Wall clock time and date at job start Mon Mar 30 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.34329 * 2 1 4 4 C 1.53750 * 110.41318 * 237.95176 * 2 1 3 5 5 C 1.51213 * 104.58574 * 241.39181 * 4 2 1 6 6 C 1.38189 * 130.96957 * 179.78160 * 5 4 2 7 7 C 1.38220 * 120.15211 * 180.02562 * 6 5 4 8 8 C 1.38298 * 119.82559 * 359.97438 * 7 6 5 9 9 C 1.37839 * 120.22348 * 359.97438 * 8 7 6 10 10 C 1.38549 * 108.56408 * 359.75840 * 5 4 2 11 11 N 1.39858 * 111.61668 * 359.97438 * 10 5 4 12 12 C 1.34781 * 124.98224 * 180.02562 * 11 10 5 13 13 O 1.21589 * 119.99629 * 354.58093 * 12 11 10 14 14 N 1.34771 * 119.99917 * 174.86038 * 12 11 10 15 15 C 1.46497 * 120.00188 * 184.83984 * 14 12 11 16 16 C 1.52992 * 109.47463 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47167 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00000 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99843 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99890 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46928 * 90.00203 * 21 19 17 23 23 H 1.48499 * 109.46926 * 209.99711 * 21 19 17 24 24 H 1.48498 * 109.46944 * 330.00288 * 21 19 17 25 25 H 1.09002 * 109.46990 * 299.34031 * 1 2 3 26 26 H 1.08998 * 109.47432 * 59.34079 * 1 2 3 27 27 H 1.08997 * 109.47217 * 179.34236 * 1 2 3 28 28 H 1.09005 * 110.61364 * 122.51202 * 4 2 1 29 29 H 1.08990 * 110.20497 * 0.06800 * 4 2 1 30 30 H 1.08005 * 119.92193 * 0.02562 * 6 5 4 31 31 H 1.08000 * 120.08982 * 179.97438 * 7 6 5 32 32 H 1.08004 * 119.88551 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.85707 * 180.02562 * 9 8 7 34 34 H 0.97004 * 120.00219 * 4.84539 * 14 12 11 35 35 H 1.08998 * 109.47260 * 300.00387 * 15 14 12 36 36 H 1.09003 * 109.46868 * 59.99612 * 15 14 12 37 37 H 1.08994 * 109.47460 * 299.99988 * 16 15 14 38 38 H 1.08996 * 109.47234 * 60.00587 * 16 15 14 39 39 H 0.97003 * 119.99970 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0662 -0.7646 -1.2213 5 6 2.8558 -1.9132 -0.6350 6 6 3.5598 -2.9337 -1.2454 7 6 4.2108 -3.8827 -0.4798 8 6 4.1565 -3.8085 0.9001 9 6 3.4563 -2.7919 1.5133 10 6 2.7957 -1.8299 0.7467 11 7 2.0388 -0.7304 1.1641 12 6 1.8063 -0.3951 2.4487 13 8 2.1855 -1.1237 3.3452 14 7 1.1487 0.7448 2.7392 15 6 0.9887 1.1631 4.1340 16 6 0.2106 2.4794 4.1858 17 6 0.0466 2.9099 5.6207 18 1 0.4567 2.3053 6.4161 19 6 -0.6271 4.0756 5.9180 20 7 -1.1268 4.8116 4.9494 21 14 -0.8298 4.6096 7.6965 22 1 0.3183 5.4653 8.0903 23 1 -2.0924 5.3777 7.8419 24 1 -0.8762 3.4104 8.5711 25 1 -0.3633 0.5036 0.8959 26 1 -0.3634 0.5240 -0.8840 27 1 -0.3633 -1.0276 -0.0118 28 1 2.7140 -0.1247 -1.8206 29 1 1.2389 -1.1401 -1.8234 30 1 3.6015 -2.9898 -2.3232 31 1 4.7604 -4.6800 -0.9579 32 1 4.6645 -4.5498 1.4993 33 1 3.4181 -2.7394 2.5914 34 1 0.7812 1.2884 2.0247 35 1 0.4418 0.3964 4.6828 36 1 1.9705 1.3028 4.5864 37 1 0.7571 3.2463 3.6370 38 1 -0.7712 2.3391 3.7337 39 1 -1.6004 5.6319 5.1585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273287149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:05 Heat of formation + Delta-G solvation = -24.314425 kcal Electronic energy + Delta-G solvation = -20674.345694 eV Core-core repulsion = 17580.703140 eV Total energy + Delta-G solvation = -3093.642554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.39429 -40.09556 -37.73433 -36.77098 -34.89632 -33.50093 -32.23525 -31.47844 -30.31224 -27.43443 -26.84427 -24.43986 -22.96070 -22.89682 -22.27039 -21.26716 -19.14734 -18.54824 -17.77484 -17.21244 -16.68893 -16.51009 -16.25576 -15.97312 -15.74693 -15.18387 -14.89615 -14.67596 -14.28924 -14.16538 -13.75549 -13.45577 -13.36697 -13.21763 -12.99836 -12.81611 -12.58782 -12.53882 -12.29820 -12.10542 -11.95468 -11.69048 -11.50586 -11.25226 -11.19763 -10.62927 -10.19704 -9.70479 -8.73170 -8.26137 -6.36625 0.38351 0.46303 1.35605 1.41513 1.42322 1.53599 1.93654 2.38607 2.76602 2.89175 3.08739 3.47119 3.58051 3.93685 4.11305 4.14344 4.26287 4.32254 4.36940 4.43025 4.53256 4.58098 4.71177 4.74617 4.78058 4.94312 4.97486 5.12149 5.16702 5.20643 5.28011 5.43328 5.52983 5.53095 5.54933 5.66040 5.75275 5.95882 6.12805 6.15357 6.73764 6.76969 7.30885 7.32758 8.85824 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.036103 B = 0.003574 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.376056 B = 7832.825321 C = 8491.080006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.112 3.888 3 H 0.099 0.901 4 C -0.068 4.068 5 C -0.144 4.144 6 C -0.075 4.075 7 C -0.143 4.143 8 C -0.099 4.099 9 C -0.168 4.168 10 C 0.133 3.867 11 N -0.569 5.569 12 C 0.706 3.294 13 O -0.617 6.617 14 N -0.724 5.724 15 C 0.157 3.843 16 C 0.026 3.974 17 C -0.548 4.548 18 H 0.059 0.941 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.966 3.034 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.046 0.954 26 H 0.112 0.888 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.407 0.593 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.280 -13.018 -18.446 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 H 0.117 0.883 4 C -0.105 4.105 5 C -0.147 4.147 6 C -0.093 4.093 7 C -0.162 4.162 8 C -0.117 4.117 9 C -0.189 4.189 10 C 0.038 3.962 11 N -0.294 5.294 12 C 0.408 3.592 13 O -0.498 6.498 14 N -0.379 5.379 15 C 0.033 3.967 16 C -0.011 4.011 17 C -0.586 4.586 18 H 0.077 0.923 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.192 1.192 25 H 0.065 0.935 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.178 0.822 31 H 0.175 0.825 32 H 0.159 0.841 33 H 0.123 0.877 34 H 0.245 0.755 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.368 -13.223 -17.685 23.279 hybrid contribution -0.480 0.816 1.288 1.599 sum 6.888 -12.406 -16.397 21.685 Atomic orbital electron populations 1.22324 0.92956 1.03127 1.03991 1.22120 0.95814 0.97181 0.83873 0.88322 1.21219 1.00095 0.93630 0.95536 1.20360 1.03239 1.00004 0.91146 1.20777 0.95041 0.92072 1.01403 1.21397 1.01345 1.00493 0.92932 1.21157 0.97652 0.96810 0.96114 1.20993 1.01509 0.96395 1.00026 1.18580 0.94418 0.88810 0.94426 1.45284 1.51425 1.27987 1.04726 1.15878 0.79307 0.82039 0.81960 1.90834 1.59088 1.53390 1.46443 1.45451 1.58742 1.23409 1.10326 1.21201 0.99281 0.96790 0.79419 1.19109 0.94487 0.90657 0.96860 1.21431 1.36260 1.07872 0.93079 0.92323 1.25855 0.94753 0.96318 1.02077 1.70050 1.37426 1.15093 1.33829 0.85437 0.77822 0.78449 0.79298 1.19719 1.20385 1.19163 0.93506 0.86959 0.92249 0.86589 0.86630 0.82206 0.82476 0.84137 0.87748 0.75546 0.93570 0.93535 0.97190 0.97183 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 8.95 71.98 0.64 -2.57 16 2 C 0.11 2.36 3.20 45.24 0.14 2.50 16 3 H 0.10 1.90 8.12 -2.39 -0.02 1.88 16 4 C -0.07 -1.02 6.59 30.26 0.20 -0.82 16 5 C -0.14 -3.04 6.23 -19.64 -0.12 -3.16 16 6 C -0.07 -1.21 10.04 22.25 0.22 -0.99 16 7 C -0.14 -2.41 10.06 22.28 0.22 -2.18 16 8 C -0.10 -2.24 10.02 22.19 0.22 -2.02 16 9 C -0.17 -5.24 9.46 22.51 0.21 -5.03 16 10 C 0.13 3.99 6.62 38.27 0.25 4.24 16 11 N -0.57 -17.78 2.89 -623.81 -1.80 -19.58 16 12 C 0.71 27.85 8.16 179.05 1.46 29.31 16 13 O -0.62 -29.00 14.54 -3.99 -0.06 -29.06 16 14 N -0.72 -27.68 5.11 -478.56 -2.45 -30.13 16 15 C 0.16 7.09 5.62 86.38 0.49 7.58 16 16 C 0.03 1.35 5.09 29.85 0.15 1.50 16 17 C -0.55 -30.91 9.11 25.60 0.23 -30.67 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 19 C 0.01 0.51 5.46 84.66 0.46 0.97 16 20 N -0.92 -54.02 13.29 21.45 0.28 -53.73 16 21 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H 0.05 1.12 5.97 -2.39 -0.01 1.11 16 26 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.12 1.20 7.70 -2.39 -0.02 1.19 16 30 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 31 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 32 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.10 3.93 6.30 -2.91 -0.02 3.91 16 34 H 0.41 13.50 5.70 -92.71 -0.53 12.97 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -72.59 322.28 3.32 -69.27 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.52 Total: 18.77 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 4.80 Total: -1.33 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -3.96 Total: -103.44 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.06 Total: -29.06 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -72.59 3.32 -69.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273287149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.954 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds