Wall clock time and date at job start Mon Mar 30 2020 01:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21697 * 119.99433 * 0.02562 * 14 13 3 16 16 C 1.46423 * 120.00546 * 180.02562 * 14 13 3 17 17 C 1.34804 * 120.00109 * 179.97438 * 16 14 13 18 18 C 1.47205 * 120.00205 * 180.02562 * 17 16 14 19 19 C 1.39844 * 120.58374 * 0.02562 * 18 17 16 20 20 N 1.31626 * 120.52345 * 179.97438 * 19 18 17 21 21 C 1.31970 * 121.90874 * 0.02562 * 20 19 18 22 22 C 1.38352 * 121.13827 * 359.97438 * 21 20 19 23 23 C 1.50704 * 120.33174 * 180.02562 * 22 21 20 24 24 C 1.38330 * 119.33548 * 359.78904 * 22 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.08003 * 119.99962 * 0.02562 * 16 14 13 33 33 H 1.08001 * 120.00062 * 359.97438 * 17 16 14 34 34 H 1.07996 * 119.73829 * 359.95205 * 19 18 17 35 35 H 1.08000 * 119.43437 * 179.97438 * 21 20 19 36 36 H 1.08992 * 109.47062 * 89.99990 * 23 22 21 37 37 H 1.09005 * 109.46774 * 209.99991 * 23 22 21 38 38 H 1.08996 * 109.46642 * 329.99881 * 23 22 21 39 39 H 1.08002 * 120.86855 * 180.25645 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3422 2.6318 0.4311 16 6 0.0479 3.3196 2.6178 17 6 -1.1695 3.8871 2.7327 18 6 -1.5586 4.5462 3.9901 19 6 -0.6748 4.5913 5.0730 20 7 -1.0238 5.1815 6.1966 21 6 -2.2059 5.7480 6.3491 22 6 -3.1372 5.7466 5.3259 23 6 -4.4816 6.3995 5.5196 24 6 -2.8201 5.1443 4.1217 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 0.7379 3.3489 3.4481 33 1 -1.8591 3.8588 1.9020 34 1 0.3017 4.1381 4.9867 35 1 -2.4506 6.2208 7.2887 36 1 -4.4244 7.4453 5.2181 37 1 -5.2259 5.8859 4.9109 38 1 -4.7667 6.3392 6.5699 39 1 -3.5268 5.1324 3.3050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183832755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:29 Heat of formation + Delta-G solvation = -1.925705 kcal Electronic energy + Delta-G solvation = -19977.075883 eV Core-core repulsion = 16884.404177 eV Total energy + Delta-G solvation = -3092.671706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41456 -39.00281 -35.34680 -34.39258 -33.85265 -32.38012 -31.11795 -30.04576 -27.55216 -27.06469 -24.51447 -23.29849 -22.89047 -21.09333 -19.48774 -19.14956 -17.66197 -17.17696 -16.29517 -15.93846 -15.20289 -14.66251 -14.60268 -14.40391 -14.28086 -13.77347 -13.32277 -13.22912 -13.10319 -12.81229 -12.66956 -12.13939 -11.96183 -11.76216 -11.53540 -11.24731 -10.99275 -10.86269 -10.75751 -10.32369 -10.17679 -9.65728 -9.64149 -9.51921 -9.12197 -9.03333 -8.50640 -8.46010 -7.80470 -6.12824 -4.22214 0.37750 1.00657 2.03259 3.24211 3.31298 3.33416 3.60446 3.99787 4.01261 4.21949 4.36198 4.49036 4.62393 4.69094 4.75653 4.94846 5.12581 5.18823 5.23153 5.39235 5.44869 5.58600 5.71581 5.82796 5.95155 6.36149 6.39252 6.40026 6.46294 6.51509 6.66479 7.04632 7.20189 7.36377 7.44279 7.62000 7.73615 7.74426 7.89962 8.17691 8.66035 8.77135 9.12021 9.45172 10.92563 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.033602 B = 0.003201 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.083690 B = 8746.475730 C = 9272.744420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.527 3.473 15 O -0.551 6.551 16 C -0.176 4.176 17 C -0.053 4.053 18 C -0.103 4.103 19 C 0.104 3.896 20 N -0.480 5.480 21 C 0.094 3.906 22 C -0.139 4.139 23 C -0.110 4.110 24 C -0.063 4.063 25 H 0.022 0.978 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.584 8.877 14.444 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.346 5.346 14 C 0.314 3.686 15 O -0.432 6.432 16 C -0.196 4.196 17 C -0.074 4.074 18 C -0.105 4.105 19 C -0.054 4.054 20 N -0.187 5.187 21 C -0.062 4.062 22 C -0.141 4.141 23 C -0.167 4.167 24 C -0.089 4.089 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.222 0.778 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.475 8.750 14.260 20.288 hybrid contribution 0.781 -0.101 -0.440 0.902 sum -10.694 8.648 13.820 19.497 Atomic orbital electron populations 1.21843 0.98353 0.98028 1.01242 1.21935 0.92621 0.99751 1.02311 1.18812 0.94246 0.89227 0.80995 0.93207 1.21238 0.90698 1.39038 1.06325 0.92054 1.24890 0.98628 0.94807 0.95370 1.69896 1.35132 1.37604 1.09336 0.86453 0.84856 0.78455 0.77377 1.20542 1.21079 1.19849 1.46443 1.14415 1.55181 1.18567 1.18161 0.83090 0.79802 0.87546 1.90781 1.51532 1.60452 1.40441 1.23324 0.97547 1.00295 0.98476 1.22110 0.96672 0.93861 0.94749 1.20115 0.95164 0.99715 0.95507 1.23151 0.99368 0.95186 0.87712 1.67628 1.18203 1.08366 1.24536 1.22748 0.88813 0.96143 0.98532 1.20878 0.98232 1.00201 0.94791 1.20729 0.92592 1.00490 1.02889 1.21724 0.95560 0.94496 0.97109 0.95868 0.93149 0.94268 0.95011 0.88271 0.92556 0.77816 0.85809 0.84443 0.82225 0.82890 0.90814 0.91179 0.91125 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.64 11.29 55.43 0.63 -24.01 16 9 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.70 -14.31 5.02 -56.33 -0.28 -14.59 16 14 C 0.53 10.27 6.31 -12.97 -0.08 10.19 16 15 O -0.55 -12.61 13.36 5.19 0.07 -12.54 16 16 C -0.18 -2.54 9.42 -37.51 -0.35 -2.90 16 17 C -0.05 -0.71 9.48 -37.16 -0.35 -1.06 16 18 C -0.10 -1.20 5.88 -104.91 -0.62 -1.82 16 19 C 0.10 1.21 10.59 -17.04 -0.18 1.03 16 20 N -0.48 -5.76 10.34 -12.83 -0.13 -5.89 16 21 C 0.09 0.92 10.85 -17.45 -0.19 0.73 16 22 C -0.14 -1.23 5.89 -104.54 -0.62 -1.84 16 23 C -0.11 -0.62 10.03 36.01 0.36 -0.26 16 24 C -0.06 -0.63 9.62 -38.80 -0.37 -1.00 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 27 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 6.86 8.52 -40.82 -0.35 6.51 16 32 H 0.12 1.42 6.10 -52.48 -0.32 1.10 16 33 H 0.14 1.90 7.52 -52.49 -0.39 1.51 16 34 H 0.16 1.62 6.19 -52.49 -0.32 1.29 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -31.03 327.29 -7.88 -38.91 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.29 Total: 6.68 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.78 Total: -9.01 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.21 Total: -44.49 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.03 -7.88 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183832755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.980 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds