Wall clock time and date at job start Mon Mar 30 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.34329 * 2 1 4 4 C 1.53750 * 110.41318 * 237.95176 * 2 1 3 5 5 C 1.51213 * 104.58574 * 241.39181 * 4 2 1 6 6 C 1.38189 * 130.96957 * 179.78160 * 5 4 2 7 7 C 1.38220 * 120.15211 * 180.02562 * 6 5 4 8 8 C 1.38298 * 119.82559 * 359.97438 * 7 6 5 9 9 C 1.37839 * 120.22348 * 359.97438 * 8 7 6 10 10 C 1.38549 * 108.56408 * 359.75840 * 5 4 2 11 11 N 1.39858 * 111.61668 * 359.97438 * 10 5 4 12 12 C 1.34781 * 124.98224 * 180.02562 * 11 10 5 13 13 O 1.21589 * 119.99629 * 354.58093 * 12 11 10 14 14 N 1.34771 * 119.99917 * 174.86038 * 12 11 10 15 15 C 1.46497 * 120.00188 * 184.83984 * 14 12 11 16 16 C 1.52992 * 109.47463 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47167 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00000 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99890 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46928 * 90.00203 * 21 19 17 23 23 H 1.48499 * 109.46926 * 209.99711 * 21 19 17 24 24 H 1.48498 * 109.46944 * 330.00288 * 21 19 17 25 25 H 1.09002 * 109.46990 * 299.34031 * 1 2 3 26 26 H 1.08998 * 109.47432 * 59.34079 * 1 2 3 27 27 H 1.08997 * 109.47217 * 179.34236 * 1 2 3 28 28 H 1.09005 * 110.61364 * 122.51202 * 4 2 1 29 29 H 1.08990 * 110.20497 * 0.06800 * 4 2 1 30 30 H 1.08005 * 119.92193 * 0.02562 * 6 5 4 31 31 H 1.08000 * 120.08982 * 179.97438 * 7 6 5 32 32 H 1.08004 * 119.88551 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.85707 * 180.02562 * 9 8 7 34 34 H 0.97004 * 120.00219 * 4.84539 * 14 12 11 35 35 H 1.08998 * 109.47260 * 300.00387 * 15 14 12 36 36 H 1.09003 * 109.46868 * 59.99612 * 15 14 12 37 37 H 1.08994 * 109.47460 * 299.99988 * 16 15 14 38 38 H 1.08996 * 109.47234 * 60.00587 * 16 15 14 39 39 H 0.97003 * 119.99970 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0662 -0.7646 -1.2213 5 6 2.8558 -1.9132 -0.6350 6 6 3.5598 -2.9337 -1.2454 7 6 4.2108 -3.8827 -0.4798 8 6 4.1565 -3.8085 0.9001 9 6 3.4563 -2.7919 1.5133 10 6 2.7957 -1.8299 0.7467 11 7 2.0388 -0.7304 1.1641 12 6 1.8063 -0.3951 2.4487 13 8 2.1855 -1.1237 3.3452 14 7 1.1487 0.7448 2.7392 15 6 0.9887 1.1631 4.1340 16 6 0.2106 2.4794 4.1858 17 6 0.0466 2.9099 5.6207 18 1 0.4567 2.3053 6.4161 19 6 -0.6271 4.0756 5.9180 20 7 -1.1268 4.8116 4.9494 21 14 -0.8298 4.6096 7.6965 22 1 0.3183 5.4653 8.0903 23 1 -2.0924 5.3777 7.8419 24 1 -0.8762 3.4104 8.5711 25 1 -0.3633 0.5036 0.8959 26 1 -0.3634 0.5240 -0.8840 27 1 -0.3633 -1.0276 -0.0118 28 1 2.7140 -0.1247 -1.8206 29 1 1.2389 -1.1401 -1.8234 30 1 3.6015 -2.9898 -2.3232 31 1 4.7604 -4.6800 -0.9579 32 1 4.6645 -4.5498 1.4993 33 1 3.4181 -2.7394 2.5914 34 1 0.7812 1.2884 2.0247 35 1 0.4418 0.3964 4.6828 36 1 1.9705 1.3028 4.5864 37 1 0.7571 3.2463 3.6370 38 1 -0.7712 2.3391 3.7337 39 1 -1.6004 5.6319 5.1585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273287149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:05 Heat of formation + Delta-G solvation = -5.523140 kcal Electronic energy + Delta-G solvation = -20673.530843 eV Core-core repulsion = 17580.703140 eV Total energy + Delta-G solvation = -3092.827702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28975 -38.82199 -36.71558 -35.04877 -32.93201 -32.46013 -31.09760 -30.14815 -28.95127 -26.61475 -24.97435 -23.12787 -22.03421 -21.46726 -20.96814 -19.94454 -17.91772 -16.77067 -16.39655 -15.94130 -15.69668 -14.98718 -14.83834 -14.61269 -14.37967 -13.89740 -13.59431 -13.34157 -13.22469 -12.94037 -12.55055 -12.41551 -12.30475 -11.95543 -11.70536 -11.31652 -11.18319 -11.06580 -10.98814 -10.65894 -10.43205 -10.21152 -9.96306 -9.61485 -9.30510 -8.82369 -8.64257 -8.42095 -7.68773 -6.12168 -4.15014 1.31375 1.40504 2.60814 3.28128 3.31002 3.34360 3.38783 3.82755 3.99127 4.32642 4.39111 4.48938 4.77042 4.95176 4.99738 5.06864 5.23019 5.25133 5.34011 5.39484 5.49984 5.58576 5.68914 5.74952 5.95320 6.02303 6.10612 6.31795 6.32758 6.42930 6.47428 6.56532 6.69514 6.85571 7.01399 7.22737 7.49715 7.57209 7.86194 8.10339 8.26076 8.74496 8.90925 9.49950 10.99481 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.036103 B = 0.003574 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.376056 B = 7832.825321 C = 8491.080006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 H 0.091 0.909 4 C -0.077 4.077 5 C -0.150 4.150 6 C -0.078 4.078 7 C -0.154 4.154 8 C -0.092 4.092 9 C -0.137 4.137 10 C 0.179 3.821 11 N -0.569 5.569 12 C 0.710 3.290 13 O -0.575 6.575 14 N -0.730 5.730 15 C 0.136 3.864 16 C 0.014 3.986 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.395 0.605 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.022 0.978 38 H 0.023 0.977 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -12.490 -15.952 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 H 0.108 0.892 4 C -0.114 4.114 5 C -0.153 4.153 6 C -0.097 4.097 7 C -0.173 4.173 8 C -0.111 4.111 9 C -0.158 4.158 10 C 0.082 3.918 11 N -0.294 5.294 12 C 0.412 3.588 13 O -0.452 6.452 14 N -0.384 5.384 15 C 0.014 3.986 16 C -0.024 4.024 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.158 0.842 34 H 0.231 0.769 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.890 -12.683 -15.124 20.906 hybrid contribution -0.390 0.747 0.622 1.047 sum 6.501 -11.937 -14.502 19.876 Atomic orbital electron populations 1.22335 0.93556 1.03400 1.03595 1.21733 0.95246 0.96688 0.84353 0.89154 1.21119 0.99268 0.94528 0.96507 1.19963 1.03624 0.99130 0.92634 1.20284 0.96627 0.93347 0.99441 1.20937 1.02466 1.00055 0.93887 1.20914 0.98091 0.97424 0.94686 1.21019 0.99162 0.94246 1.01393 1.18195 0.92730 0.88243 0.92675 1.45291 1.51526 1.27348 1.05271 1.15756 0.79643 0.82544 0.80833 1.90868 1.57531 1.52256 1.44559 1.45772 1.58277 1.23011 1.11364 1.21707 1.00641 0.98647 0.77611 1.19324 0.95082 0.89755 0.98235 1.21033 1.35849 1.07320 0.91813 0.92165 1.24994 0.95276 0.96383 0.97606 1.69953 1.36960 1.14655 1.31718 0.86497 0.77552 0.78769 0.84665 1.20537 1.21157 1.19688 0.91194 0.90262 0.91605 0.89236 0.89132 0.86071 0.85995 0.85762 0.84155 0.76911 0.92359 0.92541 0.95951 0.95911 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 8.95 37.16 0.33 -1.43 16 2 C 0.12 1.38 3.20 -67.52 -0.22 1.17 16 3 H 0.09 0.94 8.12 -51.93 -0.42 0.51 16 4 C -0.08 -0.71 6.59 -27.24 -0.18 -0.89 16 5 C -0.15 -1.77 6.23 -104.27 -0.65 -2.42 16 6 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 7 C -0.15 -1.56 10.06 -39.57 -0.40 -1.96 16 8 C -0.09 -1.08 10.02 -39.71 -0.40 -1.48 16 9 C -0.14 -2.04 9.46 -39.21 -0.37 -2.41 16 10 C 0.18 2.65 6.62 -83.56 -0.55 2.10 16 11 N -0.57 -8.71 2.89 -111.14 -0.32 -9.03 16 12 C 0.71 13.29 8.16 -86.92 -0.71 12.58 16 13 O -0.57 -12.57 14.54 5.29 0.08 -12.50 16 14 N -0.73 -13.33 5.11 -65.23 -0.33 -13.66 16 15 C 0.14 2.93 5.62 -4.05 -0.02 2.91 16 16 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 17 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 18 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 21 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H 0.07 0.84 5.97 -51.93 -0.31 0.53 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.68 7.70 -51.93 -0.40 0.28 16 30 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.14 2.37 6.30 -52.49 -0.33 2.04 16 34 H 0.40 6.33 5.70 -40.82 -0.23 6.10 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -32.05 322.28 -9.58 -41.63 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.46 Total: 3.56 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -4.11 Total: -5.97 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.08 Total: -47.85 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.05 -9.58 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273287149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.112 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds