Wall clock time and date at job start Mon Mar 30 2020 01:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00261 * 2 1 4 4 N 1.46507 * 109.46680 * 125.00219 * 3 2 1 5 5 C 1.34775 * 119.99725 * 180.02562 * 4 3 2 6 6 O 1.21596 * 120.00015 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00181 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00556 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.08004 * 120.00387 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00036 * 359.97438 * 1 2 3 27 27 H 1.08011 * 119.99601 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47274 * 5.00346 * 3 2 1 29 29 H 1.09001 * 109.47565 * 244.99812 * 3 2 1 30 30 H 0.96998 * 120.00038 * 0.02562 * 4 3 2 31 31 H 0.97002 * 120.00072 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 33 33 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 34 34 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 35 35 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 36 36 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 37 37 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 38 38 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 39 39 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3317 1.1315 5 6 3.7784 2.4087 1.3335 6 8 3.7144 3.3581 0.5765 7 7 4.6338 2.4335 2.3747 8 6 5.4871 3.6040 2.5941 9 1 5.7830 4.0232 1.6323 10 6 6.7352 3.1864 3.3741 11 6 7.5595 2.2436 2.5357 12 1 7.2266 1.9700 1.5453 13 6 8.7418 1.7352 3.0305 14 7 9.4638 0.9167 2.2968 15 14 9.3178 2.2088 4.7432 16 1 8.7768 1.2424 5.7323 17 1 10.8020 2.1865 4.7900 18 1 8.8328 3.5741 5.0687 19 6 4.7263 4.6400 3.3808 20 6 3.8992 4.2504 4.4177 21 6 3.2047 5.2010 5.1422 22 6 3.3302 6.5404 4.8240 23 6 4.1532 6.9294 3.7837 24 6 4.8510 5.9792 3.0620 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 3.0451 0.5742 1.7351 31 1 4.6846 1.6763 2.9788 32 1 6.4373 2.6868 4.2960 33 1 7.3262 4.0701 3.6143 34 1 10.2953 0.5588 2.6451 35 1 3.7980 3.2037 4.6636 36 1 2.5620 4.8970 5.9553 37 1 2.7855 7.2828 5.3883 38 1 4.2516 7.9759 3.5354 39 1 5.4941 6.2832 2.2493 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158975392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:25 Heat of formation + Delta-G solvation = 10.052091 kcal Electronic energy + Delta-G solvation = -20657.666688 eV Core-core repulsion = 17565.514378 eV Total energy + Delta-G solvation = -3092.152310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80234 -38.65651 -36.00787 -34.94294 -32.84215 -32.46390 -30.89155 -30.47827 -29.26276 -26.14060 -24.61934 -22.29814 -21.74146 -20.71701 -20.30639 -19.72039 -17.80418 -17.11797 -16.48293 -16.04126 -15.50627 -14.92228 -14.72842 -14.35999 -14.29906 -13.78123 -13.52207 -13.22836 -13.05818 -12.91915 -12.55545 -12.39633 -12.27104 -11.87858 -11.25818 -11.25093 -11.04816 -10.73069 -10.49377 -10.20753 -9.93555 -9.86233 -9.55632 -9.31204 -8.84832 -8.62193 -8.57481 -8.33222 -8.22912 -6.10060 -4.09511 1.71192 1.74538 1.95022 3.25092 3.30855 3.34923 3.38154 3.74684 4.15955 4.38916 4.70861 4.79687 4.98494 5.20802 5.22135 5.24244 5.31287 5.47707 5.52787 5.71002 5.77363 5.85324 5.87447 6.06542 6.27533 6.34255 6.37449 6.45319 6.48041 6.77200 6.78574 6.79610 6.87700 6.96312 7.06813 7.30958 7.34524 7.50917 7.66751 8.45060 8.54316 8.96618 9.12866 9.50856 11.02799 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.010877 B = 0.006567 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.704963 B = 4262.628225 C = 6232.959543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.168 4.168 3 C 0.167 3.833 4 N -0.750 5.750 5 C 0.705 3.295 6 O -0.598 6.598 7 N -0.717 5.717 8 C 0.212 3.788 9 H 0.092 0.908 10 C -0.014 4.014 11 C -0.518 4.518 12 H 0.076 0.924 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.875 3.125 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.075 4.075 20 C -0.108 4.108 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.123 4.123 24 C -0.107 4.107 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.395 0.605 31 H 0.397 0.603 32 H 0.018 0.982 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.734 2.416 2.676 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.187 4.187 3 C 0.043 3.957 4 N -0.406 5.406 5 C 0.405 3.595 6 O -0.477 6.477 7 N -0.369 5.369 8 C 0.107 3.893 9 H 0.110 0.890 10 C -0.052 4.052 11 C -0.556 4.556 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.702 3.298 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.077 4.077 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.125 4.125 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.229 0.771 31 H 0.230 0.770 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.592 3.204 1.957 16.038 hybrid contribution 0.493 -0.673 1.454 1.676 sum -15.099 2.531 3.411 15.685 Atomic orbital electron populations 1.23919 0.95779 1.02141 0.99372 1.23090 0.96179 0.98477 1.00925 1.20160 0.91179 0.94755 0.89604 1.45034 1.43408 1.19812 1.32346 1.15952 0.79059 0.82679 0.81802 1.90877 1.72148 1.36272 1.48371 1.45029 1.41144 1.21097 1.29611 1.19822 0.88359 0.82316 0.98782 0.89024 1.19884 0.91907 0.97688 0.95682 1.21028 1.05206 1.26327 1.03076 0.90594 1.24990 0.96316 0.94599 0.97243 1.69908 1.14601 1.32030 1.37190 0.86854 0.78006 0.79724 0.85178 1.20320 1.21345 1.18904 1.20636 0.96317 0.95052 0.95685 1.20910 0.96950 0.99246 0.95542 1.21046 1.00182 0.93322 0.99878 1.21006 0.99991 0.95880 0.98369 1.21056 0.97608 0.99073 0.96357 1.21044 0.99371 0.92539 0.99571 0.88118 0.88292 0.86701 0.91600 0.90965 0.77136 0.76956 0.96340 0.94742 0.92678 0.86586 0.86759 0.86826 0.86540 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 14.32 29.02 0.42 -1.03 16 2 C -0.17 -1.62 9.63 -36.03 -0.35 -1.97 16 3 C 0.17 2.13 6.11 -5.19 -0.03 2.10 16 4 N -0.75 -10.75 5.55 -66.41 -0.37 -11.12 16 5 C 0.71 13.15 8.52 -86.92 -0.74 12.41 16 6 O -0.60 -13.37 16.01 5.28 0.08 -13.29 16 7 N -0.72 -13.07 4.02 -59.81 -0.24 -13.31 16 8 C 0.21 4.28 2.12 -69.08 -0.15 4.13 16 9 H 0.09 2.07 7.44 -51.92 -0.39 1.68 16 10 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 11 C -0.52 -13.95 9.39 -34.44 -0.32 -14.27 16 12 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16 15 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 19 C -0.08 -1.37 4.91 -104.63 -0.51 -1.88 16 20 C -0.11 -1.75 9.33 -39.58 -0.37 -2.12 16 21 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.24 16 23 C -0.12 -1.80 10.05 -39.59 -0.40 -2.19 16 24 C -0.11 -1.81 9.67 -39.59 -0.38 -2.20 16 25 H 0.10 0.68 8.06 -52.48 -0.42 0.25 16 26 H 0.10 0.79 7.84 -52.49 -0.41 0.38 16 27 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 28 H 0.07 0.87 7.79 -51.93 -0.40 0.46 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.40 4.65 8.48 -40.82 -0.35 4.31 16 31 H 0.40 6.50 8.62 -40.82 -0.35 6.15 16 32 H 0.02 0.40 7.58 -51.93 -0.39 0.01 16 33 H 0.03 0.80 7.19 -51.93 -0.37 0.42 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.12 1.73 7.71 -52.49 -0.40 1.33 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.99 8.04 -52.48 -0.42 1.56 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -32.73 336.35 -8.80 -41.52 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.62 Total: 11.04 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -3.83 Total: -10.03 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.16 Total: -50.53 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.73 -8.80 -41.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158975392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.576 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds