Wall clock time and date at job start Mon Mar 30 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 115.54507 * 2 1 4 4 C 1.52993 * 117.50096 * 145.66966 * 2 1 3 5 5 C 1.52995 * 60.00157 * 107.51608 * 4 2 1 6 6 H 1.09004 * 117.49884 * 252.50963 * 5 4 2 7 7 C 1.52998 * 117.50002 * 107.49063 * 5 4 2 8 8 N 1.46497 * 109.47153 * 116.37713 * 7 5 4 9 9 C 1.34773 * 119.99967 * 180.02562 * 8 7 5 10 10 O 1.21581 * 120.00244 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00209 * 179.97438 * 9 8 7 12 12 C 1.39249 * 120.00240 * 176.69233 * 11 9 8 13 13 C 1.39480 * 119.83335 * 217.52715 * 12 11 9 14 14 C 1.36374 * 120.16425 * 179.76483 * 13 12 11 15 15 C 1.40865 * 119.83160 * 0.48465 * 14 13 12 16 16 C 1.41158 * 120.16598 * 179.73983 * 15 14 13 17 17 H 1.07999 * 119.99525 * 157.94745 * 16 15 14 18 18 C 1.39891 * 119.99875 * 337.95990 * 16 15 14 19 19 N 1.30873 * 120.00151 * 327.60336 * 18 16 15 20 20 Si 1.86805 * 119.99884 * 147.60749 * 18 16 15 21 21 H 1.48501 * 109.46865 * 94.98498 * 20 18 16 22 22 H 1.48498 * 109.47021 * 214.98146 * 20 18 16 23 23 H 1.48498 * 109.46890 * 334.98482 * 20 18 16 24 24 C 1.40868 * 119.67107 * 359.77112 * 15 14 13 25 25 C 1.36377 * 119.82586 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47597 * 325.58298 * 1 2 3 27 27 H 1.09001 * 109.47072 * 85.58689 * 1 2 3 28 28 H 1.09000 * 109.47050 * 205.57925 * 1 2 3 29 29 H 1.09000 * 117.50084 * 215.00907 * 4 2 1 30 30 H 1.09006 * 117.49569 * 0.02562 * 4 2 1 31 31 H 1.08994 * 109.47215 * 236.38060 * 7 5 4 32 32 H 1.08999 * 109.46928 * 356.37831 * 7 5 4 33 33 H 0.97004 * 120.00130 * 0.02562 * 8 7 5 34 34 H 0.97001 * 120.00101 * 356.70275 * 11 9 8 35 35 H 1.08000 * 119.91593 * 359.97438 * 13 12 11 36 36 H 1.08008 * 120.08174 * 180.25169 * 14 13 12 37 37 H 0.97006 * 120.00309 * 179.97438 * 19 18 16 38 38 H 1.07994 * 120.09000 * 179.97438 * 24 15 14 39 39 H 1.08009 * 119.91355 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 2.2370 -1.1209 -0.7646 6 1 1.6121 -1.8586 -1.2680 7 6 3.5496 -0.7756 -1.4707 8 7 4.0097 -1.9342 -2.2402 9 6 5.1541 -1.8616 -2.9483 10 8 5.8050 -0.8347 -2.9481 11 7 5.5777 -2.9277 -3.6558 12 6 6.7228 -2.8312 -4.4421 13 6 6.7749 -3.4815 -5.6749 14 6 7.8912 -3.3876 -6.4526 15 6 8.9972 -2.6398 -6.0034 16 6 10.1583 -2.5424 -6.8003 17 1 10.8446 -1.7210 -6.6563 18 6 10.4198 -3.5096 -7.7765 19 7 10.0439 -4.7488 -7.5872 20 14 11.3057 -3.0323 -9.3504 21 1 12.7587 -3.3003 -9.2013 22 1 10.7688 -3.8301 -10.4820 23 1 11.0938 -1.5873 -9.6189 24 6 8.9391 -1.9902 -4.7548 25 6 7.8139 -2.0890 -3.9906 26 1 -0.3634 0.8477 0.5808 27 1 -0.3633 0.0791 -1.0246 28 1 -0.3633 -0.9269 0.4437 29 1 3.1713 -0.8745 1.2689 30 1 1.6112 -1.8582 1.2685 31 1 3.3897 0.0670 -2.1433 32 1 4.3025 -0.5102 -0.7285 33 1 3.4906 -2.7537 -2.2400 34 1 5.0847 -3.7622 -3.6173 35 1 5.9278 -4.0582 -6.0159 36 1 7.9285 -3.8885 -7.4088 37 1 10.2249 -5.4194 -8.2643 38 1 9.7833 -1.4154 -4.4037 39 1 7.7677 -1.5912 -3.0332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298436346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:09 Heat of formation + Delta-G solvation = -10.814547 kcal Electronic energy + Delta-G solvation = -19771.947562 eV Core-core repulsion = 16678.890407 eV Total energy + Delta-G solvation = -3093.057155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36986 -39.45977 -38.77176 -36.22170 -35.37092 -34.67341 -31.46836 -30.98099 -29.80814 -27.58756 -26.22587 -23.47763 -22.66057 -22.12385 -21.86919 -21.15086 -19.42430 -19.04733 -18.28599 -17.06719 -16.68386 -16.43393 -15.97766 -15.73234 -15.28084 -14.96007 -14.90072 -14.49225 -14.10021 -13.94344 -13.90669 -13.79288 -13.31048 -13.05204 -12.82375 -12.66722 -12.34073 -12.31252 -12.22334 -11.93029 -11.57351 -11.32650 -11.02067 -10.98524 -10.73559 -10.50591 -10.02504 -9.46199 -8.96619 -8.69385 -6.20973 0.88097 1.15129 1.38676 1.45698 1.56916 1.78495 2.19114 2.22634 2.67381 2.81286 3.41083 3.67825 3.72814 3.91151 4.02964 4.25448 4.40221 4.46693 4.50593 4.60193 4.74584 4.90539 4.93751 4.96442 4.98861 5.11850 5.17167 5.21250 5.24392 5.29201 5.44579 5.46639 5.54013 5.64343 5.79620 6.04513 6.13134 6.24808 6.38764 6.64049 6.91037 7.01854 7.19478 7.69304 8.22525 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.060100 B = 0.002769 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.779181 B =10109.175242 C =10232.508045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.146 4.146 3 H 0.102 0.898 4 C -0.168 4.168 5 C -0.165 4.165 6 H 0.125 0.875 7 C 0.172 3.828 8 N -0.726 5.726 9 C 0.691 3.309 10 O -0.629 6.629 11 N -0.657 5.657 12 C 0.012 3.988 13 C -0.101 4.101 14 C -0.189 4.189 15 C 0.082 3.918 16 C -0.506 4.506 17 H 0.074 0.926 18 C 0.052 3.948 19 N -0.799 5.799 20 Si 0.972 3.028 21 H -0.260 1.260 22 H -0.260 1.260 23 H -0.263 1.263 24 C -0.245 4.245 25 C -0.078 4.078 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.412 0.588 34 H 0.413 0.587 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.294 0.706 38 H 0.091 0.909 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.274 1.018 10.114 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.165 4.165 3 H 0.120 0.880 4 C -0.205 4.205 5 C -0.183 4.183 6 H 0.143 0.857 7 C 0.048 3.952 8 N -0.384 5.384 9 C 0.391 3.609 10 O -0.510 6.510 11 N -0.305 5.305 12 C -0.082 4.082 13 C -0.121 4.121 14 C -0.209 4.209 15 C 0.079 3.921 16 C -0.534 4.534 17 H 0.092 0.908 18 C -0.168 4.168 19 N -0.423 5.423 20 Si 0.792 3.208 21 H -0.184 1.184 22 H -0.184 1.184 23 H -0.187 1.187 24 C -0.265 4.265 25 C -0.098 4.098 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.249 0.751 34 H 0.249 0.751 35 H 0.142 0.858 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.739 1.695 10.076 19.611 hybrid contribution 0.380 -0.510 -0.565 0.851 sum -16.360 1.184 9.511 18.960 Atomic orbital electron populations 1.21380 0.91394 1.02744 1.02294 1.22484 0.96279 0.94436 1.03268 0.88003 1.23323 1.02790 1.01528 0.92849 1.22463 0.97202 1.03962 0.94718 0.85722 1.20680 0.94000 0.87109 0.93431 1.44867 1.23614 1.18115 1.51785 1.16219 0.81806 0.83360 0.79494 1.90883 1.58766 1.32113 1.69201 1.41815 1.27527 1.13415 1.47789 1.16891 0.87553 1.09938 0.93774 1.20420 0.98274 1.01010 0.92408 1.20647 0.93726 1.06150 1.00340 1.17903 0.93391 0.90124 0.90635 1.19679 1.07236 1.09442 1.17033 0.90818 1.26717 0.94995 0.93185 1.01866 1.69944 1.35807 1.02208 1.34294 0.85374 0.78799 0.79879 0.76788 1.18423 1.18404 1.18652 1.20724 0.98666 1.10341 0.96762 1.20420 0.92196 0.98525 0.98637 0.91371 0.92021 0.91718 0.89081 0.87160 0.92839 0.92951 0.75078 0.75062 0.85786 0.88219 0.89495 0.89101 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.19 71.98 0.73 -0.49 16 2 C -0.15 -1.94 6.13 -10.80 -0.07 -2.01 16 3 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.17 -2.19 9.82 30.59 0.30 -1.89 16 5 C -0.17 -2.44 5.57 -10.80 -0.06 -2.50 16 6 H 0.12 1.49 8.04 -2.38 -0.02 1.47 16 7 C 0.17 3.87 5.96 86.38 0.51 4.39 16 8 N -0.73 -17.72 5.56 -478.56 -2.66 -20.38 16 9 C 0.69 24.84 8.37 179.06 1.50 26.34 16 10 O -0.63 -29.10 13.96 -3.97 -0.06 -29.16 16 11 N -0.66 -23.09 5.30 -316.79 -1.68 -24.77 16 12 C 0.01 0.56 6.25 38.56 0.24 0.80 16 13 C -0.10 -4.63 9.90 22.13 0.22 -4.41 16 14 C -0.19 -9.96 8.74 22.48 0.20 -9.76 16 15 C 0.08 4.64 5.57 -21.28 -0.12 4.52 16 16 C -0.51 -28.18 8.94 23.39 0.21 -27.97 16 17 H 0.07 4.04 8.02 -2.91 -0.02 4.02 16 18 C 0.05 2.61 4.77 85.24 0.41 3.02 16 19 N -0.80 -41.06 11.78 21.82 0.26 -40.80 16 20 Si 0.97 37.94 29.66 68.60 2.03 39.98 16 21 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 C -0.24 -13.39 9.74 22.48 0.22 -13.17 16 25 C -0.08 -3.96 8.59 22.13 0.19 -3.77 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.55 7.90 -2.39 -0.02 0.54 16 29 H 0.09 1.31 8.03 -2.39 -0.02 1.29 16 30 H 0.11 1.12 8.05 -2.38 -0.02 1.10 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.33 7.87 -2.39 -0.02 1.31 16 33 H 0.41 6.87 8.42 -92.71 -0.78 6.09 16 34 H 0.41 10.75 8.84 -92.71 -0.82 9.93 16 35 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 36 H 0.10 5.31 6.53 -2.91 -0.02 5.29 16 37 H 0.29 13.37 8.30 -92.70 -0.77 12.60 16 38 H 0.09 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.10 5.08 6.44 -2.91 -0.02 5.06 16 Total: -1.00 -69.09 331.23 1.85 -67.24 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.53 Total: 34.79 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 4.48 Total: -26.90 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -4.08 Total: -85.95 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.16 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.98 kcal Total: -69.09 1.85 -67.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298436346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.428 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds