6.41806 6.47091 6.52979 6.70687 6.87375 6.93738 7.00057 7.22102 7.28588 7.45972 7.59066 7.93686 8.09529 8.43917 8.89798 9.41159 10.26841 10.67940 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.007513 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.492131 B = 3725.741330 C = 4876.357726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.154 3.846 3 H 0.057 0.943 4 C 0.048 3.952 5 N -0.497 5.497 6 C 0.023 3.977 7 C 0.109 3.891 8 C -0.175 4.175 9 C -0.110 4.110 10 C -0.141 4.141 11 C -0.084 4.084 12 C -0.093 4.093 13 C 0.169 3.831 14 N -0.624 5.624 15 C 0.568 3.432 16 O -0.604 6.604 17 C -0.615 4.615 18 H 0.069 0.931 19 C 0.049 3.951 20 N -0.836 5.836 21 Si 1.078 2.922 22 H -0.281 1.281 23 H -0.281 1.281 24 H -0.279 1.279 25 H 0.075 0.925 26 H 0.015 0.985 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.786 -1.022 9.844 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 H 0.075 0.925 4 C -0.079 4.079 5 N -0.213 5.213 6 C -0.125 4.125 7 C 0.013 3.987 8 C -0.195 4.195 9 C -0.129 4.129 10 C -0.159 4.159 11 C -0.103 4.103 12 C -0.096 4.096 13 C 0.045 3.955 14 N -0.358 5.358 15 C 0.376 3.624 16 O -0.492 6.492 17 C -0.652 4.652 18 H 0.087 0.913 19 C -0.171 4.171 20 N -0.468 5.468 21 Si 0.904 3.096 22 H -0.207 1.207 23 H -0.206 1.206 24 H -0.204 1.204 25 H 0.094 0.906 26 H 0.034 0.966 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.147 0.853 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.813 -0.714 8.242 12.835 hybrid contribution 0.495 -0.535 2.303 2.416 sum 10.308 -1.250 10.545 14.799 Atomic orbital electron populations 1.22202 0.92687 1.03166 0.99893 1.20728 0.95282 0.94741 0.84372 0.92536 1.22765 0.84437 1.00844 0.99813 1.59208 1.08317 1.38471 1.15341 1.22543 1.01439 1.00623 0.87879 1.18716 0.98007 0.89040 0.92976 1.21428 1.04435 0.94157 0.99525 1.20873 0.99973 0.97332 0.94752 1.21107 1.01740 0.99184 0.93903 1.21010 0.96489 0.92570 1.00274 1.20329 0.98948 0.97771 0.92596 1.20342 0.81394 0.94431 0.99355 1.47961 1.05544 1.59631 1.22623 1.18488 0.84113 0.76518 0.83278 1.90532 1.18465 1.63738 1.76417 1.21816 1.06523 1.42368 0.94528 0.91250 1.26534 0.93336 0.94144 1.03046 1.70170 1.19308 1.23702 1.33587 0.83469 0.76201 0.76185 0.73778 1.20717 1.20620 1.20435 0.90584 0.96640 0.90783 0.93373 0.90596 0.91100 0.91048 0.94746 0.86135 0.86750 0.86376 0.85324 0.88293 0.91430 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 7.52 37.15 0.28 -2.28 16 2 C 0.15 3.07 3.35 -68.24 -0.23 2.84 16 3 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.05 0.82 4.85 -3.83 -0.02 0.80 16 5 N -0.50 -7.82 4.39 -179.00 -0.78 -8.61 16 6 C 0.02 0.27 8.46 60.06 0.51 0.78 16 7 C 0.11 1.84 4.99 -83.83 -0.42 1.42 16 8 C -0.18 -2.58 9.01 -39.32 -0.35 -2.93 16 9 C -0.11 -1.53 10.03 -39.61 -0.40 -1.93 16 10 C -0.14 -2.06 10.06 -39.48 -0.40 -2.46 16 11 C -0.08 -1.42 9.70 -39.67 -0.38 -1.81 16 12 C -0.09 -1.70 5.45 -104.32 -0.57 -2.27 16 13 C 0.17 3.34 5.48 -4.63 -0.03 3.32 16 14 N -0.62 -14.14 2.68 -168.81 -0.45 -14.59 16 15 C 0.57 15.48 6.93 -12.99 -0.09 15.39 16 16 O -0.60 -17.80 9.96 5.20 0.05 -17.75 16 17 C -0.62 -16.87 8.15 -35.63 -0.29 -17.16 16 18 H 0.07 1.77 6.59 -52.49 -0.35 1.43 16 19 C 0.05 1.36 5.45 -17.37 -0.09 1.26 16 20 N -0.84 -25.11 13.52 55.55 0.75 -24.36 16 21 Si 1.08 23.44 29.94 -169.99 -5.09 18.35 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H 0.08 1.79 6.58 -51.93 -0.34 1.44 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 1.78 6.69 -51.93 -0.35 1.43 16 28 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 29 H 0.08 1.09 7.55 -51.93 -0.39 0.70 16 30 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 32 H 0.03 0.38 6.33 -51.93 -0.33 0.06 16 33 H 0.12 1.51 5.76 -52.49 -0.30 1.20 16 34 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.13 2.09 7.86 -52.49 -0.41 1.68 16 37 H 0.10 2.02 5.76 -51.93 -0.30 1.72 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.31 9.62 5.99 -40.82 -0.24 9.38 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -31.78 304.64 -8.57 -40.35 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.16 Total: 7.06 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.48 Total: -5.04 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.49 Total: -47.56 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.05 Total: -17.75 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.09 Total: 18.35 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.78 -8.57 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153961678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.247 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds