Wall clock time and date at job start Mon Mar 30 2020 01:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47014 * 87.83454 * 3 2 1 5 5 C 1.37101 * 119.99909 * 263.83278 * 4 3 2 6 6 H 1.08005 * 119.99749 * 195.25277 * 5 4 3 7 7 C 1.38945 * 120.00341 * 15.24218 * 5 4 3 8 8 N 1.31415 * 119.99461 * 20.17824 * 7 5 4 9 9 Si 1.86798 * 120.00451 * 200.18131 * 7 5 4 10 10 H 1.48499 * 109.47199 * 94.97623 * 9 7 5 11 11 H 1.48500 * 109.46922 * 214.97717 * 9 7 5 12 12 H 1.48497 * 109.46837 * 334.97678 * 9 7 5 13 13 C 1.34781 * 120.00478 * 83.82987 * 4 3 2 14 14 O 1.21286 * 120.00340 * 184.30538 * 13 4 3 15 15 C 1.50696 * 119.99484 * 4.30747 * 13 4 3 16 16 C 1.53120 * 109.52200 * 146.58652 * 15 13 4 17 17 C 1.53045 * 109.27816 * 177.56012 * 16 15 13 18 18 N 1.46849 * 109.52071 * 300.81857 * 17 16 15 19 19 C 1.46896 * 110.99687 * 185.84033 * 18 17 16 20 20 C 1.47207 * 109.46910 * 169.99695 * 19 18 17 21 21 C 7.71755 * 76.55557 * 163.36344 * 2 1 3 22 22 C 1.46851 * 111.20037 * 61.74260 * 18 17 16 23 23 C 1.53040 * 109.52074 * 298.25893 * 22 18 17 24 24 H 4.40633 * 5.51383 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47654 * 327.83585 * 3 2 1 26 26 H 1.08994 * 109.47233 * 207.82839 * 3 2 1 27 27 H 0.97004 * 119.99776 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.52760 * 26.45618 * 15 13 4 29 29 H 1.08997 * 109.50644 * 57.61709 * 16 15 13 30 30 H 1.09002 * 109.50101 * 297.49515 * 16 15 13 31 31 H 1.08997 * 109.45920 * 180.80574 * 17 16 15 32 32 H 1.08999 * 109.45582 * 60.82875 * 17 16 15 33 33 H 1.09000 * 109.47333 * 289.99866 * 19 18 17 34 34 H 1.09001 * 109.47453 * 50.00135 * 19 18 17 35 35 H 8.33171 * 70.74419 * 161.47117 * 2 1 3 36 36 H 1.09004 * 109.45522 * 58.26922 * 22 18 17 37 37 H 1.08996 * 109.46249 * 178.23963 * 22 18 17 38 38 H 1.08998 * 109.50450 * 299.23582 * 23 22 18 39 39 H 1.09002 * 109.49769 * 179.11863 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 -0.0513 -1.3802 5 6 3.4836 -1.2536 -1.9390 6 1 4.0664 -1.2776 -2.8480 7 6 3.0880 -2.4411 -1.3358 8 7 2.0806 -2.4456 -0.4920 9 14 3.9881 -4.0312 -1.7242 10 1 5.0343 -4.2711 -0.6980 11 1 3.0231 -5.1599 -1.7206 12 1 4.6225 -3.9266 -3.0628 13 6 3.2402 1.0827 -2.1009 14 8 3.5695 1.0317 -3.2671 15 6 2.9493 2.4141 -1.4575 16 6 3.8571 3.4860 -2.0670 17 6 3.5152 4.8459 -1.4536 18 7 2.1063 5.1636 -1.7189 19 6 1.7786 6.5219 -1.2656 20 6 0.4419 6.8941 -1.7571 21 6 -0.6204 7.1918 -2.1490 22 6 1.2136 4.1735 -1.1029 23 6 1.4868 2.7937 -1.7057 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.8691 0.5470 26 1 3.0089 0.9096 0.4797 27 1 1.8041 -3.2747 -0.0711 28 1 3.1325 2.3483 -0.3850 29 1 3.7024 3.5239 -3.1452 30 1 4.8987 3.2434 -1.8564 31 1 4.1501 5.6136 -1.8959 32 1 3.6833 4.8113 -0.3772 33 1 1.7869 6.5533 -0.1760 34 1 2.5170 7.2229 -1.6548 35 1 -1.5737 7.4579 -2.4995 36 1 1.3926 4.1423 -0.0281 37 1 0.1769 4.4530 -1.2903 38 1 1.2948 2.8206 -2.7783 39 1 0.8349 2.0564 -1.2371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281558207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:16 Heat of formation + Delta-G solvation = 93.988666 kcal Electronic energy + Delta-G solvation = -21304.082566 eV Core-core repulsion = 18215.570019 eV Total energy + Delta-G solvation = -3088.512547 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.57594 -37.97356 -35.23070 -34.25766 -32.37219 -31.67575 -31.18345 -30.55885 -27.41003 -26.40861 -24.79784 -23.02754 -22.89177 -20.05835 -18.62682 -18.16282 -17.82487 -16.58904 -16.22623 -15.89050 -15.14620 -14.72801 -14.60656 -14.22609 -14.02949 -13.49089 -13.31716 -12.95594 -12.72804 -12.58808 -12.24232 -12.13466 -11.65556 -11.54956 -11.05277 -10.99691 -10.83908 -10.54582 -10.47467 -10.37530 -10.29255 -10.09649 -10.00520 -9.30935 -9.27581 -8.81615 -8.34802 -8.24813 -7.85185 -6.31648 -3.83235 2.67779 2.82000 3.15347 3.26270 3.31465 3.67994 3.90736 4.06414 4.07614 4.18999 4.37193 4.83699 5.01960 5.07734 5.14991 5.25590 5.35604 5.45142 5.48647 5.53068 5.65726 5.71923 5.77865 5.89734 5.92424 6.01559 6.12776 6.30459 6.37777 6.44054 6.67316 6.78047 6.83295 7.04345 7.07904 7.14674 7.57701 7.58349 8.07244 8.45781 8.78666 9.16608 9.39099 9.95381 10.69312 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030219 B = 0.004729 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.357139 B = 5919.488321 C = 6459.774770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.107 4.107 3 C 0.228 3.772 4 N -0.443 5.443 5 C -0.312 4.312 6 H 0.104 0.896 7 C 0.029 3.971 8 N -0.868 5.868 9 Si 0.922 3.078 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.457 3.543 14 O -0.582 6.582 15 C -0.100 4.100 16 C -0.097 4.097 17 C 0.060 3.940 18 N -0.536 5.536 19 C 0.160 3.840 20 C -0.174 4.174 21 C -0.204 4.204 22 C 0.062 3.938 23 C -0.105 4.105 24 H 0.199 0.801 25 H 0.115 0.885 26 H 0.061 0.939 27 H 0.267 0.733 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.215 0.785 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 13.667 4.601 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.108 4.108 3 C 0.104 3.896 4 N -0.161 5.161 5 C -0.439 4.439 6 H 0.122 0.878 7 C -0.174 4.174 8 N -0.506 5.506 9 Si 0.749 3.251 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.246 3.754 14 O -0.465 6.465 15 C -0.122 4.122 16 C -0.135 4.135 17 C -0.068 4.068 18 N -0.261 5.261 19 C 0.033 3.967 20 C -0.174 4.174 21 C -0.222 4.222 22 C -0.066 4.066 23 C -0.144 4.144 24 H 0.216 0.784 25 H 0.133 0.867 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.232 0.768 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.409 13.426 3.633 13.980 hybrid contribution -0.171 -0.953 0.787 1.247 sum -1.579 12.474 4.419 13.327 Atomic orbital electron populations 1.24260 0.95370 1.06559 1.02200 1.23202 0.94345 0.95079 0.98202 1.18365 0.84243 1.01303 0.85645 1.43756 1.55919 1.06260 1.10134 1.19728 1.31529 0.81499 1.11131 0.87815 1.25262 0.95433 0.99345 0.97371 1.70081 1.22492 1.28050 1.30004 0.85975 0.79124 0.80983 0.79060 1.20435 1.21120 1.19391 1.19979 0.83648 0.85072 0.86719 1.90510 1.52533 1.86957 1.16529 1.21243 0.96528 0.94346 1.00098 1.21414 0.98517 0.91494 1.02098 1.22137 0.87837 0.98363 0.98439 1.61909 1.04054 1.00597 1.59490 1.19005 0.89034 0.91312 0.97307 1.22777 0.95233 0.99833 0.99591 1.24743 0.96882 1.00072 1.00512 1.22113 0.96624 0.92009 0.95830 1.21561 0.95335 0.94995 1.02466 0.78422 0.86696 0.92150 0.92214 0.90671 0.89892 0.91400 0.90587 0.94795 0.92657 0.88613 0.76790 0.94813 0.90807 0.90864 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.39 18.42 29.55 0.54 -4.85 16 2 C -0.11 -2.35 10.06 -37.12 -0.37 -2.72 16 3 C 0.23 5.00 4.92 -6.83 -0.03 4.97 16 4 N -0.44 -11.12 2.61 -117.94 -0.31 -11.43 16 5 C -0.31 -8.57 9.36 -14.93 -0.14 -8.71 16 6 H 0.10 3.02 7.38 -52.48 -0.39 2.63 16 7 C 0.03 0.76 4.93 -17.47 -0.09 0.68 16 8 N -0.87 -22.65 9.35 55.50 0.52 -22.13 16 9 Si 0.92 20.51 29.60 -169.99 -5.03 15.48 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.46 11.04 6.58 -10.99 -0.07 10.97 16 14 O -0.58 -16.16 15.85 5.55 0.09 -16.07 16 15 C -0.10 -1.86 1.99 -91.65 -0.18 -2.04 16 16 C -0.10 -1.58 5.06 -26.65 -0.13 -1.72 16 17 C 0.06 0.76 5.46 -3.83 -0.02 0.74 16 18 N -0.54 -7.29 4.63 -238.17 -1.10 -8.40 16 19 C 0.16 1.78 5.46 -6.61 -0.04 1.74 16 20 C -0.17 -2.12 12.32 -37.16 -0.46 -2.58 16 21 C -0.20 -2.22 19.24 29.51 0.57 -1.66 16 22 C 0.06 0.89 5.30 -3.83 -0.02 0.87 16 23 C -0.11 -1.86 5.35 -26.65 -0.14 -2.01 16 24 H 0.20 3.30 7.80 -54.09 -0.42 2.87 16 25 H 0.12 2.68 6.20 -51.93 -0.32 2.36 16 26 H 0.06 1.12 5.94 -51.93 -0.31 0.81 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.08 1.28 5.87 -51.93 -0.30 0.98 16 29 H 0.08 1.54 7.78 -51.93 -0.40 1.14 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.10 0.90 7.99 -51.93 -0.41 0.48 16 35 H 0.22 1.59 7.80 -54.09 -0.42 1.17 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 1.06 7.11 -51.93 -0.37 0.69 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.08 1.49 5.41 -51.93 -0.28 1.21 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -31.48 324.10 -6.84 -38.31 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.30 Total: 5.65 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -0.59 Total: -6.30 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.89 Total: -41.95 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.09 Total: -16.07 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.48 -6.84 -38.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281558207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.304 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds