Wall clock time and date at job start Mon Mar 30 2020 01:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 N 1.46887 * 109.47505 * 179.97438 * 3 2 1 5 5 C 1.48054 * 110.99963 * 69.87264 * 4 3 2 6 6 C 1.51201 * 105.74524 * 268.27550 * 5 4 3 7 7 C 1.38298 * 131.72484 * 162.45275 * 6 5 4 8 8 C 1.38305 * 120.20580 * 179.97438 * 7 6 5 9 9 C 1.38082 * 120.09853 * 0.02562 * 8 7 6 10 10 C 1.39021 * 119.90410 * 0.02562 * 9 8 7 11 11 N 1.39531 * 120.06766 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00146 * 325.29495 * 11 10 9 13 13 O 1.21735 * 119.99959 * 4.48059 * 12 11 10 14 14 C 1.46166 * 119.99814 * 184.48346 * 12 11 10 15 15 H 1.08001 * 120.00513 * 5.03221 * 14 12 11 16 16 C 1.40125 * 119.99842 * 185.04174 * 14 12 11 17 17 N 1.30638 * 119.99898 * 354.94891 * 16 14 12 18 18 Si 1.86801 * 119.99936 * 174.95560 * 16 14 12 19 19 H 1.48501 * 109.47262 * 94.99891 * 18 16 14 20 20 H 1.48503 * 109.46907 * 214.99424 * 18 16 14 21 21 H 1.48498 * 109.47227 * 334.99471 * 18 16 14 22 22 C 1.38264 * 108.25880 * 342.45610 * 6 5 4 23 23 C 1.48261 * 111.02516 * 315.01068 * 4 3 2 24 24 H 1.09006 * 109.46757 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47252 * 300.00220 * 1 2 3 26 26 H 1.09003 * 109.46749 * 60.00547 * 1 2 3 27 27 H 1.08998 * 109.47252 * 239.99780 * 2 1 3 28 28 H 1.09004 * 109.46904 * 119.99985 * 2 1 3 29 29 H 1.09000 * 109.46790 * 59.99491 * 3 2 1 30 30 H 1.09003 * 109.46829 * 300.00176 * 3 2 1 31 31 H 1.09005 * 110.20922 * 149.18575 * 5 4 3 32 32 H 1.09000 * 110.20928 * 27.36745 * 5 4 3 33 33 H 1.07996 * 119.89601 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.94820 * 180.02562 * 8 7 6 35 35 H 1.07996 * 120.04690 * 180.02562 * 9 8 7 36 36 H 0.97002 * 119.99696 * 145.29301 * 11 10 9 37 37 H 0.96998 * 119.99834 * 179.97438 * 17 16 14 38 38 H 1.08997 * 110.19446 * 332.67409 * 23 4 3 39 39 H 1.09005 * 110.27805 * 210.81493 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0400 0.9668 -1.2969 6 6 4.2280 -0.5253 -1.1410 7 6 4.3844 -1.5357 -2.0723 8 6 4.5422 -2.8457 -1.6579 9 6 4.5436 -3.1506 -0.3112 10 6 4.3856 -2.1386 0.6287 11 7 4.3860 -2.4429 1.9905 12 6 3.8536 -3.6034 2.4218 13 8 3.4463 -4.4221 1.6181 14 6 3.7651 -3.8790 3.8545 15 1 4.0506 -3.1211 4.5689 16 6 3.3100 -5.1268 4.3011 17 7 2.8719 -6.0080 3.4420 18 14 3.3297 -5.5300 6.1250 19 1 1.9990 -5.2310 6.7125 20 1 3.6401 -6.9704 6.3101 21 1 4.3656 -4.7094 6.8022 22 6 4.2284 -0.8232 0.2092 23 6 4.0405 0.4640 0.9794 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 4.9952 1.4462 -1.5113 32 1 3.3272 1.1752 -2.0947 33 1 4.3842 -1.3008 -3.1264 34 1 4.6644 -3.6314 -2.3888 35 1 4.6673 -4.1738 0.0115 36 1 4.7696 -1.8191 2.6267 37 1 2.5572 -6.8719 3.7511 38 1 3.3268 0.3171 1.7900 39 1 4.9955 0.8079 1.3767 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184970927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:39 Heat of formation + Delta-G solvation = -24.669478 kcal Electronic energy + Delta-G solvation = -21494.316389 eV Core-core repulsion = 18400.658439 eV Total energy + Delta-G solvation = -3093.657950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.93929 -39.85549 -37.85469 -35.37501 -34.56150 -34.33239 -31.27292 -31.15881 -28.84657 -27.83963 -27.13762 -24.20093 -23.14735 -22.32865 -21.55180 -21.00771 -19.47178 -17.80400 -17.54309 -17.14478 -16.92191 -16.22620 -16.00346 -15.64514 -15.24470 -15.10567 -14.63634 -14.42385 -14.05801 -13.82618 -13.71337 -13.25162 -13.11567 -12.95658 -12.88969 -12.76108 -12.64496 -12.51274 -12.35626 -12.08574 -12.06690 -12.01960 -11.55733 -11.06338 -10.79729 -9.90468 -9.68326 -9.36286 -8.75955 -8.39860 -6.97112 0.44031 0.53378 1.36822 1.38136 1.54588 2.18489 2.34802 2.82777 2.93604 3.02811 3.48207 3.54097 3.80552 3.97031 3.99044 4.25375 4.35649 4.37310 4.44882 4.51158 4.59203 4.73363 4.76050 4.77081 4.84966 4.92827 4.99706 5.08277 5.13671 5.17896 5.22606 5.37163 5.46527 5.48533 5.63162 5.74591 5.81961 5.92520 6.02062 6.13461 6.40507 6.75247 7.30861 8.32964 8.53952 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.005406 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.923080 B = 5178.054500 C = 5669.698407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 C 0.048 3.952 4 N -0.496 5.496 5 C 0.083 3.917 6 C -0.105 4.105 7 C -0.133 4.133 8 C -0.105 4.105 9 C -0.162 4.162 10 C 0.178 3.822 11 N -0.692 5.692 12 C 0.531 3.469 13 O -0.606 6.606 14 C -0.567 4.567 15 H 0.091 0.909 16 C 0.031 3.969 17 N -0.814 5.814 18 Si 1.000 3.000 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.247 1.247 22 C -0.174 4.174 23 C 0.089 3.911 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.404 0.596 37 H 0.277 0.723 38 H 0.068 0.932 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 14.848 -6.514 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.195 4.195 3 C -0.080 4.080 4 N -0.215 5.215 5 C -0.044 4.044 6 C -0.107 4.107 7 C -0.152 4.152 8 C -0.124 4.124 9 C -0.184 4.184 10 C 0.081 3.919 11 N -0.336 5.336 12 C 0.338 3.662 13 O -0.492 6.492 14 C -0.602 4.602 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.443 5.443 18 Si 0.818 3.182 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.170 1.170 22 C -0.178 4.178 23 C -0.039 4.039 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.117 0.883 36 H 0.238 0.762 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.461 14.678 -6.904 16.227 hybrid contribution -0.170 -1.788 0.944 2.029 sum 0.291 12.890 -5.960 14.204 Atomic orbital electron populations 1.21671 0.94787 1.00939 1.02787 1.22243 0.97273 0.99014 1.00967 1.22570 0.86801 0.94507 1.04161 1.65483 1.08676 1.43136 1.04195 1.21859 1.02640 0.87140 0.92790 1.21208 0.99184 0.97588 0.92690 1.20593 1.03730 0.90827 1.00073 1.21142 0.99379 0.97594 0.94239 1.21284 1.04156 0.98894 0.94022 1.17607 0.97224 0.92322 0.84783 1.43633 1.62124 1.22817 1.04993 1.18716 0.77311 0.79606 0.90596 1.90576 1.53659 1.47544 1.57407 1.21384 1.47016 1.01466 0.90356 0.89091 1.26997 0.91313 0.94964 1.05272 1.70151 1.29662 1.06099 1.38367 0.84974 0.79945 0.78318 0.74925 1.18636 1.19609 1.16989 1.20918 1.06445 0.93493 0.96992 1.21575 1.01267 0.86019 0.95030 0.94872 0.91916 0.90725 0.93051 0.94631 0.89680 0.88358 0.86980 0.88360 0.83232 0.84620 0.88292 0.76159 0.91255 0.91336 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.89 16 2 C -0.16 -4.46 4.45 30.60 0.14 -4.33 16 3 C 0.05 1.05 5.36 86.31 0.46 1.51 16 4 N -0.50 -11.62 5.80 -896.54 -5.20 -16.82 16 5 C 0.08 1.79 6.41 85.49 0.55 2.34 16 6 C -0.10 -3.04 4.46 -19.68 -0.09 -3.13 16 7 C -0.13 -3.87 10.04 22.30 0.22 -3.64 16 8 C -0.10 -3.74 10.04 22.25 0.22 -3.52 16 9 C -0.16 -7.41 8.69 22.42 0.19 -7.21 16 10 C 0.18 7.76 6.30 38.28 0.24 8.00 16 11 N -0.69 -32.51 5.29 -307.60 -1.63 -34.14 16 12 C 0.53 30.84 7.58 86.30 0.65 31.50 16 13 O -0.61 -40.11 12.44 -4.46 -0.06 -40.16 16 14 C -0.57 -31.71 9.53 24.79 0.24 -31.47 16 15 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 16 C 0.03 1.69 5.50 85.33 0.47 2.16 16 17 N -0.81 -49.14 11.84 21.85 0.26 -48.88 16 18 Si 1.00 40.19 29.56 68.60 2.03 42.21 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 22 C -0.17 -5.96 4.35 -19.54 -0.08 -6.05 16 23 C 0.09 2.51 6.14 85.44 0.52 3.04 16 24 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.62 6.08 -2.39 -0.01 1.61 16 28 H 0.03 1.28 5.76 -2.39 -0.01 1.26 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 1.71 7.83 -2.39 -0.02 1.69 16 31 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.10 1.73 7.60 -2.39 -0.02 1.71 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.10 5.38 6.19 -2.91 -0.02 5.36 16 36 H 0.40 16.30 8.80 -92.71 -0.82 15.48 16 37 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16 38 H 0.07 2.08 6.74 -2.39 -0.02 2.07 16 39 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -73.78 315.12 0.11 -73.66 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: 0.25 Total: 37.83 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.45 Total: -13.70 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -6.56 Total: -99.84 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.06 Total: -40.16 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -73.78 0.11 -73.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184970927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.993 kcal (2) G-P(sol) polarization free energy of solvation -73.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds