Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 115.54507 * 2 1 4 4 C 1.52993 * 117.50096 * 145.66966 * 2 1 3 5 5 C 1.52995 * 60.00157 * 107.51608 * 4 2 1 6 6 H 1.09004 * 117.49884 * 252.50963 * 5 4 2 7 7 C 1.52998 * 117.50002 * 107.49063 * 5 4 2 8 8 N 1.46497 * 109.47153 * 116.37713 * 7 5 4 9 9 C 1.34773 * 119.99967 * 180.02562 * 8 7 5 10 10 O 1.21581 * 120.00244 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00209 * 179.97438 * 9 8 7 12 12 C 1.39249 * 120.00240 * 176.69233 * 11 9 8 13 13 C 1.39480 * 119.83335 * 217.52715 * 12 11 9 14 14 C 1.36374 * 120.16425 * 179.76483 * 13 12 11 15 15 C 1.40865 * 119.83160 * 0.48465 * 14 13 12 16 16 C 1.41158 * 120.16598 * 179.73983 * 15 14 13 17 17 H 1.07999 * 119.99525 * 157.94745 * 16 15 14 18 18 C 1.39891 * 119.99875 * 337.95990 * 16 15 14 19 19 N 1.30873 * 120.00151 * 327.60336 * 18 16 15 20 20 Si 1.86805 * 119.99884 * 147.60749 * 18 16 15 21 21 H 1.48501 * 109.46865 * 94.98498 * 20 18 16 22 22 H 1.48498 * 109.47021 * 214.98146 * 20 18 16 23 23 H 1.48498 * 109.46890 * 334.98482 * 20 18 16 24 24 C 1.40868 * 119.67107 * 359.77112 * 15 14 13 25 25 C 1.36377 * 119.82586 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47597 * 325.58298 * 1 2 3 27 27 H 1.09001 * 109.47072 * 85.58689 * 1 2 3 28 28 H 1.09000 * 109.47050 * 205.57925 * 1 2 3 29 29 H 1.09000 * 117.50084 * 215.00907 * 4 2 1 30 30 H 1.09006 * 117.49569 * 0.02562 * 4 2 1 31 31 H 1.08994 * 109.47215 * 236.38060 * 7 5 4 32 32 H 1.08999 * 109.46928 * 356.37831 * 7 5 4 33 33 H 0.97004 * 120.00130 * 0.02562 * 8 7 5 34 34 H 0.97001 * 120.00101 * 356.70275 * 11 9 8 35 35 H 1.08000 * 119.91593 * 359.97438 * 13 12 11 36 36 H 1.08008 * 120.08174 * 180.25169 * 14 13 12 37 37 H 0.97006 * 120.00309 * 179.97438 * 19 18 16 38 38 H 1.07994 * 120.09000 * 179.97438 * 24 15 14 39 39 H 1.08009 * 119.91355 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 2.2370 -1.1209 -0.7646 6 1 1.6121 -1.8586 -1.2680 7 6 3.5496 -0.7756 -1.4707 8 7 4.0097 -1.9342 -2.2402 9 6 5.1541 -1.8616 -2.9483 10 8 5.8050 -0.8347 -2.9481 11 7 5.5777 -2.9277 -3.6558 12 6 6.7228 -2.8312 -4.4421 13 6 6.7749 -3.4815 -5.6749 14 6 7.8912 -3.3876 -6.4526 15 6 8.9972 -2.6398 -6.0034 16 6 10.1583 -2.5424 -6.8003 17 1 10.8446 -1.7210 -6.6563 18 6 10.4198 -3.5096 -7.7765 19 7 10.0439 -4.7488 -7.5872 20 14 11.3057 -3.0323 -9.3504 21 1 12.7587 -3.3003 -9.2013 22 1 10.7688 -3.8301 -10.4820 23 1 11.0938 -1.5873 -9.6189 24 6 8.9391 -1.9902 -4.7548 25 6 7.8139 -2.0890 -3.9906 26 1 -0.3634 0.8477 0.5808 27 1 -0.3633 0.0791 -1.0246 28 1 -0.3633 -0.9269 0.4437 29 1 3.1713 -0.8745 1.2689 30 1 1.6112 -1.8582 1.2685 31 1 3.3897 0.0670 -2.1433 32 1 4.3025 -0.5102 -0.7285 33 1 3.4906 -2.7537 -2.2400 34 1 5.0847 -3.7622 -3.6173 35 1 5.9278 -4.0582 -6.0159 36 1 7.9285 -3.8885 -7.4088 37 1 10.2249 -5.4194 -8.2643 38 1 9.7833 -1.4154 -4.4037 39 1 7.7677 -1.5912 -3.0332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298436346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = 7.899843 kcal Electronic energy + Delta-G solvation = -19771.136045 eV Core-core repulsion = 16678.890407 eV Total energy + Delta-G solvation = -3092.245638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.86075 -38.37507 -37.25287 -34.51487 -34.00164 -32.90684 -29.64358 -29.39766 -28.70508 -26.44938 -24.53948 -21.79921 -21.33855 -20.95253 -20.66352 -19.86765 -17.87383 -17.23852 -16.75551 -15.57778 -15.23892 -15.04348 -14.82589 -14.24801 -13.89037 -13.74831 -13.46689 -13.37337 -12.81771 -12.62633 -12.47395 -12.02748 -11.94706 -11.70966 -11.56349 -11.38252 -11.11314 -10.90596 -10.48733 -10.34921 -10.24240 -10.10511 -9.68174 -9.53218 -9.08348 -8.84170 -8.62277 -7.48659 -7.07497 -6.82165 -4.21320 2.70891 3.01820 3.07566 3.09961 3.15949 3.24128 3.48501 3.78084 3.93184 4.34307 4.54081 4.56693 4.58136 4.80795 4.97159 5.07245 5.32332 5.45490 5.51525 5.62818 5.69177 5.73063 5.74767 5.92850 6.03077 6.24160 6.48074 6.67260 6.83541 6.92132 7.05777 7.16242 7.33598 7.37986 7.65063 7.93836 8.01735 8.08977 8.32314 8.56726 8.61410 8.89812 8.97277 9.19579 10.07453 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.060100 B = 0.002769 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.779181 B =10109.175242 C =10232.508045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.147 4.147 3 H 0.107 0.893 4 C -0.173 4.173 5 C -0.164 4.164 6 H 0.109 0.891 7 C 0.172 3.828 8 N -0.752 5.752 9 C 0.694 3.306 10 O -0.581 6.581 11 N -0.666 5.666 12 C -0.001 4.001 13 C -0.105 4.105 14 C -0.171 4.171 15 C 0.111 3.889 16 C -0.467 4.467 17 H 0.081 0.919 18 C 0.088 3.912 19 N -0.772 5.772 20 Si 0.895 3.105 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.223 4.223 25 C -0.067 4.067 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.392 0.608 34 H 0.390 0.610 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.282 0.718 38 H 0.094 0.906 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.286 1.954 10.182 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.165 4.165 3 H 0.125 0.875 4 C -0.210 4.210 5 C -0.182 4.182 6 H 0.127 0.873 7 C 0.048 3.952 8 N -0.409 5.409 9 C 0.394 3.606 10 O -0.459 6.459 11 N -0.312 5.312 12 C -0.093 4.093 13 C -0.125 4.125 14 C -0.191 4.191 15 C 0.108 3.892 16 C -0.495 4.495 17 H 0.099 0.901 18 C -0.133 4.133 19 N -0.395 5.395 20 Si 0.718 3.282 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.243 4.243 25 C -0.087 4.087 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.225 0.775 34 H 0.223 0.777 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.681 2.679 10.102 18.021 hybrid contribution -0.136 -0.809 -0.727 1.096 sum -14.817 1.870 9.375 17.633 Atomic orbital electron populations 1.21369 0.92672 1.01944 1.02002 1.22386 0.95314 0.94795 1.04051 0.87486 1.23260 1.02760 1.01290 0.93682 1.22581 0.98683 1.02736 0.94246 0.87313 1.20618 0.92562 0.87994 0.94047 1.45073 1.25454 1.16802 1.53538 1.16024 0.80939 0.84185 0.79431 1.90906 1.56992 1.30310 1.67648 1.42053 1.28589 1.12127 1.48414 1.16860 0.86888 1.11902 0.93660 1.20152 0.98057 1.01376 0.92926 1.20603 0.92979 1.05509 0.99977 1.17586 0.92382 0.89110 0.90088 1.19478 1.06658 1.08541 1.14838 0.90081 1.25922 0.94303 0.93752 0.99323 1.69954 1.35225 1.01342 1.32962 0.86531 0.79721 0.80640 0.81286 1.19520 1.19945 1.18127 1.20603 0.97931 1.09431 0.96333 1.20332 0.91655 0.97870 0.98809 0.92048 0.92079 0.92571 0.88506 0.88732 0.91453 0.91705 0.77476 0.77730 0.89363 0.87509 0.90701 0.88791 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.19 37.16 0.38 -0.40 16 2 C -0.15 -1.12 6.13 -90.62 -0.56 -1.68 16 3 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.17 -1.32 9.82 -26.74 -0.26 -1.59 16 5 C -0.16 -1.40 5.57 -90.62 -0.50 -1.90 16 6 H 0.11 0.84 8.04 -51.93 -0.42 0.42 16 7 C 0.17 2.03 5.96 -4.04 -0.02 2.01 16 8 N -0.75 -9.88 5.56 -65.23 -0.36 -10.25 16 9 C 0.69 12.85 8.37 -86.92 -0.73 12.12 16 10 O -0.58 -13.36 13.96 5.29 0.07 -13.29 16 11 N -0.67 -12.29 5.30 -14.10 -0.07 -12.36 16 12 C 0.00 -0.02 6.25 -83.57 -0.52 -0.54 16 13 C -0.10 -2.45 9.90 -39.79 -0.39 -2.85 16 14 C -0.17 -4.46 8.74 -39.26 -0.34 -4.80 16 15 C 0.11 3.04 5.57 -106.80 -0.60 2.44 16 16 C -0.47 -12.58 8.94 -37.86 -0.34 -12.92 16 17 H 0.08 2.12 8.02 -52.49 -0.42 1.70 16 18 C 0.09 2.22 4.77 -17.34 -0.08 2.13 16 19 N -0.77 -19.75 11.78 55.54 0.65 -19.10 16 20 Si 0.89 18.49 29.66 -169.99 -5.04 13.45 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.22 -5.85 9.74 -39.26 -0.38 -6.23 16 25 C -0.07 -1.67 8.59 -39.79 -0.34 -2.01 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 29 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 30 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 33 H 0.39 3.88 8.42 -40.82 -0.34 3.54 16 34 H 0.39 5.66 8.84 -40.82 -0.36 5.30 16 35 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.11 2.81 6.53 -52.48 -0.34 2.47 16 37 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 38 H 0.09 2.35 8.06 -52.49 -0.42 1.92 16 39 H 0.10 2.57 6.44 -52.48 -0.34 2.23 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -31.13 331.23 -10.00 -41.14 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.55 Total: 11.60 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -4.70 Total: -16.19 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.22 Total: -41.70 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.07 Total: -13.29 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.04 Total: 13.45 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.13 -10.00 -41.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298436346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.038 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds