Wall clock time and date at job start Mon Mar 30 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99777 * 2 1 4 4 N 1.46897 * 109.47151 * 124.15771 * 3 2 1 5 5 C 1.46898 * 110.99905 * 300.62605 * 4 3 2 6 6 C 1.50700 * 109.47255 * 288.28272 * 5 4 3 7 7 H 1.08004 * 120.00179 * 356.06145 * 6 5 4 8 8 C 1.37872 * 120.00130 * 176.05149 * 6 5 4 9 9 N 1.31518 * 120.00084 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 120.00062 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47180 * 89.99480 * 10 8 6 12 12 H 1.48499 * 109.47080 * 209.99655 * 10 8 6 13 13 H 1.48495 * 109.46972 * 329.99446 * 10 8 6 14 14 C 1.46897 * 111.00242 * 64.57994 * 4 3 2 15 15 C 1.50707 * 109.46965 * 66.04620 * 14 4 3 16 16 C 1.38359 * 119.85378 * 89.99945 * 15 14 4 17 17 C 1.37954 * 120.14143 * 179.97438 * 16 15 14 18 18 C 1.39574 * 119.85701 * 0.02752 * 17 16 15 19 19 C 1.47843 * 120.14546 * 179.97438 * 18 17 16 20 20 N 1.34780 * 120.00273 * 179.97438 * 19 18 17 21 21 O 1.21558 * 120.00067 * 359.97438 * 19 18 17 22 22 C 1.39570 * 119.71027 * 0.24908 * 18 17 16 23 23 C 1.37959 * 119.85368 * 359.46998 * 22 18 17 24 24 H 1.07995 * 119.99812 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00039 * 359.97438 * 1 2 3 26 26 H 1.07991 * 120.00443 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47170 * 4.15562 * 3 2 1 28 28 H 1.09006 * 109.46948 * 244.15586 * 3 2 1 29 29 H 1.08994 * 109.47452 * 48.28672 * 5 4 3 30 30 H 1.09004 * 109.46994 * 168.28661 * 5 4 3 31 31 H 0.97005 * 120.00066 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47074 * 306.04784 * 14 4 3 33 33 H 1.08998 * 109.47273 * 186.04348 * 14 4 3 34 34 H 1.07994 * 119.92881 * 0.02562 * 16 15 14 35 35 H 1.08005 * 120.06978 * 180.02562 * 17 16 15 36 36 H 0.96999 * 119.99208 * 0.02562 * 20 19 18 37 37 H 0.96995 * 120.00374 * 179.72257 * 20 19 18 38 38 H 1.08004 * 120.07576 * 179.73104 * 22 18 17 39 39 H 1.07999 * 119.93283 * 180.27505 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9817 1.3405 1.1460 5 6 2.2490 1.2055 2.4121 6 6 1.4812 2.4731 2.6856 7 1 1.5821 3.3195 2.0224 8 6 0.6496 2.5522 3.7825 9 7 -0.0209 3.6582 4.0210 10 14 0.4753 1.0885 4.9300 11 1 1.4940 1.1794 6.0067 12 1 -0.8824 1.0901 5.5316 13 1 0.6756 -0.1677 4.1638 14 6 4.0164 0.3050 1.0237 15 6 4.9022 0.6166 -0.1551 16 6 6.0306 1.3980 0.0189 17 6 6.8459 1.6866 -1.0560 18 6 6.5298 1.1889 -2.3211 19 6 7.3987 1.4946 -3.4775 20 7 7.0911 1.0121 -4.6978 21 8 8.3906 2.1812 -3.3278 22 6 5.3869 0.4061 -2.4908 23 6 4.5832 0.1201 -1.4065 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3575 2.1323 0.0745 28 1 2.6331 1.3959 -0.9249 29 1 1.5549 0.3681 2.3427 30 1 2.9549 1.0262 3.2231 31 1 -0.6062 3.7138 4.7925 32 1 3.5433 -0.6658 0.8760 33 1 4.6168 0.2820 1.9332 34 1 6.2742 1.7822 0.9984 35 1 7.7267 2.2963 -0.9188 36 1 6.2994 0.4646 -4.8173 37 1 7.6589 1.2160 -5.4573 38 1 5.1344 0.0215 -3.4679 39 1 3.7009 -0.4892 -1.5356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292094665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:50 Heat of formation + Delta-G solvation = -9.346153 kcal Electronic energy + Delta-G solvation = -20524.722567 eV Core-core repulsion = 17431.729086 eV Total energy + Delta-G solvation = -3092.993481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17758 -39.88691 -38.36366 -34.96191 -34.76707 -33.98214 -32.45817 -31.83005 -29.68156 -27.83683 -25.80802 -23.64296 -23.52505 -22.42110 -21.41819 -20.23394 -19.13247 -18.82738 -17.84408 -17.02779 -16.51439 -16.28035 -16.04925 -15.96844 -15.79440 -15.60723 -15.32846 -14.61955 -14.53780 -14.34009 -14.03919 -13.50123 -13.34595 -12.99652 -12.86879 -12.46372 -12.32197 -12.19300 -12.09288 -11.89228 -11.78308 -11.45243 -11.16908 -10.74789 -10.73616 -10.23375 -9.88330 -9.75707 -8.91806 -8.24031 -6.26040 -0.15551 0.46145 1.36346 1.37148 1.44674 1.47731 1.83081 2.36812 2.55016 2.85099 3.10377 3.48084 3.77880 3.86514 3.98980 4.06234 4.09331 4.26613 4.41356 4.45054 4.55010 4.67468 4.73633 4.89988 4.95120 5.01496 5.05066 5.10205 5.22481 5.30650 5.40717 5.58824 5.68433 5.73499 5.85305 5.86873 5.95478 6.09525 6.41322 6.41779 6.68287 6.80402 7.28699 7.37119 8.92931 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.004008 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.541380 B = 6984.523984 C = 7391.971582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.187 4.187 3 C 0.089 3.911 4 N -0.532 5.532 5 C 0.171 3.829 6 C -0.505 4.505 7 H 0.032 0.968 8 C 0.008 3.992 9 N -0.951 5.951 10 Si 0.942 3.058 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.246 1.246 14 C 0.081 3.919 15 C -0.045 4.045 16 C -0.118 4.118 17 C -0.072 4.072 18 C -0.159 4.159 19 C 0.563 3.437 20 N -0.828 5.828 21 O -0.592 6.592 22 C -0.072 4.072 23 C -0.122 4.122 24 H 0.113 0.887 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.005 0.995 30 H 0.024 0.976 31 H 0.265 0.735 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.417 0.583 37 H 0.413 0.587 38 H 0.165 0.835 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.131 -13.888 -15.816 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.206 4.206 3 C -0.039 4.039 4 N -0.254 5.254 5 C 0.044 3.956 6 C -0.544 4.544 7 H 0.050 0.950 8 C -0.188 4.188 9 N -0.592 5.592 10 Si 0.765 3.235 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.169 1.169 14 C -0.047 4.047 15 C -0.046 4.046 16 C -0.137 4.137 17 C -0.091 4.091 18 C -0.162 4.162 19 C 0.350 3.650 20 N -0.392 5.392 21 O -0.474 6.474 22 C -0.091 4.091 23 C -0.141 4.141 24 H 0.131 0.869 25 H 0.097 0.903 26 H 0.142 0.858 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.022 0.978 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.250 0.750 37 H 0.245 0.755 38 H 0.183 0.817 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.831 -12.916 -15.435 22.399 hybrid contribution -0.914 -0.647 0.656 1.298 sum 8.917 -13.563 -14.780 21.952 Atomic orbital electron populations 1.23928 0.96368 1.01747 0.99921 1.23579 0.96729 0.99598 1.00720 1.21240 0.94287 0.94468 0.93881 1.62110 1.13976 1.46724 1.02593 1.19972 0.92538 0.95029 0.88078 1.21208 1.24159 0.99246 1.09741 0.94957 1.25791 0.95034 0.98664 0.99346 1.70062 1.30333 1.29017 1.29826 0.85795 0.77636 0.80666 0.79357 1.19326 1.21140 1.16925 1.21212 0.92944 0.93888 0.96607 1.20111 0.94038 0.95127 0.95283 1.21108 0.94859 0.98279 0.99432 1.21273 0.98934 0.97150 0.91787 1.19918 0.98337 1.04285 0.93685 1.18446 0.83842 0.78253 0.84433 1.43549 1.31885 1.54784 1.09021 1.90788 1.29827 1.40884 1.85902 1.21523 0.91967 0.95298 1.00277 1.21274 1.00409 1.00924 0.91466 0.86925 0.90272 0.85783 0.93313 0.89212 0.97760 0.95838 0.92658 0.92372 0.90246 0.85456 0.85680 0.74993 0.75479 0.81745 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.48 14.32 67.78 0.97 -4.51 16 2 C -0.19 -5.53 7.34 25.65 0.19 -5.34 16 3 C 0.09 3.09 5.32 85.56 0.46 3.55 16 4 N -0.53 -20.36 4.65 -909.93 -4.23 -24.59 16 5 C 0.17 7.76 3.67 85.56 0.31 8.07 16 6 C -0.51 -28.66 9.10 25.60 0.23 -28.43 16 7 H 0.03 2.08 7.86 -2.91 -0.02 2.06 16 8 C 0.01 0.48 5.47 84.65 0.46 0.95 16 9 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 10 Si 0.94 43.29 27.55 68.60 1.89 45.18 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.25 -10.35 6.43 99.48 0.64 -9.71 16 14 C 0.08 2.35 4.95 85.56 0.42 2.77 16 15 C -0.04 -1.14 4.90 -19.80 -0.10 -1.24 16 16 C -0.12 -3.15 9.68 22.23 0.22 -2.93 16 17 C -0.07 -1.88 9.60 22.52 0.22 -1.67 16 18 C -0.16 -3.53 5.87 -20.09 -0.12 -3.65 16 19 C 0.56 12.61 8.05 86.79 0.70 13.31 16 20 N -0.83 -9.66 8.83 -175.60 -1.55 -11.21 16 21 O -0.59 -18.67 17.18 -3.90 -0.07 -18.74 16 22 C -0.07 -1.20 9.54 22.53 0.21 -0.98 16 23 C -0.12 -2.42 7.87 22.23 0.17 -2.24 16 24 H 0.11 2.78 8.06 -2.91 -0.02 2.75 16 25 H 0.08 2.72 7.84 -2.91 -0.02 2.70 16 26 H 0.12 3.00 6.81 -2.92 -0.02 2.98 16 27 H 0.05 2.07 7.01 -2.39 -0.02 2.06 16 28 H 0.09 2.68 5.84 -2.38 -0.01 2.67 16 29 H 0.00 0.21 5.48 -2.39 -0.01 0.20 16 30 H 0.02 1.06 7.44 -2.39 -0.02 1.04 16 31 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 32 H 0.06 1.48 6.30 -2.39 -0.02 1.47 16 33 H 0.08 2.31 7.80 -2.39 -0.02 2.29 16 34 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.13 3.36 7.65 -2.91 -0.02 3.34 16 36 H 0.42 2.05 6.86 -92.71 -0.64 1.42 16 37 H 0.41 3.72 8.93 -92.71 -0.83 2.89 16 38 H 0.17 1.23 6.41 -2.91 -0.02 1.21 16 39 H 0.15 2.34 7.89 -2.91 -0.02 2.31 16 Total: -1.00 -74.80 323.02 0.24 -74.56 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.45 Total: 16.23 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.35 Total: -22.35 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -5.48 Total: -94.88 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.07 Total: -18.74 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.89 Total: 45.18 kcal Total: -74.80 0.24 -74.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292094665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.214 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds