Wall clock time and date at job start Mon Mar 30 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99777 * 2 1 4 4 N 1.46897 * 109.47151 * 124.15771 * 3 2 1 5 5 C 1.46898 * 110.99905 * 300.62605 * 4 3 2 6 6 C 1.50700 * 109.47255 * 288.28272 * 5 4 3 7 7 H 1.08004 * 120.00179 * 356.06145 * 6 5 4 8 8 C 1.37872 * 120.00130 * 176.05149 * 6 5 4 9 9 N 1.31518 * 120.00084 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00062 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47180 * 89.99480 * 10 8 6 12 12 H 1.48499 * 109.47080 * 209.99655 * 10 8 6 13 13 H 1.48495 * 109.46972 * 329.99446 * 10 8 6 14 14 C 1.46897 * 111.00242 * 64.57994 * 4 3 2 15 15 C 1.50707 * 109.46965 * 66.04620 * 14 4 3 16 16 C 1.38359 * 119.85378 * 89.99945 * 15 14 4 17 17 C 1.37954 * 120.14143 * 179.97438 * 16 15 14 18 18 C 1.39574 * 119.85701 * 0.02752 * 17 16 15 19 19 C 1.47843 * 120.14546 * 179.97438 * 18 17 16 20 20 N 1.34780 * 120.00273 * 179.97438 * 19 18 17 21 21 O 1.21558 * 120.00067 * 359.97438 * 19 18 17 22 22 C 1.39570 * 119.71027 * 0.24908 * 18 17 16 23 23 C 1.37959 * 119.85368 * 359.46998 * 22 18 17 24 24 H 1.07995 * 119.99812 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00039 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.00443 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47170 * 4.15562 * 3 2 1 28 28 H 1.09006 * 109.46948 * 244.15586 * 3 2 1 29 29 H 1.08994 * 109.47452 * 48.28672 * 5 4 3 30 30 H 1.09004 * 109.46994 * 168.28661 * 5 4 3 31 31 H 0.97005 * 120.00066 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47074 * 306.04784 * 14 4 3 33 33 H 1.08998 * 109.47273 * 186.04348 * 14 4 3 34 34 H 1.07994 * 119.92881 * 0.02562 * 16 15 14 35 35 H 1.08005 * 120.06978 * 180.02562 * 17 16 15 36 36 H 0.96999 * 119.99208 * 0.02562 * 20 19 18 37 37 H 0.96995 * 120.00374 * 179.72257 * 20 19 18 38 38 H 1.08004 * 120.07576 * 179.73104 * 22 18 17 39 39 H 1.07999 * 119.93283 * 180.27505 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9817 1.3405 1.1460 5 6 2.2490 1.2055 2.4121 6 6 1.4812 2.4731 2.6856 7 1 1.5821 3.3195 2.0224 8 6 0.6496 2.5522 3.7825 9 7 -0.0209 3.6582 4.0210 10 14 0.4753 1.0885 4.9300 11 1 1.4940 1.1794 6.0067 12 1 -0.8824 1.0901 5.5316 13 1 0.6756 -0.1677 4.1638 14 6 4.0164 0.3050 1.0237 15 6 4.9022 0.6166 -0.1551 16 6 6.0306 1.3980 0.0189 17 6 6.8459 1.6866 -1.0560 18 6 6.5298 1.1889 -2.3211 19 6 7.3987 1.4946 -3.4775 20 7 7.0911 1.0121 -4.6978 21 8 8.3906 2.1812 -3.3278 22 6 5.3869 0.4061 -2.4908 23 6 4.5832 0.1201 -1.4065 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3575 2.1323 0.0745 28 1 2.6331 1.3959 -0.9249 29 1 1.5549 0.3681 2.3427 30 1 2.9549 1.0262 3.2231 31 1 -0.6062 3.7138 4.7925 32 1 3.5433 -0.6658 0.8760 33 1 4.6168 0.2820 1.9332 34 1 6.2742 1.7822 0.9984 35 1 7.7267 2.2963 -0.9188 36 1 6.2994 0.4646 -4.8173 37 1 7.6589 1.2160 -5.4573 38 1 5.1344 0.0215 -3.4679 39 1 3.7009 -0.4892 -1.5356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292094665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:50 Heat of formation + Delta-G solvation = 15.120663 kcal Electronic energy + Delta-G solvation = -20523.661606 eV Core-core repulsion = 17431.729086 eV Total energy + Delta-G solvation = -3091.932520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21574 -38.76463 -37.07222 -34.06549 -32.86986 -32.64985 -31.13321 -30.89021 -27.93752 -26.58731 -24.32768 -22.63265 -22.30155 -20.86580 -20.44464 -18.88995 -18.29502 -16.98867 -16.75669 -15.68682 -15.22795 -15.11947 -14.97807 -14.81714 -14.54272 -14.11695 -13.90991 -13.58518 -13.36890 -12.83916 -12.53932 -12.25588 -11.79141 -11.73241 -11.29618 -11.10098 -10.95145 -10.83205 -10.53993 -10.45450 -10.19815 -9.94118 -9.90226 -9.37593 -9.00364 -8.89638 -8.71199 -8.56988 -7.43046 -6.05687 -4.02554 0.81543 1.39276 2.71166 2.79420 3.26471 3.32541 3.34306 3.35340 3.83594 4.40663 4.63688 4.70515 4.87045 4.94748 5.06541 5.26533 5.34793 5.37009 5.42743 5.55724 5.74493 5.78074 5.93125 6.02066 6.07260 6.22048 6.29299 6.33441 6.53844 6.55131 6.68913 6.78133 6.89439 6.95549 7.03581 7.11406 7.20647 7.57668 7.83307 7.95935 8.06102 8.63911 9.04005 9.56166 11.07496 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.004008 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.541380 B = 6984.523984 C = 7391.971582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.187 4.187 3 C 0.085 3.915 4 N -0.512 5.512 5 C 0.159 3.841 6 C -0.503 4.503 7 H 0.080 0.920 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.871 3.129 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.077 3.923 15 C -0.031 4.031 16 C -0.107 4.107 17 C -0.058 4.058 18 C -0.153 4.153 19 C 0.566 3.434 20 N -0.854 5.854 21 O -0.545 6.545 22 C -0.088 4.088 23 C -0.124 4.124 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.001 0.999 30 H 0.020 0.980 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.401 0.599 37 H 0.403 0.597 38 H 0.121 0.879 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.999 -10.488 -14.392 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.207 4.207 3 C -0.043 4.043 4 N -0.234 5.234 5 C 0.033 3.967 6 C -0.542 4.542 7 H 0.098 0.902 8 C -0.132 4.132 9 N -0.540 5.540 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.051 4.051 15 C -0.031 4.031 16 C -0.125 4.125 17 C -0.077 4.077 18 C -0.157 4.157 19 C 0.353 3.647 20 N -0.418 5.418 21 O -0.423 6.423 22 C -0.106 4.106 23 C -0.142 4.142 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.019 0.981 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.230 0.770 37 H 0.233 0.767 38 H 0.139 0.861 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.706 -9.478 -13.950 19.458 hybrid contribution -0.908 -1.789 0.360 2.038 sum 8.797 -11.267 -13.590 19.723 Atomic orbital electron populations 1.23803 0.96100 1.01450 1.00111 1.23563 0.96777 0.99716 1.00653 1.21361 0.94751 0.94584 0.93612 1.62303 1.13347 1.44095 1.03638 1.20266 0.92735 0.97718 0.86004 1.20972 1.23769 0.98656 1.10774 0.90196 1.24866 0.95390 0.95533 0.97384 1.69892 1.28976 1.26318 1.28768 0.86931 0.77622 0.84002 0.81643 1.20227 1.21251 1.19220 1.21213 0.93962 0.94378 0.95540 1.20200 0.94136 0.93923 0.94885 1.21104 0.94318 0.97720 0.99395 1.21252 0.98911 0.96525 0.90981 1.19756 0.97602 1.04183 0.94122 1.18380 0.84464 0.78506 0.83311 1.43765 1.31567 1.56207 1.10258 1.90803 1.27851 1.38524 1.85103 1.21146 0.93707 0.97074 0.98703 1.21040 0.99748 1.01285 0.92177 0.89625 0.88035 0.88654 0.89217 0.91373 0.98138 0.96154 0.92710 0.94222 0.90103 0.84912 0.84864 0.76980 0.76678 0.86069 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 14.32 29.01 0.42 -2.41 16 2 C -0.19 -3.01 7.34 -36.02 -0.26 -3.28 16 3 C 0.08 1.50 5.32 -4.97 -0.03 1.48 16 4 N -0.51 -9.95 4.65 -238.96 -1.11 -11.06 16 5 C 0.16 3.66 3.67 -4.98 -0.02 3.64 16 6 C -0.50 -13.86 9.10 -34.44 -0.31 -14.17 16 7 H 0.08 2.43 7.86 -52.48 -0.41 2.01 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 10 Si 0.87 21.10 27.55 -169.99 -4.68 16.42 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.23 6.43 56.52 0.36 -5.87 16 14 C 0.08 1.20 4.95 -4.97 -0.02 1.17 16 15 C -0.03 -0.42 4.90 -104.53 -0.51 -0.93 16 16 C -0.11 -1.44 9.68 -39.64 -0.38 -1.82 16 17 C -0.06 -0.76 9.60 -39.19 -0.38 -1.13 16 18 C -0.15 -1.85 5.87 -104.97 -0.62 -2.47 16 19 C 0.57 6.84 8.05 -12.33 -0.10 6.74 16 20 N -0.85 -6.35 8.83 30.53 0.27 -6.08 16 21 O -0.54 -8.66 17.18 5.31 0.09 -8.57 16 22 C -0.09 -0.90 9.54 -39.19 -0.37 -1.27 16 23 C -0.12 -1.45 7.87 -39.64 -0.31 -1.76 16 24 H 0.09 1.20 8.06 -52.49 -0.42 0.77 16 25 H 0.10 1.73 7.84 -52.49 -0.41 1.32 16 26 H 0.10 1.38 6.81 -52.49 -0.36 1.02 16 27 H 0.09 1.83 7.01 -51.93 -0.36 1.47 16 28 H 0.07 1.08 5.84 -51.93 -0.30 0.77 16 29 H 0.00 0.02 5.48 -51.93 -0.28 -0.26 16 30 H 0.02 0.47 7.44 -51.93 -0.39 0.09 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.04 0.58 6.30 -51.93 -0.33 0.25 16 33 H 0.08 1.23 7.80 -51.93 -0.41 0.83 16 34 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.13 1.71 7.65 -52.48 -0.40 1.31 16 36 H 0.40 1.89 6.86 -40.82 -0.28 1.61 16 37 H 0.40 2.40 8.93 -40.82 -0.36 2.04 16 38 H 0.12 0.81 6.41 -52.48 -0.34 0.47 16 39 H 0.13 1.33 7.89 -52.49 -0.41 0.92 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -32.90 323.02 -7.86 -40.76 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.07 Total: 4.42 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -3.00 Total: -14.35 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -0.07 Total: -43.55 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.68 Total: 16.42 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.90 -7.86 -40.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292094665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.881 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds