Wall clock time and date at job start Mon Mar 30 2020 01:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47014 * 87.83454 * 3 2 1 5 5 C 1.37101 * 119.99909 * 263.83278 * 4 3 2 6 6 H 1.08005 * 119.99749 * 195.25277 * 5 4 3 7 7 C 1.38945 * 120.00341 * 15.24218 * 5 4 3 8 8 N 1.31415 * 119.99461 * 20.17824 * 7 5 4 9 9 Si 1.86798 * 120.00451 * 200.18131 * 7 5 4 10 10 H 1.48499 * 109.47199 * 94.97623 * 9 7 5 11 11 H 1.48500 * 109.46922 * 214.97717 * 9 7 5 12 12 H 1.48497 * 109.46837 * 334.97678 * 9 7 5 13 13 C 1.34781 * 120.00478 * 83.82987 * 4 3 2 14 14 O 1.21286 * 120.00340 * 184.30538 * 13 4 3 15 15 C 1.50696 * 119.99484 * 4.30747 * 13 4 3 16 16 C 1.53120 * 109.52200 * 146.58652 * 15 13 4 17 17 C 1.53045 * 109.27816 * 177.56012 * 16 15 13 18 18 N 1.46849 * 109.52071 * 300.81857 * 17 16 15 19 19 C 1.46896 * 110.99687 * 185.84033 * 18 17 16 20 20 C 1.47207 * 109.46910 * 169.99695 * 19 18 17 21 21 C 7.71755 * 76.55557 * 163.36344 * 2 1 3 22 22 C 1.46851 * 111.20037 * 61.74260 * 18 17 16 23 23 C 1.53040 * 109.52074 * 298.25893 * 22 18 17 24 24 H 4.40633 * 5.51383 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47654 * 327.83585 * 3 2 1 26 26 H 1.08994 * 109.47233 * 207.82839 * 3 2 1 27 27 H 0.97004 * 119.99776 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.52760 * 26.45618 * 15 13 4 29 29 H 1.08997 * 109.50644 * 57.61709 * 16 15 13 30 30 H 1.09002 * 109.50101 * 297.49515 * 16 15 13 31 31 H 1.08997 * 109.45920 * 180.80574 * 17 16 15 32 32 H 1.08999 * 109.45582 * 60.82875 * 17 16 15 33 33 H 1.09000 * 109.47333 * 289.99866 * 19 18 17 34 34 H 1.09001 * 109.47453 * 50.00135 * 19 18 17 35 35 H 8.33171 * 70.74419 * 161.47117 * 2 1 3 36 36 H 1.09004 * 109.45522 * 58.26922 * 22 18 17 37 37 H 1.08996 * 109.46249 * 178.23963 * 22 18 17 38 38 H 1.08998 * 109.50450 * 299.23582 * 23 22 18 39 39 H 1.09002 * 109.49769 * 179.11863 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 -0.0513 -1.3802 5 6 3.4836 -1.2536 -1.9390 6 1 4.0664 -1.2776 -2.8480 7 6 3.0880 -2.4411 -1.3358 8 7 2.0806 -2.4456 -0.4920 9 14 3.9881 -4.0312 -1.7242 10 1 5.0343 -4.2711 -0.6980 11 1 3.0231 -5.1599 -1.7206 12 1 4.6225 -3.9266 -3.0628 13 6 3.2402 1.0827 -2.1009 14 8 3.5695 1.0317 -3.2671 15 6 2.9493 2.4141 -1.4575 16 6 3.8571 3.4860 -2.0670 17 6 3.5152 4.8459 -1.4536 18 7 2.1063 5.1636 -1.7189 19 6 1.7786 6.5219 -1.2656 20 6 0.4419 6.8941 -1.7571 21 6 -0.6204 7.1918 -2.1490 22 6 1.2136 4.1735 -1.1029 23 6 1.4868 2.7937 -1.7057 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.8691 0.5470 26 1 3.0089 0.9096 0.4797 27 1 1.8041 -3.2747 -0.0711 28 1 3.1325 2.3483 -0.3850 29 1 3.7024 3.5239 -3.1452 30 1 4.8987 3.2434 -1.8564 31 1 4.1501 5.6136 -1.8959 32 1 3.6833 4.8113 -0.3772 33 1 1.7869 6.5533 -0.1760 34 1 2.5170 7.2229 -1.6548 35 1 -1.5737 7.4579 -2.4995 36 1 1.3926 4.1423 -0.0281 37 1 0.1769 4.4530 -1.2903 38 1 1.2948 2.8206 -2.7783 39 1 0.8349 2.0564 -1.2371 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281558207.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:16 Heat of formation + Delta-G solvation = 74.373167 kcal Electronic energy + Delta-G solvation = -21304.933157 eV Core-core repulsion = 18215.570019 eV Total energy + Delta-G solvation = -3089.363139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13510 -39.39028 -37.11191 -35.46614 -34.02282 -33.03900 -32.91607 -31.77189 -28.74617 -28.02081 -26.52409 -24.41015 -24.11232 -21.48330 -20.22599 -19.64565 -18.97604 -18.35965 -18.02088 -17.08816 -16.46770 -16.19682 -15.97005 -15.77651 -15.57695 -14.82550 -14.73091 -14.43567 -14.06190 -14.02831 -13.80331 -13.56839 -13.42128 -12.94936 -12.75500 -12.48711 -12.39059 -12.18058 -12.12123 -11.68787 -11.46074 -11.31682 -11.19178 -11.04839 -10.96635 -10.53623 -10.18883 -9.82045 -9.28139 -8.31613 -5.91587 1.35903 1.41974 1.53472 1.81383 1.89634 1.99244 2.14100 2.34055 2.39383 3.05020 3.11743 3.18265 3.57720 3.76318 3.86758 3.96150 3.99045 4.23850 4.27226 4.40044 4.42745 4.58435 4.61094 4.66877 4.75236 4.86012 4.88808 4.98281 5.01926 5.11037 5.16377 5.25598 5.42674 5.44150 5.47022 6.05957 6.07905 6.13487 6.46921 6.76810 7.13446 7.16534 7.44515 8.02119 8.66702 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030219 B = 0.004729 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.357139 B = 5919.488321 C = 6459.774770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.146 4.146 3 C 0.230 3.770 4 N -0.453 5.453 5 C -0.352 4.352 6 H 0.072 0.928 7 C 0.003 3.997 8 N -0.875 5.875 9 Si 0.984 3.016 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.444 3.556 14 O -0.632 6.632 15 C -0.089 4.089 16 C -0.094 4.094 17 C 0.068 3.932 18 N -0.555 5.555 19 C 0.161 3.839 20 C -0.210 4.210 21 C -0.200 4.200 22 C 0.074 3.926 23 C -0.098 4.098 24 H 0.232 0.768 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.272 0.728 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.241 0.759 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 14.911 6.407 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.148 4.148 3 C 0.108 3.892 4 N -0.170 5.170 5 C -0.479 4.479 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.512 5.512 9 Si 0.808 3.192 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.235 3.765 14 O -0.519 6.519 15 C -0.110 4.110 16 C -0.133 4.133 17 C -0.059 4.059 18 N -0.280 5.280 19 C 0.036 3.964 20 C -0.211 4.211 21 C -0.218 4.218 22 C -0.054 4.054 23 C -0.136 4.136 24 H 0.248 0.752 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.257 0.743 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.028 14.683 5.484 15.804 hybrid contribution -0.074 -1.359 0.183 1.374 sum -2.102 13.324 5.667 14.631 Atomic orbital electron populations 1.25091 0.96295 1.04873 1.00349 1.23387 0.94871 0.96672 0.99863 1.18394 0.84729 1.02187 0.83867 1.43974 1.55767 1.05891 1.11398 1.19611 1.33308 0.83524 1.11490 0.90960 1.25928 0.95616 1.01561 0.96872 1.70171 1.22405 1.28928 1.29692 0.85066 0.78284 0.77242 0.78601 1.18763 1.20365 1.20463 1.21022 0.82306 0.86802 0.86369 1.90462 1.54610 1.87966 1.18882 1.21220 0.97627 0.91519 1.00670 1.21384 0.98285 0.93239 1.00344 1.22083 0.87867 0.96374 0.99556 1.61814 1.04169 1.01700 1.60330 1.19106 0.89167 0.89789 0.98386 1.23286 0.96187 1.00948 1.00634 1.25541 0.97536 0.99023 0.99697 1.21933 0.97033 0.90053 0.96375 1.21450 0.94355 0.97199 1.00608 0.75185 0.88419 0.88741 0.91805 0.88607 0.93000 0.91058 0.88169 0.92557 0.90911 0.86804 0.74263 0.93084 0.90678 0.93975 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.67 18.42 74.32 1.37 -8.30 16 2 C -0.15 -6.35 10.06 31.12 0.31 -6.03 16 3 C 0.23 10.13 4.92 84.57 0.42 10.54 16 4 N -0.45 -23.44 2.61 -645.43 -1.68 -25.12 16 5 C -0.35 -20.13 9.36 84.04 0.79 -19.35 16 6 H 0.07 4.49 7.38 -2.91 -0.02 4.47 16 7 C 0.00 0.17 4.93 84.92 0.42 0.59 16 8 N -0.87 -45.55 9.35 21.66 0.20 -45.35 16 9 Si 0.98 42.42 29.60 68.60 2.03 44.45 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 13 C 0.44 22.29 6.58 87.66 0.58 22.87 16 14 O -0.63 -37.24 15.85 -3.05 -0.05 -37.29 16 15 C -0.09 -3.29 1.99 -11.46 -0.02 -3.31 16 16 C -0.09 -3.04 5.06 30.65 0.16 -2.88 16 17 C 0.07 1.56 5.46 86.33 0.47 2.03 16 18 N -0.55 -13.85 4.63 -907.43 -4.21 -18.06 16 19 C 0.16 3.10 5.46 84.50 0.46 3.56 16 20 C -0.21 -4.64 12.32 31.16 0.38 -4.26 16 21 C -0.20 -3.92 19.24 74.35 1.43 -2.49 16 22 C 0.07 1.99 5.30 86.33 0.46 2.45 16 23 C -0.10 -3.45 5.35 30.65 0.16 -3.29 16 24 H 0.23 7.02 7.80 -4.42 -0.03 6.99 16 25 H 0.10 4.59 6.20 -2.39 -0.01 4.58 16 26 H 0.10 3.38 5.94 -2.39 -0.01 3.37 16 27 H 0.27 13.39 8.31 -92.70 -0.77 12.62 16 28 H 0.10 3.11 5.87 -2.38 -0.01 3.10 16 29 H 0.05 1.99 7.78 -2.39 -0.02 1.97 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.10 1.85 8.01 -2.39 -0.02 1.83 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 34 H 0.11 1.75 7.99 -2.39 -0.02 1.73 16 35 H 0.24 2.92 7.80 -4.42 -0.03 2.89 16 36 H 0.05 1.21 8.14 -2.38 -0.02 1.20 16 37 H 0.07 2.01 7.11 -2.39 -0.02 2.00 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 2.53 5.41 -2.39 -0.01 2.52 16 Total: -1.00 -71.22 324.10 4.71 -66.50 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 1.03 Total: 22.73 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 7.38 Total: -7.87 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -5.68 Total: -88.53 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.05 Total: -37.29 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -71.22 4.71 -66.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281558207.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.878 kcal (2) G-P(sol) polarization free energy of solvation -71.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds