Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.34423 * 2 1 4 4 C 1.53748 * 110.41337 * 237.96080 * 2 1 3 5 5 C 1.51218 * 104.58052 * 241.39616 * 4 2 1 6 6 C 1.38189 * 130.96983 * 179.75566 * 5 4 2 7 7 C 1.38218 * 120.14898 * 180.02562 * 6 5 4 8 8 C 1.38299 * 119.83034 * 359.97082 * 7 6 5 9 9 C 1.37838 * 120.22007 * 0.02562 * 8 7 6 10 10 C 1.38563 * 108.55910 * 359.75326 * 5 4 2 11 11 N 1.39826 * 111.61960 * 0.02562 * 10 5 4 12 12 C 1.34779 * 124.98229 * 179.97438 * 11 10 5 13 13 O 1.21288 * 120.00313 * 180.02562 * 12 11 10 14 14 C 1.50696 * 119.99341 * 0.02603 * 12 11 10 15 15 N 1.46503 * 109.46943 * 179.97438 * 14 12 11 16 16 C 1.46503 * 120.00248 * 89.99464 * 15 14 12 17 17 C 1.36935 * 120.00439 * 269.99869 * 15 14 12 18 18 H 1.08003 * 119.99427 * 23.03674 * 17 15 14 19 19 C 1.38812 * 120.00481 * 203.04079 * 17 15 14 20 20 N 1.31621 * 119.99815 * 12.95591 * 19 17 15 21 21 Si 1.86795 * 120.00020 * 192.95542 * 19 17 15 22 22 H 1.48501 * 109.47419 * 89.99978 * 21 19 17 23 23 H 1.48501 * 109.47050 * 209.99997 * 21 19 17 24 24 H 1.48502 * 109.47293 * 330.00106 * 21 19 17 25 25 H 1.08999 * 109.46542 * 297.88430 * 1 2 3 26 26 H 1.09008 * 109.47016 * 57.87896 * 1 2 3 27 27 H 1.08991 * 109.47675 * 177.88098 * 1 2 3 28 28 H 1.08994 * 110.62568 * 122.51447 * 4 2 1 29 29 H 1.09002 * 110.30790 * 0.11289 * 4 2 1 30 30 H 1.07997 * 119.92377 * 359.97438 * 6 5 4 31 31 H 1.08001 * 120.08960 * 179.97438 * 7 6 5 32 32 H 1.07999 * 119.89318 * 179.97438 * 8 7 6 33 33 H 1.08004 * 119.85723 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.47193 * 299.99208 * 14 12 11 35 35 H 1.09000 * 109.47602 * 59.99844 * 14 12 11 36 36 H 1.08997 * 109.47027 * 95.12026 * 16 15 14 37 37 H 1.08994 * 109.47635 * 215.12711 * 16 15 14 38 38 H 1.09004 * 109.46973 * 335.12489 * 16 15 14 39 39 H 0.96996 * 120.00084 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0663 -0.7644 -1.2214 5 6 2.8557 -1.9132 -0.6351 6 6 3.5594 -2.9339 -1.2456 7 6 4.2103 -3.8829 -0.4800 8 6 4.1564 -3.8085 0.9000 9 6 3.4558 -2.7922 1.5132 10 6 2.7955 -1.8298 0.7467 11 7 2.0379 -0.7311 1.1640 12 6 1.8044 -0.3966 2.4486 13 8 1.1317 0.5785 2.7087 14 6 2.3793 -1.2343 3.5616 15 7 1.9856 -0.6664 4.8534 16 6 0.7438 -1.1020 5.4973 17 6 2.7782 0.2717 5.4591 18 1 3.4627 0.8628 4.8687 19 6 2.7021 0.4629 6.8319 20 7 2.0702 -0.4129 7.5843 21 14 3.4963 1.9632 7.6114 22 1 2.5156 3.0777 7.6520 23 1 3.9279 1.6330 8.9934 24 1 4.6768 2.3719 6.8084 25 1 -0.3632 0.4806 0.9084 26 1 -0.3633 0.5465 -0.8704 27 1 -0.3634 -1.0268 -0.0380 28 1 2.7141 -0.1247 -1.8207 29 1 1.2402 -1.1399 -1.8253 30 1 3.6001 -2.9906 -2.3233 31 1 4.7596 -4.6804 -0.9581 32 1 4.6643 -4.5498 1.4992 33 1 3.4172 -2.7400 2.5913 34 1 2.0009 -2.2534 3.4820 35 1 3.4665 -1.2433 3.4853 36 1 0.9636 -1.8970 6.2099 37 1 0.2910 -0.2600 6.0206 38 1 0.0530 -1.4733 4.7404 39 1 2.0173 -0.2795 8.5436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170778447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = 34.225345 kcal Electronic energy + Delta-G solvation = -21443.074178 eV Core-core repulsion = 18351.970099 eV Total energy + Delta-G solvation = -3091.104079 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03464 -38.34759 -36.44889 -35.02170 -33.01799 -31.18484 -30.81705 -29.47772 -27.40389 -26.41711 -25.82057 -23.24650 -21.98913 -21.63539 -20.63362 -19.35413 -16.94226 -16.75096 -16.34651 -15.81434 -15.40590 -14.88467 -14.28149 -14.26931 -14.01927 -13.56979 -13.32721 -13.14604 -12.84994 -12.76451 -12.38953 -12.26220 -11.95748 -11.72341 -11.43874 -11.26195 -11.02111 -10.89875 -10.72002 -10.69194 -10.39906 -10.08663 -10.00391 -9.89075 -9.37478 -8.75835 -8.54422 -7.57890 -6.82252 -5.75051 -3.21837 1.38557 1.43168 3.07217 3.20811 3.41078 3.46665 3.48232 3.88689 4.41935 4.50836 4.54206 4.96749 4.99461 5.05306 5.15055 5.35192 5.39435 5.46078 5.47859 5.52940 5.61365 5.62757 5.72110 5.94041 5.98808 6.04114 6.06631 6.16318 6.28302 6.33627 6.48628 6.58222 6.69994 6.73839 7.04111 7.38624 7.68248 7.80466 7.82908 8.32706 8.66240 9.18647 9.79041 10.26393 11.30116 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.005254 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.738311 B = 5327.494384 C = 5905.566609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 H 0.084 0.916 4 C -0.080 4.080 5 C -0.149 4.149 6 C -0.076 4.076 7 C -0.157 4.157 8 C -0.084 4.084 9 C -0.165 4.165 10 C 0.167 3.833 11 N -0.560 5.560 12 C 0.486 3.514 13 O -0.497 6.497 14 C 0.134 3.866 15 N -0.574 5.574 16 C 0.163 3.837 17 C -0.255 4.255 18 H 0.066 0.934 19 C 0.007 3.993 20 N -0.905 5.905 21 Si 0.908 3.092 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.143 0.857 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.037 0.963 37 H 0.044 0.956 38 H -0.004 1.004 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 -6.562 -18.198 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.026 3.974 3 H 0.102 0.898 4 C -0.118 4.118 5 C -0.153 4.153 6 C -0.094 4.094 7 C -0.176 4.176 8 C -0.102 4.102 9 C -0.186 4.186 10 C 0.069 3.931 11 N -0.285 5.285 12 C 0.274 3.726 13 O -0.367 6.367 14 C 0.001 3.999 15 N -0.293 5.293 16 C 0.019 3.981 17 C -0.384 4.384 18 H 0.084 0.916 19 C -0.191 4.191 20 N -0.549 5.549 21 Si 0.738 3.262 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.087 -5.857 -17.602 18.583 hybrid contribution 0.327 0.926 0.347 1.042 sum 1.414 -4.931 -17.255 18.002 Atomic orbital electron populations 1.22131 0.93981 1.02349 1.03370 1.21558 0.95241 0.96500 0.84119 0.89831 1.21176 0.99063 0.94574 0.96946 1.20017 1.03406 0.98981 0.92873 1.20315 0.96385 0.93302 0.99412 1.20929 1.02617 1.00104 0.93939 1.20890 0.97501 0.97162 0.94671 1.21256 1.00797 0.95198 1.01316 1.18429 0.92739 0.88678 0.93205 1.46850 1.49042 1.25796 1.06836 1.23894 0.80100 0.86881 0.81743 1.90640 1.36871 1.27034 1.82203 1.21093 0.99097 0.94369 0.85329 1.43671 1.22563 1.46930 1.16102 1.20861 0.84833 0.99173 0.93262 1.19136 1.17973 1.11533 0.89798 0.91605 1.24973 0.99813 0.98342 0.96015 1.70070 1.46307 1.34064 1.04494 0.86196 0.78965 0.82640 0.78375 1.21366 1.21622 1.20424 0.90640 0.91535 0.92449 0.89666 0.89493 0.86242 0.86030 0.85523 0.83995 0.90722 0.89611 0.94424 0.93715 0.98497 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.07 37.16 0.34 -1.80 16 2 C 0.13 1.81 3.64 -67.52 -0.25 1.57 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.08 -0.88 6.59 -27.24 -0.18 -1.05 16 5 C -0.15 -1.88 6.23 -104.27 -0.65 -2.53 16 6 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 7 C -0.16 -1.62 10.06 -39.57 -0.40 -2.02 16 8 C -0.08 -0.96 10.02 -39.71 -0.40 -1.36 16 9 C -0.16 -2.31 8.88 -39.21 -0.35 -2.65 16 10 C 0.17 2.50 6.59 -83.57 -0.55 1.95 16 11 N -0.56 -9.50 2.89 -105.84 -0.31 -9.81 16 12 C 0.49 10.17 7.66 -10.99 -0.08 10.09 16 13 O -0.50 -12.21 15.34 5.55 0.09 -12.12 16 14 C 0.13 2.83 3.95 -5.19 -0.02 2.81 16 15 N -0.57 -15.05 2.41 -182.50 -0.44 -15.49 16 16 C 0.16 4.21 8.98 59.85 0.54 4.75 16 17 C -0.26 -7.30 9.65 -15.06 -0.15 -7.44 16 18 H 0.07 1.88 7.86 -52.48 -0.41 1.47 16 19 C 0.01 0.20 5.10 -17.43 -0.09 0.11 16 20 N -0.91 -26.67 10.71 55.49 0.59 -26.08 16 21 Si 0.91 22.57 29.57 -169.99 -5.03 17.54 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.07 1.24 6.77 -51.93 -0.35 0.89 16 26 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.14 2.06 4.21 -52.48 -0.22 1.84 16 34 H 0.08 1.41 6.84 -51.93 -0.36 1.06 16 35 H 0.09 1.74 6.81 -51.93 -0.35 1.38 16 36 H 0.04 1.01 7.34 -51.93 -0.38 0.62 16 37 H 0.04 1.26 7.34 -51.93 -0.38 0.87 16 38 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -33.07 316.66 -8.32 -41.39 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.37 Total: -1.43 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.63 Total: 1.22 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.15 Total: -51.38 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.07 -8.32 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.616 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds