Wall clock time and date at job start Mon Mar 30 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 113.38373 * 2 1 4 4 C 1.53513 * 114.17343 * 133.07692 * 2 1 3 5 5 N 1.47481 * 87.92854 * 87.62361 * 4 2 1 6 6 C 1.46900 * 111.00013 * 138.70575 * 5 4 2 7 7 C 1.50702 * 109.47098 * 74.02380 * 6 5 4 8 8 O 1.21296 * 120.00238 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99976 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99962 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00437 * 0.02562 * 10 9 7 12 12 C 1.38953 * 119.99933 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00118 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99896 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47695 * 59.99561 * 14 12 10 16 16 H 1.48503 * 109.47387 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47160 * 299.99568 * 14 12 10 18 18 C 1.47471 * 87.83748 * 27.01109 * 5 4 2 19 19 H 1.09005 * 113.48014 * 87.81382 * 18 5 4 20 20 C 1.50701 * 113.47708 * 218.22268 * 18 5 4 21 21 C 1.38235 * 119.99808 * 200.49604 * 20 18 5 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 18 23 23 C 1.38232 * 120.00069 * 0.09581 * 22 21 20 24 24 C 1.38234 * 119.99842 * 359.83724 * 23 22 21 25 25 C 1.38230 * 119.99865 * 20.47350 * 20 18 5 26 26 H 1.09006 * 109.47016 * 193.08437 * 1 2 3 27 27 H 1.09001 * 109.47076 * 313.07908 * 1 2 3 28 28 H 1.08995 * 109.47800 * 73.07897 * 1 2 3 29 29 H 1.09005 * 113.47629 * 332.85783 * 4 2 1 30 30 H 1.08997 * 113.47613 * 202.39187 * 4 2 1 31 31 H 1.08993 * 109.47178 * 194.02828 * 6 5 4 32 32 H 1.09003 * 109.47120 * 314.03241 * 6 5 4 33 33 H 0.96993 * 120.00103 * 0.02562 * 9 7 6 34 34 H 0.96999 * 120.00199 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.00616 * 359.70324 * 21 20 18 36 36 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.99649 * 179.97438 * 23 22 21 38 38 H 1.08008 * 119.99453 * 180.11401 * 24 23 22 39 39 H 1.08001 * 120.00350 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9626 1.0005 0.0000 4 6 2.1586 -0.9565 1.0230 5 7 2.0810 -2.0160 0.0000 6 6 3.2985 -2.8380 0.0000 7 6 3.2935 -3.7433 1.2048 8 8 2.3666 -3.7076 1.9863 9 7 4.3185 -4.5932 1.4133 10 6 4.3137 -5.4171 2.5090 11 1 3.4884 -5.3855 3.2049 12 6 5.3707 -6.2931 2.7243 13 7 6.3751 -6.3313 1.8779 14 14 5.3637 -7.4162 4.2169 15 1 4.1708 -8.2990 4.1667 16 1 6.5943 -8.2474 4.2167 17 1 5.3204 -6.5954 5.4538 18 6 2.1585 -0.9566 -1.0229 19 1 3.1797 -0.6911 -1.2967 20 6 1.2821 -1.2141 -2.2215 21 6 1.5430 -0.5741 -3.4187 22 6 0.7393 -0.8107 -4.5184 23 6 -0.3263 -1.6858 -4.4202 24 6 -0.5862 -2.3268 -3.2234 25 6 0.2177 -2.0906 -2.1239 26 1 -0.3633 -1.0010 0.2327 27 1 -0.3633 0.7019 0.7506 28 1 -0.3634 0.2991 -0.9831 29 1 1.5247 -1.1428 1.8900 30 1 3.1797 -0.6904 1.2960 31 1 3.3299 -3.4409 -0.9075 32 1 4.1743 -2.1900 0.0362 33 1 5.0595 -4.6220 0.7882 34 1 7.1128 -6.9430 2.0279 35 1 2.3719 0.1141 -3.4938 36 1 0.9429 -0.3104 -5.4536 37 1 -0.9543 -1.8703 -5.2792 38 1 -1.4177 -3.0119 -3.1472 39 1 0.0143 -2.5912 -1.1888 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245432876.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:04 Heat of formation + Delta-G solvation = 5.959489 kcal Electronic energy + Delta-G solvation = -20803.871868 eV Core-core repulsion = 17711.542090 eV Total energy + Delta-G solvation = -3092.329778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.96367 -39.94682 -39.10190 -35.97619 -33.49118 -33.03484 -32.03887 -31.62739 -29.11377 -26.84750 -26.56209 -24.72733 -23.13451 -22.45740 -21.10308 -19.95347 -19.68164 -18.01971 -17.51826 -17.21889 -16.57858 -16.45002 -15.93109 -15.73000 -15.55031 -15.14130 -14.93008 -14.33681 -14.14518 -13.85317 -13.64843 -13.48234 -13.36091 -13.17530 -12.99070 -12.86094 -12.46070 -12.25311 -12.14197 -11.96801 -11.81608 -11.57709 -11.51849 -11.23461 -10.36600 -10.03949 -9.77033 -9.68437 -9.47110 -8.48390 -5.97542 0.52331 0.62596 1.38021 1.39760 1.50948 2.02474 2.27147 2.77797 2.99585 3.17807 3.31391 3.48788 3.84445 4.01855 4.10551 4.19176 4.24150 4.29501 4.32527 4.42235 4.45345 4.50438 4.57635 4.72977 4.82983 4.84105 4.98363 5.06296 5.12641 5.18394 5.27077 5.36566 5.39344 5.50770 5.67518 5.74356 5.81044 5.95205 6.15026 6.23669 6.58005 7.10349 7.53199 8.09134 8.68981 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.003927 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.924918 B = 7128.991644 C = 7506.194776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 H 0.111 0.889 4 C 0.007 3.993 5 N -0.457 5.457 6 C 0.023 3.977 7 C 0.443 3.557 8 O -0.617 6.617 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.078 0.922 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.269 1.269 17 H -0.271 1.271 18 C 0.065 3.935 19 H 0.100 0.900 20 C -0.075 4.075 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.138 4.138 25 C -0.106 4.106 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.395 0.605 34 H 0.278 0.722 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.483 13.924 -12.657 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.110 4.110 3 H 0.129 0.871 4 C -0.122 4.122 5 N -0.180 5.180 6 C -0.108 4.108 7 C 0.230 3.770 8 O -0.503 6.503 9 N -0.211 5.211 10 C -0.465 4.465 11 H 0.096 0.904 12 C -0.211 4.211 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.198 1.198 16 H -0.193 1.193 17 H -0.196 1.196 18 C -0.044 4.044 19 H 0.118 0.882 20 C -0.075 4.075 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.156 4.156 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.229 0.771 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.439 13.300 -12.125 19.878 hybrid contribution 1.311 -0.641 0.672 1.607 sum -7.128 12.660 -11.453 18.500 Atomic orbital electron populations 1.21463 0.92810 1.01580 1.01940 1.22608 0.97136 0.97967 0.93280 0.87132 1.23728 1.00458 0.91403 0.96565 1.68758 1.32430 1.12056 1.04727 1.22336 0.94285 0.97412 0.96814 1.20661 0.83306 0.84133 0.88894 1.90488 1.37484 1.72286 1.50029 1.41932 1.20388 1.34554 1.24273 1.19623 1.06657 1.16929 1.03253 0.90414 1.26041 0.94432 0.99102 1.01574 1.69666 1.09721 1.38959 1.37820 0.84992 0.77949 0.77791 0.77619 1.19806 1.19320 1.19599 1.22554 0.98847 0.91815 0.91210 0.88214 1.19572 0.96105 0.97670 0.94163 1.21220 1.00528 1.00090 0.91937 1.21397 0.95232 0.98681 0.99135 1.21423 0.98298 0.97048 0.97770 1.21379 1.00171 1.00607 0.93485 1.21106 0.95045 0.97570 0.98721 0.93738 0.91492 0.91764 0.91792 0.91338 0.88367 0.90370 0.77100 0.91245 0.84319 0.83724 0.84227 0.85597 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.26 71.98 0.59 -2.20 16 2 C -0.09 -2.11 4.67 -10.45 -0.05 -2.16 16 3 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 4 C 0.01 0.23 6.24 83.57 0.52 0.75 16 5 N -0.46 -15.41 4.57 -911.16 -4.16 -19.57 16 6 C 0.02 0.85 5.31 85.56 0.45 1.31 16 7 C 0.44 21.92 7.62 87.66 0.67 22.59 16 8 O -0.62 -35.27 15.34 -3.08 -0.05 -35.32 16 9 N -0.57 -30.42 5.29 -306.98 -1.62 -32.04 16 10 C -0.34 -19.49 9.68 84.04 0.81 -18.67 16 11 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 13 N -0.92 -50.49 13.05 21.66 0.28 -50.20 16 14 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 C 0.06 1.62 3.23 41.44 0.13 1.76 16 19 H 0.10 2.16 7.77 -2.38 -0.02 2.14 16 20 C -0.07 -1.83 4.35 -19.87 -0.09 -1.91 16 21 C -0.12 -2.36 9.74 22.27 0.22 -2.14 16 22 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 24 C -0.14 -3.20 10.05 22.27 0.22 -2.98 16 25 C -0.11 -2.89 7.84 22.27 0.17 -2.72 16 26 H 0.04 1.26 6.96 -2.38 -0.02 1.24 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.39 7.26 -2.39 -0.02 1.37 16 29 H 0.06 2.33 8.11 -2.38 -0.02 2.31 16 30 H 0.07 2.05 7.70 -2.39 -0.02 2.03 16 31 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.08 2.48 7.56 -2.39 -0.02 2.46 16 33 H 0.40 19.92 7.90 -92.71 -0.73 19.19 16 34 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.11 3.52 6.74 -2.91 -0.02 3.50 16 Total: -1.00 -68.78 323.82 1.38 -67.40 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.32 Total: 34.88 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 4.58 Total: -10.77 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -5.50 Total: -101.82 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.05 Total: -35.32 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -68.78 1.38 -67.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245432876.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.364 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds