Wall clock time and date at job start Mon Mar 30 2020 02:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 113.38373 * 2 1 4 4 C 1.53513 * 114.17343 * 133.07692 * 2 1 3 5 5 N 1.47481 * 87.92854 * 87.62361 * 4 2 1 6 6 C 1.46900 * 111.00013 * 138.70575 * 5 4 2 7 7 C 1.50702 * 109.47098 * 74.02380 * 6 5 4 8 8 O 1.21296 * 120.00238 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99976 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99962 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00437 * 0.02562 * 10 9 7 12 12 C 1.38953 * 119.99933 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00118 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99896 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47695 * 59.99561 * 14 12 10 16 16 H 1.48503 * 109.47387 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47160 * 299.99568 * 14 12 10 18 18 C 1.47471 * 87.83748 * 27.01109 * 5 4 2 19 19 H 1.09005 * 113.48014 * 87.81382 * 18 5 4 20 20 C 1.50701 * 113.47708 * 218.22268 * 18 5 4 21 21 C 1.38235 * 119.99808 * 200.49604 * 20 18 5 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 18 23 23 C 1.38232 * 120.00069 * 0.09581 * 22 21 20 24 24 C 1.38234 * 119.99842 * 359.83724 * 23 22 21 25 25 C 1.38230 * 119.99865 * 20.47350 * 20 18 5 26 26 H 1.09006 * 109.47016 * 193.08437 * 1 2 3 27 27 H 1.09001 * 109.47076 * 313.07908 * 1 2 3 28 28 H 1.08995 * 109.47800 * 73.07897 * 1 2 3 29 29 H 1.09005 * 113.47629 * 332.85783 * 4 2 1 30 30 H 1.08997 * 113.47613 * 202.39187 * 4 2 1 31 31 H 1.08993 * 109.47178 * 194.02828 * 6 5 4 32 32 H 1.09003 * 109.47120 * 314.03241 * 6 5 4 33 33 H 0.96993 * 120.00103 * 0.02562 * 9 7 6 34 34 H 0.96999 * 120.00199 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.00616 * 359.70324 * 21 20 18 36 36 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.99649 * 179.97438 * 23 22 21 38 38 H 1.08008 * 119.99453 * 180.11401 * 24 23 22 39 39 H 1.08001 * 120.00350 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9626 1.0005 0.0000 4 6 2.1586 -0.9565 1.0230 5 7 2.0810 -2.0160 0.0000 6 6 3.2985 -2.8380 0.0000 7 6 3.2935 -3.7433 1.2048 8 8 2.3666 -3.7076 1.9863 9 7 4.3185 -4.5932 1.4133 10 6 4.3137 -5.4171 2.5090 11 1 3.4884 -5.3855 3.2049 12 6 5.3707 -6.2931 2.7243 13 7 6.3751 -6.3313 1.8779 14 14 5.3637 -7.4162 4.2169 15 1 4.1708 -8.2990 4.1667 16 1 6.5943 -8.2474 4.2167 17 1 5.3204 -6.5954 5.4538 18 6 2.1585 -0.9566 -1.0229 19 1 3.1797 -0.6911 -1.2967 20 6 1.2821 -1.2141 -2.2215 21 6 1.5430 -0.5741 -3.4187 22 6 0.7393 -0.8107 -4.5184 23 6 -0.3263 -1.6858 -4.4202 24 6 -0.5862 -2.3268 -3.2234 25 6 0.2177 -2.0906 -2.1239 26 1 -0.3633 -1.0010 0.2327 27 1 -0.3633 0.7019 0.7506 28 1 -0.3634 0.2991 -0.9831 29 1 1.5247 -1.1428 1.8900 30 1 3.1797 -0.6904 1.2960 31 1 3.3299 -3.4409 -0.9075 32 1 4.1743 -2.1900 0.0362 33 1 5.0595 -4.6220 0.7882 34 1 7.1128 -6.9430 2.0279 35 1 2.3719 0.1141 -3.4938 36 1 0.9429 -0.3104 -5.4536 37 1 -0.9543 -1.8703 -5.2792 38 1 -1.4177 -3.0119 -3.1472 39 1 0.0143 -2.5912 -1.1888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245432876.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:05 Heat of formation + Delta-G solvation = 25.926204 kcal Electronic energy + Delta-G solvation = -20803.006047 eV Core-core repulsion = 17711.542090 eV Total energy + Delta-G solvation = -3091.463956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80655 -38.55528 -37.63243 -33.91853 -32.04090 -31.23301 -31.02574 -30.73156 -27.72152 -25.50740 -25.03504 -23.33462 -22.17044 -21.50979 -19.24663 -18.66090 -17.88531 -16.81736 -16.05320 -15.90255 -15.35963 -14.82503 -14.63972 -14.38668 -13.87021 -13.76988 -13.69375 -13.30701 -12.87868 -12.56819 -12.31295 -12.22340 -12.11634 -11.72268 -11.53382 -11.19897 -11.07174 -10.93130 -10.84931 -10.47598 -10.42431 -10.19807 -10.18852 -9.47813 -8.81735 -8.69447 -8.58340 -8.20667 -7.94803 -6.40221 -3.81051 1.40973 1.51485 3.20870 3.26368 3.30814 3.79675 3.92447 4.08747 4.27236 4.48437 4.85627 4.96753 4.98888 5.05316 5.09551 5.21269 5.24921 5.34476 5.50069 5.52694 5.61069 5.69120 5.73994 5.82852 5.91981 5.98647 6.06271 6.11268 6.16528 6.25709 6.30576 6.46071 6.53141 6.59789 6.65310 6.83591 7.10883 7.30849 7.56131 8.07030 8.63157 9.19351 9.55895 10.07849 10.77589 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.003927 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.924918 B = 7128.991644 C = 7506.194776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 H 0.080 0.920 4 C 0.015 3.985 5 N -0.433 5.433 6 C 0.009 3.991 7 C 0.446 3.554 8 O -0.578 6.578 9 N -0.565 5.565 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.059 3.941 19 H 0.082 0.918 20 C -0.061 4.061 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.086 4.086 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.006 12.632 -10.917 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.128 4.128 3 H 0.098 0.902 4 C -0.114 4.114 5 N -0.154 5.154 6 C -0.123 4.123 7 C 0.231 3.769 8 O -0.462 6.462 9 N -0.202 5.202 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.051 4.051 19 H 0.100 0.900 20 C -0.062 4.062 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.104 4.104 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.971 11.996 -10.361 18.214 hybrid contribution 1.534 -0.259 0.187 1.567 sum -7.437 11.737 -10.174 17.222 Atomic orbital electron populations 1.21521 0.92901 1.02733 1.01163 1.22639 0.97167 0.97317 0.95694 0.90158 1.23709 1.00433 0.90338 0.96906 1.68733 1.33241 1.10704 1.02770 1.22480 0.92285 0.97727 0.99798 1.19650 0.84716 0.84562 0.87968 1.90519 1.36241 1.71278 1.48182 1.41859 1.19666 1.34133 1.24522 1.19646 1.06327 1.14798 1.02095 0.88009 1.25251 0.95270 0.98419 0.98963 1.69604 1.09480 1.38592 1.36741 0.85925 0.77510 0.79704 0.81117 1.19892 1.20977 1.19926 1.22489 0.97700 0.93329 0.91551 0.89987 1.19550 0.96179 0.96963 0.93511 1.20960 0.99875 1.00232 0.92608 1.21014 0.96005 0.99278 0.98276 1.21101 0.97976 0.97715 0.97705 1.21208 1.00003 1.00046 0.93252 1.21237 0.93607 0.96428 0.99139 0.91159 0.92835 0.92534 0.88872 0.91708 0.89270 0.92777 0.77530 0.91842 0.86530 0.86545 0.86644 0.86337 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.26 37.15 0.31 -1.19 16 2 C -0.11 -1.35 4.67 -90.09 -0.42 -1.77 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.01 0.23 6.24 -7.55 -0.05 0.18 16 5 N -0.43 -7.23 4.57 -239.35 -1.09 -8.33 16 6 C 0.01 0.17 5.31 -4.97 -0.03 0.14 16 7 C 0.45 10.70 7.62 -10.98 -0.08 10.62 16 8 O -0.58 -15.79 15.34 5.54 0.09 -15.71 16 9 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 10 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 14 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.06 0.79 3.23 -72.60 -0.23 0.55 16 19 H 0.08 1.01 7.77 -51.93 -0.40 0.61 16 20 C -0.06 -0.80 4.35 -104.63 -0.46 -1.25 16 21 C -0.12 -1.35 9.74 -39.58 -0.39 -1.74 16 22 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 23 C -0.13 -1.37 10.05 -39.59 -0.40 -1.76 16 24 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 25 C -0.09 -1.17 7.84 -39.59 -0.31 -1.48 16 26 H 0.07 0.95 6.96 -51.93 -0.36 0.59 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.65 7.26 -51.93 -0.38 0.27 16 29 H 0.09 1.61 8.11 -51.93 -0.42 1.19 16 30 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16 33 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.14 2.08 6.74 -52.49 -0.35 1.72 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -31.05 323.82 -9.08 -40.13 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.50 Total: 10.95 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.09 Total: -9.43 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.43 Total: -47.05 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.05 -9.08 -40.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245432876.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.054 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds