Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.34423 * 2 1 4 4 C 1.53748 * 110.41337 * 237.96080 * 2 1 3 5 5 C 1.51218 * 104.58052 * 241.39616 * 4 2 1 6 6 C 1.38189 * 130.96983 * 179.75566 * 5 4 2 7 7 C 1.38218 * 120.14898 * 180.02562 * 6 5 4 8 8 C 1.38299 * 119.83034 * 359.97082 * 7 6 5 9 9 C 1.37838 * 120.22007 * 0.02562 * 8 7 6 10 10 C 1.38563 * 108.55910 * 359.75326 * 5 4 2 11 11 N 1.39826 * 111.61960 * 0.02562 * 10 5 4 12 12 C 1.34779 * 124.98229 * 179.97438 * 11 10 5 13 13 O 1.21288 * 120.00313 * 180.02562 * 12 11 10 14 14 C 1.50696 * 119.99341 * 0.02603 * 12 11 10 15 15 N 1.46503 * 109.46943 * 179.97438 * 14 12 11 16 16 C 1.46503 * 120.00248 * 89.99464 * 15 14 12 17 17 C 1.36935 * 120.00439 * 269.99869 * 15 14 12 18 18 H 1.08003 * 119.99427 * 23.03674 * 17 15 14 19 19 C 1.38812 * 120.00481 * 203.04079 * 17 15 14 20 20 N 1.31621 * 119.99815 * 12.95591 * 19 17 15 21 21 Si 1.86795 * 120.00020 * 192.95542 * 19 17 15 22 22 H 1.48501 * 109.47419 * 89.99978 * 21 19 17 23 23 H 1.48501 * 109.47050 * 209.99997 * 21 19 17 24 24 H 1.48502 * 109.47293 * 330.00106 * 21 19 17 25 25 H 1.08999 * 109.46542 * 297.88430 * 1 2 3 26 26 H 1.09008 * 109.47016 * 57.87896 * 1 2 3 27 27 H 1.08991 * 109.47675 * 177.88098 * 1 2 3 28 28 H 1.08994 * 110.62568 * 122.51447 * 4 2 1 29 29 H 1.09002 * 110.30790 * 0.11289 * 4 2 1 30 30 H 1.07997 * 119.92377 * 359.97438 * 6 5 4 31 31 H 1.08001 * 120.08960 * 179.97438 * 7 6 5 32 32 H 1.07999 * 119.89318 * 179.97438 * 8 7 6 33 33 H 1.08004 * 119.85723 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.47193 * 299.99208 * 14 12 11 35 35 H 1.09000 * 109.47602 * 59.99844 * 14 12 11 36 36 H 1.08997 * 109.47027 * 95.12026 * 16 15 14 37 37 H 1.08994 * 109.47635 * 215.12711 * 16 15 14 38 38 H 1.09004 * 109.46973 * 335.12489 * 16 15 14 39 39 H 0.96996 * 120.00084 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0663 -0.7644 -1.2214 5 6 2.8557 -1.9132 -0.6351 6 6 3.5594 -2.9339 -1.2456 7 6 4.2103 -3.8829 -0.4800 8 6 4.1564 -3.8085 0.9000 9 6 3.4558 -2.7922 1.5132 10 6 2.7955 -1.8298 0.7467 11 7 2.0379 -0.7311 1.1640 12 6 1.8044 -0.3966 2.4486 13 8 1.1317 0.5785 2.7087 14 6 2.3793 -1.2343 3.5616 15 7 1.9856 -0.6664 4.8534 16 6 0.7438 -1.1020 5.4973 17 6 2.7782 0.2717 5.4591 18 1 3.4627 0.8628 4.8687 19 6 2.7021 0.4629 6.8319 20 7 2.0702 -0.4129 7.5843 21 14 3.4963 1.9632 7.6114 22 1 2.5156 3.0777 7.6520 23 1 3.9279 1.6330 8.9934 24 1 4.6768 2.3719 6.8084 25 1 -0.3632 0.4806 0.9084 26 1 -0.3633 0.5465 -0.8704 27 1 -0.3634 -1.0268 -0.0380 28 1 2.7141 -0.1247 -1.8207 29 1 1.2402 -1.1399 -1.8253 30 1 3.6001 -2.9906 -2.3233 31 1 4.7596 -4.6804 -0.9581 32 1 4.6643 -4.5498 1.4992 33 1 3.4172 -2.7400 2.5913 34 1 2.0009 -2.2534 3.4820 35 1 3.4665 -1.2433 3.4853 36 1 0.9636 -1.8970 6.2099 37 1 0.2910 -0.2600 6.0206 38 1 0.0530 -1.4733 4.7404 39 1 2.0173 -0.2795 8.5436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170778447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = 14.886365 kcal Electronic energy + Delta-G solvation = -21443.912779 eV Core-core repulsion = 18351.970099 eV Total energy + Delta-G solvation = -3091.942680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21951 -39.76363 -37.73512 -36.85942 -34.31418 -33.16516 -31.82796 -30.52291 -29.17172 -27.97314 -27.37545 -24.76029 -23.25328 -22.85745 -21.95044 -20.64410 -18.92434 -18.21328 -17.56392 -17.11220 -16.86094 -16.40203 -15.78064 -15.64989 -15.37384 -15.06612 -14.96911 -14.44454 -14.05562 -13.97057 -13.63358 -13.50546 -13.30009 -13.16599 -12.89191 -12.77405 -12.64967 -12.52390 -12.39849 -12.12482 -12.07043 -11.95533 -11.62654 -11.19918 -11.10477 -10.66139 -9.66753 -8.91792 -8.70787 -7.91839 -5.41769 0.36795 0.49669 1.40340 1.44289 1.52202 1.70169 1.80298 2.45058 2.92354 3.20056 3.39645 3.53993 3.57327 3.83599 3.98490 4.12856 4.24658 4.32055 4.34002 4.44449 4.45274 4.58273 4.60548 4.68252 4.71975 4.78633 4.95935 5.02062 5.14990 5.19713 5.21355 5.32833 5.50787 5.58068 5.58392 5.62157 5.70917 6.10628 6.19615 6.48865 7.01932 7.10723 7.70302 8.14061 9.11998 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.022580 B = 0.005254 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.738311 B = 5327.494384 C = 5905.566609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.118 3.882 3 H 0.074 0.926 4 C -0.069 4.069 5 C -0.146 4.146 6 C -0.074 4.074 7 C -0.142 4.142 8 C -0.090 4.090 9 C -0.181 4.181 10 C 0.122 3.878 11 N -0.559 5.559 12 C 0.488 3.512 13 O -0.547 6.547 14 C 0.138 3.862 15 N -0.594 5.594 16 C 0.181 3.819 17 C -0.267 4.267 18 H 0.058 0.942 19 C -0.043 4.043 20 N -0.931 5.931 21 Si 0.970 3.030 22 H -0.290 1.290 23 H -0.283 1.283 24 H -0.269 1.269 25 H 0.035 0.965 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.024 0.976 37 H 0.011 0.989 38 H 0.018 0.982 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -7.770 -21.481 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.016 3.984 3 H 0.092 0.908 4 C -0.106 4.106 5 C -0.149 4.149 6 C -0.092 4.092 7 C -0.161 4.161 8 C -0.108 4.108 9 C -0.201 4.201 10 C 0.027 3.973 11 N -0.284 5.284 12 C 0.277 3.723 13 O -0.423 6.423 14 C 0.007 3.993 15 N -0.315 5.315 16 C 0.036 3.964 17 C -0.397 4.397 18 H 0.075 0.925 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.798 3.202 22 H -0.218 1.218 23 H -0.209 1.209 24 H -0.194 1.194 25 H 0.055 0.945 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.173 0.827 31 H 0.174 0.826 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.042 0.958 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.429 -7.121 -20.975 22.283 hybrid contribution -0.008 1.153 1.163 1.637 sum 2.421 -5.968 -19.812 20.833 Atomic orbital electron populations 1.22067 0.93574 1.02508 1.02902 1.21840 0.95711 0.96429 0.84462 0.90783 1.21202 1.00014 0.93918 0.95448 1.20329 1.03167 0.99683 0.91691 1.20751 0.95017 0.92109 1.01298 1.21401 1.01159 1.00265 0.93289 1.21190 0.97039 0.96730 0.95882 1.21315 1.01827 0.96265 1.00741 1.18730 0.94695 0.89088 0.94825 1.46551 1.48960 1.26685 1.06164 1.23231 0.79718 0.86073 0.83306 1.90615 1.39361 1.28969 1.83380 1.21235 0.99474 0.95108 0.83491 1.43808 1.22478 1.47254 1.17945 1.20560 0.85250 0.97283 0.93314 1.19316 1.18063 1.12130 0.90198 0.92454 1.25732 1.00815 1.00953 0.96417 1.70197 1.47542 1.35465 1.04464 0.85232 0.78185 0.79094 0.77693 1.21763 1.20886 1.19404 0.94550 0.88180 0.92183 0.87284 0.86905 0.82696 0.82627 0.83561 0.85655 0.88733 0.89110 0.95781 0.96964 0.96385 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.07 71.98 0.65 -3.32 16 2 C 0.12 3.21 3.64 45.24 0.16 3.37 16 3 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.07 -1.26 6.59 30.26 0.20 -1.06 16 5 C -0.15 -3.19 6.23 -19.63 -0.12 -3.32 16 6 C -0.07 -1.21 10.04 22.25 0.22 -0.98 16 7 C -0.14 -2.28 10.06 22.28 0.22 -2.06 16 8 C -0.09 -1.83 10.02 22.19 0.22 -1.60 16 9 C -0.18 -4.90 8.88 22.51 0.20 -4.70 16 10 C 0.12 3.52 6.59 38.28 0.25 3.77 16 11 N -0.56 -19.07 2.89 -607.17 -1.75 -20.83 16 12 C 0.49 21.20 7.66 87.66 0.67 21.87 16 13 O -0.55 -28.32 15.34 -3.06 -0.05 -28.37 16 14 C 0.14 6.03 3.95 85.63 0.34 6.37 16 15 N -0.59 -32.40 2.41 -731.30 -1.76 -34.16 16 16 C 0.18 9.75 8.98 127.77 1.15 10.89 16 17 C -0.27 -15.82 9.65 84.03 0.81 -15.00 16 18 H 0.06 3.40 7.86 -2.91 -0.02 3.38 16 19 C -0.04 -2.55 5.10 84.86 0.43 -2.12 16 20 N -0.93 -56.53 10.71 21.65 0.23 -56.30 16 21 Si 0.97 47.39 29.57 68.60 2.03 49.42 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 H 0.04 1.23 6.77 -2.39 -0.02 1.22 16 26 H 0.10 1.86 8.14 -2.38 -0.02 1.85 16 27 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.11 1.53 7.70 -2.39 -0.02 1.52 16 30 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 31 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 32 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.13 3.71 4.21 -2.91 -0.01 3.70 16 34 H 0.10 3.69 6.84 -2.38 -0.02 3.67 16 35 H 0.09 3.83 6.81 -2.39 -0.02 3.81 16 36 H 0.02 1.34 7.34 -2.39 -0.02 1.32 16 37 H 0.01 0.69 7.34 -2.39 -0.02 0.67 16 38 H 0.02 0.86 8.03 -2.38 -0.02 0.84 16 39 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -75.19 316.66 5.16 -70.03 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.05 Total: 8.10 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 5.42 Total: 12.10 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -3.28 Total: -111.28 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -75.19 5.16 -70.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170778447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.918 kcal (2) G-P(sol) polarization free energy of solvation -75.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds