Wall clock time and date at job start Mon Mar 30 2020 01:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00369 * 2 1 4 4 N 1.46498 * 109.47233 * 124.99079 * 3 2 1 5 5 C 1.46499 * 120.00238 * 270.00561 * 4 3 2 6 6 C 1.50706 * 109.47099 * 269.99977 * 5 4 3 7 7 H 1.07999 * 119.99563 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00229 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99779 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00146 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47089 * 59.99729 * 10 8 6 12 12 H 1.48503 * 109.47126 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46998 * 299.99813 * 10 8 6 14 14 C 1.34778 * 119.99613 * 90.00265 * 4 3 2 15 15 O 1.21287 * 119.99722 * 179.97438 * 14 4 3 16 16 C 1.50700 * 120.00016 * 0.02562 * 14 4 3 17 17 C 1.53003 * 109.46895 * 179.97438 * 16 14 4 18 18 C 1.50703 * 109.46890 * 179.97438 * 17 16 14 19 19 C 1.38654 * 120.78409 * 90.00032 * 18 17 16 20 20 C 1.38209 * 119.15786 * 180.02562 * 19 18 17 21 21 N 1.31870 * 120.76375 * 0.26353 * 20 19 18 22 22 C 1.31872 * 121.72489 * 359.46946 * 21 20 19 23 23 C 1.38200 * 120.76402 * 0.52682 * 22 21 20 24 24 H 1.08000 * 120.00068 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.99870 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.00217 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.46544 * 4.99519 * 3 2 1 28 28 H 1.08995 * 109.47382 * 244.99630 * 3 2 1 29 29 H 1.08995 * 109.47494 * 29.99504 * 5 4 3 30 30 H 1.09004 * 109.47240 * 150.00436 * 5 4 3 31 31 H 0.96998 * 119.99624 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47192 * 59.99937 * 16 14 4 33 33 H 1.09002 * 109.46598 * 299.99576 * 16 14 4 34 34 H 1.08996 * 109.46980 * 60.00140 * 17 16 14 35 35 H 1.08997 * 109.47418 * 299.99880 * 17 16 14 36 36 H 1.07995 * 120.42251 * 0.04566 * 19 18 17 37 37 H 1.08002 * 119.61346 * 179.97438 * 20 19 18 38 38 H 1.08004 * 119.61160 * 180.27376 * 22 21 20 39 39 H 1.08004 * 120.41549 * 179.76941 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5586 1.8650 2.4249 6 6 2.8440 3.3437 2.4804 7 1 3.3039 3.8369 1.6368 8 6 2.5190 4.0667 3.6085 9 7 1.9595 3.4659 4.6360 10 14 2.8721 5.8997 3.6771 11 1 2.1355 6.5869 2.5860 12 1 2.4313 6.4400 4.9882 13 1 4.3299 6.1295 3.5113 14 6 4.2496 0.8661 0.9826 15 8 5.0198 0.8888 1.9193 16 6 4.6972 0.3183 -0.3480 17 6 6.1537 -0.1394 -0.2471 18 6 6.6012 -0.6879 -1.5776 19 6 7.1758 0.1404 -2.5296 20 6 7.5735 -0.3981 -3.7387 21 7 7.4071 -1.6813 -3.9931 22 6 6.8690 -2.4992 -3.1096 23 6 6.4474 -2.0324 -1.8790 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 1.4885 1.6968 2.5459 30 1 3.0987 1.3604 3.2261 31 1 1.7306 3.9746 5.4295 32 1 4.6127 1.0952 -1.1078 33 1 4.0681 -0.5285 -0.6224 34 1 6.2386 -0.9162 0.5128 35 1 6.7826 0.7075 0.0272 36 1 7.3113 1.1928 -2.3287 37 1 8.0216 0.2404 -4.4857 38 1 6.7528 -3.5452 -3.3522 39 1 6.0040 -2.7065 -1.1611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293937147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:17 Heat of formation + Delta-G solvation = 9.997189 kcal Electronic energy + Delta-G solvation = -20329.746602 eV Core-core repulsion = 17237.591911 eV Total energy + Delta-G solvation = -3092.154690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31203 -39.12468 -35.79399 -34.72320 -33.20673 -32.09185 -31.31993 -30.65637 -27.72531 -25.69882 -24.94339 -23.57137 -22.67695 -21.33568 -19.96077 -18.36584 -16.98595 -16.58245 -16.44823 -16.03690 -15.62010 -15.56464 -15.00141 -14.52201 -14.32856 -13.94437 -13.80871 -13.43457 -12.93360 -12.69071 -12.40521 -12.15111 -11.86924 -11.76886 -11.68229 -11.28224 -11.10940 -10.92814 -10.84578 -10.59864 -10.20785 -9.68227 -9.67382 -9.61140 -9.28764 -9.21417 -8.91495 -8.44788 -7.72052 -6.05892 -4.10957 1.00459 1.12779 2.42092 3.30114 3.34279 3.35148 3.40979 3.66599 3.96997 4.32434 4.42249 4.59678 4.65036 4.98111 5.02780 5.08012 5.16190 5.20842 5.27671 5.32407 5.36664 5.49511 5.56658 5.63487 5.75973 5.86210 5.92164 5.98890 6.16787 6.18468 6.34760 6.58868 6.76175 6.88198 7.06385 7.42695 7.52135 7.83282 7.90222 8.21536 8.37829 8.87428 9.05222 9.54147 11.02208 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.019985 B = 0.004111 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.712199 B = 6808.825893 C = 7589.152608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.168 4.168 3 C 0.136 3.864 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.528 4.528 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.504 3.496 15 O -0.541 6.541 16 C -0.133 4.133 17 C -0.070 4.070 18 C -0.030 4.030 19 C -0.170 4.170 20 C 0.097 3.903 21 N -0.494 5.494 22 C 0.097 3.903 23 C -0.171 4.171 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -9.242 -15.073 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.324 5.324 5 C 0.128 3.872 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.291 3.709 15 O -0.419 6.419 16 C -0.174 4.174 17 C -0.107 4.107 18 C -0.038 4.038 19 C -0.190 4.190 20 C -0.060 4.060 21 N -0.204 5.204 22 C -0.060 4.060 23 C -0.191 4.191 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.153 0.847 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.514 -9.501 -15.164 18.455 hybrid contribution -0.287 1.346 0.913 1.652 sum 4.227 -8.156 -14.250 16.954 Atomic orbital electron populations 1.23821 0.95858 1.01777 1.00549 1.23416 0.96399 0.99008 0.99933 1.20584 0.93148 0.95326 0.89749 1.48234 1.10527 1.60080 1.13574 1.19268 0.95378 0.93736 0.78803 1.21397 1.40665 0.93360 1.01257 0.92531 1.24931 0.95036 0.98754 0.95326 1.69926 1.41934 1.36279 1.05188 0.86566 0.78826 0.84893 0.77178 1.20250 1.21156 1.20173 1.20302 0.82375 0.78655 0.89561 1.90678 1.52548 1.56534 1.42114 1.21672 0.96421 1.01978 0.97285 1.20419 0.95651 1.02338 0.92321 1.20474 0.93814 0.93497 0.96032 1.22142 1.00665 1.01376 0.94847 1.22745 0.96084 0.91601 0.95521 1.67663 1.13882 1.04800 1.34027 1.22734 0.94018 0.99562 0.89690 1.22111 1.02149 0.96034 0.98808 0.88781 0.88273 0.87843 0.89477 0.90791 0.95018 0.93909 0.92651 0.89357 0.89493 0.89694 0.89546 0.84657 0.82899 0.82934 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 14.32 29.02 0.42 -1.90 16 2 C -0.17 -2.32 9.74 -36.02 -0.35 -2.68 16 3 C 0.14 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.59 -12.19 2.44 -176.43 -0.43 -12.62 16 5 C 0.25 6.40 5.16 -5.19 -0.03 6.38 16 6 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 10 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.50 9.99 7.67 -10.98 -0.08 9.91 16 15 O -0.54 -13.12 15.56 5.55 0.09 -13.03 16 16 C -0.13 -1.83 4.23 -27.88 -0.12 -1.95 16 17 C -0.07 -0.90 4.68 -27.88 -0.13 -1.03 16 18 C -0.03 -0.34 5.17 -104.32 -0.54 -0.87 16 19 C -0.17 -1.77 9.82 -39.44 -0.39 -2.16 16 20 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 21 N -0.49 -5.74 10.36 -13.25 -0.14 -5.87 16 22 C 0.10 0.98 11.18 -17.55 -0.20 0.78 16 23 C -0.17 -1.73 9.82 -39.45 -0.39 -2.12 16 24 H 0.09 1.03 8.06 -52.49 -0.42 0.60 16 25 H 0.10 1.25 7.84 -52.48 -0.41 0.83 16 26 H 0.10 1.33 7.83 -52.49 -0.41 0.92 16 27 H 0.09 1.45 7.72 -51.93 -0.40 1.04 16 28 H 0.07 0.97 6.44 -51.93 -0.33 0.63 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 32 H 0.09 1.10 7.40 -51.93 -0.38 0.71 16 33 H 0.09 1.03 7.78 -51.93 -0.40 0.63 16 34 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 35 H 0.09 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -33.41 339.02 -7.76 -41.17 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.65 Total: 0.56 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.45 Total: -6.22 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.17 Total: -44.25 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.41 -7.76 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293937147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.165 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds