Wall clock time and date at job start Mon Mar 30 2020 01:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 N 1.46887 * 109.47505 * 179.97438 * 3 2 1 5 5 C 1.48054 * 110.99963 * 69.87264 * 4 3 2 6 6 C 1.51201 * 105.74524 * 268.27550 * 5 4 3 7 7 C 1.38298 * 131.72484 * 162.45275 * 6 5 4 8 8 C 1.38305 * 120.20580 * 179.97438 * 7 6 5 9 9 C 1.38082 * 120.09853 * 0.02562 * 8 7 6 10 10 C 1.39021 * 119.90410 * 0.02562 * 9 8 7 11 11 N 1.39531 * 120.06766 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00146 * 325.29495 * 11 10 9 13 13 O 1.21735 * 119.99959 * 4.48059 * 12 11 10 14 14 C 1.46166 * 119.99814 * 184.48346 * 12 11 10 15 15 H 1.08001 * 120.00513 * 5.03221 * 14 12 11 16 16 C 1.40125 * 119.99842 * 185.04174 * 14 12 11 17 17 N 1.30638 * 119.99898 * 354.94891 * 16 14 12 18 18 Si 1.86801 * 119.99936 * 174.95560 * 16 14 12 19 19 H 1.48501 * 109.47262 * 94.99891 * 18 16 14 20 20 H 1.48503 * 109.46907 * 214.99424 * 18 16 14 21 21 H 1.48498 * 109.47227 * 334.99471 * 18 16 14 22 22 C 1.38264 * 108.25880 * 342.45610 * 6 5 4 23 23 C 1.48261 * 111.02516 * 315.01068 * 4 3 2 24 24 H 1.09006 * 109.46757 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47252 * 300.00220 * 1 2 3 26 26 H 1.09003 * 109.46749 * 60.00547 * 1 2 3 27 27 H 1.08998 * 109.47252 * 239.99780 * 2 1 3 28 28 H 1.09004 * 109.46904 * 119.99985 * 2 1 3 29 29 H 1.09000 * 109.46790 * 59.99491 * 3 2 1 30 30 H 1.09003 * 109.46829 * 300.00176 * 3 2 1 31 31 H 1.09005 * 110.20922 * 149.18575 * 5 4 3 32 32 H 1.09000 * 110.20928 * 27.36745 * 5 4 3 33 33 H 1.07996 * 119.89601 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.94820 * 180.02562 * 8 7 6 35 35 H 1.07996 * 120.04690 * 180.02562 * 9 8 7 36 36 H 0.97002 * 119.99696 * 145.29301 * 11 10 9 37 37 H 0.96998 * 119.99834 * 179.97438 * 17 16 14 38 38 H 1.08997 * 110.19446 * 332.67409 * 23 4 3 39 39 H 1.09005 * 110.27805 * 210.81493 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0400 0.9668 -1.2969 6 6 4.2280 -0.5253 -1.1410 7 6 4.3844 -1.5357 -2.0723 8 6 4.5422 -2.8457 -1.6579 9 6 4.5436 -3.1506 -0.3112 10 6 4.3856 -2.1386 0.6287 11 7 4.3860 -2.4429 1.9905 12 6 3.8536 -3.6034 2.4218 13 8 3.4463 -4.4221 1.6181 14 6 3.7651 -3.8790 3.8545 15 1 4.0506 -3.1211 4.5689 16 6 3.3100 -5.1268 4.3011 17 7 2.8719 -6.0080 3.4420 18 14 3.3297 -5.5300 6.1250 19 1 1.9990 -5.2310 6.7125 20 1 3.6401 -6.9704 6.3101 21 1 4.3656 -4.7094 6.8022 22 6 4.2284 -0.8232 0.2092 23 6 4.0405 0.4640 0.9794 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 4.9952 1.4462 -1.5113 32 1 3.3272 1.1752 -2.0947 33 1 4.3842 -1.3008 -3.1264 34 1 4.6644 -3.6314 -2.3888 35 1 4.6673 -4.1738 0.0115 36 1 4.7696 -1.8191 2.6267 37 1 2.5572 -6.8719 3.7511 38 1 3.3268 0.3171 1.7900 39 1 4.9955 0.8079 1.3767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184970927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:39 Heat of formation + Delta-G solvation = -2.669798 kcal Electronic energy + Delta-G solvation = -21493.362412 eV Core-core repulsion = 18400.658439 eV Total energy + Delta-G solvation = -3092.703972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62506 -38.12118 -36.33110 -33.58629 -33.13853 -32.50360 -29.99671 -29.63571 -27.30414 -26.21509 -25.86326 -22.86716 -21.57254 -20.93463 -20.38103 -19.35941 -17.58931 -16.17009 -15.97790 -15.79668 -15.44674 -14.88797 -14.38880 -14.14641 -13.78733 -13.74990 -13.02630 -12.93678 -12.63308 -12.42920 -12.18973 -12.01120 -11.79956 -11.55062 -11.44740 -11.35503 -11.14837 -10.99409 -10.82156 -10.72726 -10.61639 -10.38371 -10.35869 -9.27987 -8.90870 -8.55811 -8.08338 -7.71567 -7.10263 -6.38238 -4.84792 1.85634 1.99236 3.04376 3.12272 3.15944 3.96366 4.10079 4.19091 4.47616 4.61559 4.73008 5.02209 5.06493 5.12722 5.45941 5.50357 5.54604 5.55707 5.61207 5.70081 5.80293 5.82461 5.85303 5.92276 6.02970 6.20333 6.24380 6.29469 6.38122 6.51024 6.54988 6.70459 6.94433 7.04376 7.11217 7.14472 7.25421 7.40989 7.70307 8.03524 8.15437 8.82299 9.18844 10.35219 10.53373 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.005406 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.923080 B = 5178.054500 C = 5669.698407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.162 4.162 3 C 0.044 3.956 4 N -0.503 5.503 5 C 0.080 3.920 6 C -0.110 4.110 7 C -0.146 4.146 8 C -0.102 4.102 9 C -0.128 4.128 10 C 0.213 3.787 11 N -0.699 5.699 12 C 0.544 3.456 13 O -0.560 6.560 14 C -0.539 4.539 15 H 0.072 0.928 16 C 0.087 3.913 17 N -0.759 5.759 18 Si 0.911 3.089 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.178 4.178 23 C 0.086 3.914 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.145 0.855 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.078 0.922 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 11.705 -6.127 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C -0.084 4.084 4 N -0.223 5.223 5 C -0.048 4.048 6 C -0.112 4.112 7 C -0.166 4.166 8 C -0.121 4.121 9 C -0.149 4.149 10 C 0.114 3.886 11 N -0.342 5.342 12 C 0.351 3.649 13 O -0.442 6.442 14 C -0.575 4.575 15 H 0.090 0.910 16 C -0.134 4.134 17 N -0.387 5.387 18 Si 0.735 3.265 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.183 4.183 23 C -0.042 4.042 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.163 0.837 36 H 0.225 0.775 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.451 11.472 -6.491 13.189 hybrid contribution -0.176 -0.900 0.982 1.343 sum 0.275 10.572 -5.510 11.925 Atomic orbital electron populations 1.21690 0.95973 1.01776 1.01011 1.22344 0.96164 0.97824 1.03738 1.22494 0.87367 0.96196 1.02367 1.65425 1.08200 1.44345 1.04288 1.21676 1.00816 0.89771 0.92495 1.20693 1.01226 0.95569 0.93677 1.20192 1.06308 0.92092 0.97969 1.20927 0.99860 0.95627 0.95657 1.21491 1.00967 1.00651 0.91768 1.17397 0.94666 0.90712 0.85837 1.44110 1.62381 1.23990 1.03720 1.18373 0.77459 0.78798 0.90289 1.90613 1.51657 1.45613 1.56302 1.20846 1.46475 1.00237 0.89928 0.91014 1.25735 0.92678 0.95623 0.99355 1.69987 1.28277 1.05273 1.35184 0.86289 0.79278 0.78344 0.82549 1.19664 1.20213 1.18673 1.20695 1.08041 0.94196 0.95374 1.21554 1.00664 0.86922 0.95061 0.92690 0.92968 0.93255 0.91290 0.90867 0.90615 0.91013 0.89176 0.90819 0.87259 0.86491 0.83724 0.77478 0.91745 0.90396 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.57 16 2 C -0.16 -2.41 4.45 -26.73 -0.12 -2.53 16 3 C 0.04 0.56 5.36 -3.83 -0.02 0.54 16 4 N -0.50 -6.78 5.80 -234.73 -1.36 -8.14 16 5 C 0.08 1.05 6.41 -4.09 -0.03 1.02 16 6 C -0.11 -1.72 4.46 -104.34 -0.47 -2.19 16 7 C -0.15 -2.29 10.04 -39.53 -0.40 -2.69 16 8 C -0.10 -1.79 10.04 -39.61 -0.40 -2.19 16 9 C -0.13 -2.72 8.69 -39.35 -0.34 -3.06 16 10 C 0.21 4.42 6.30 -83.80 -0.53 3.89 16 11 N -0.70 -15.47 5.29 -11.22 -0.06 -15.53 16 12 C 0.54 14.81 7.58 -13.08 -0.10 14.72 16 13 O -0.56 -17.13 12.44 5.16 0.06 -17.06 16 14 C -0.54 -14.52 9.53 -35.69 -0.34 -14.86 16 15 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 16 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 17 N -0.76 -21.82 11.84 55.55 0.66 -21.17 16 18 Si 0.91 19.34 29.56 -169.99 -5.03 14.31 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 C -0.18 -3.09 4.35 -104.11 -0.45 -3.54 16 23 C 0.09 1.28 6.14 -3.99 -0.02 1.25 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.14 6.08 -51.93 -0.32 0.82 16 28 H 0.07 1.30 5.76 -51.93 -0.30 1.00 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.81 7.83 -51.93 -0.41 0.40 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.86 7.60 -51.93 -0.39 0.47 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.15 3.52 6.19 -52.49 -0.33 3.20 16 36 H 0.39 7.54 8.80 -40.82 -0.36 7.19 16 37 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 38 H 0.08 1.20 6.74 -51.93 -0.35 0.85 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -31.15 315.12 -9.29 -40.44 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.38 Total: 11.37 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.94 Total: -8.98 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.76 Total: -44.83 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.06 Total: -17.06 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.15 -9.29 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184970927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.773 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds