Wall clock time and date at job start Mon Mar 30 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 115.56378 * 2 1 4 4 C 1.53073 * 117.49033 * 214.28799 * 2 1 3 5 5 C 1.53003 * 59.98484 * 252.51666 * 4 2 1 6 6 H 1.08995 * 117.49703 * 107.50302 * 5 4 2 7 7 C 1.53000 * 117.49577 * 252.49674 * 5 4 2 8 8 N 1.46502 * 109.47324 * 243.74709 * 7 5 4 9 9 C 1.34777 * 120.00006 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00034 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99873 * 180.02562 * 9 8 7 12 12 C 1.39236 * 119.99756 * 175.31485 * 11 9 8 13 13 C 1.39487 * 119.83117 * 215.22200 * 12 11 9 14 14 C 1.36371 * 120.16681 * 179.76324 * 13 12 11 15 15 C 1.40871 * 119.82888 * 0.51393 * 14 13 12 16 16 C 1.41159 * 120.16720 * 179.76891 * 15 14 13 17 17 H 1.08006 * 119.99429 * 328.74118 * 16 15 14 18 18 C 1.39885 * 120.00593 * 148.74281 * 16 15 14 19 19 N 1.30876 * 120.00390 * 167.75433 * 18 16 15 20 20 Si 1.86800 * 119.99930 * 347.75648 * 18 16 15 21 21 H 1.48507 * 109.46915 * 92.59366 * 20 18 16 22 22 H 1.48498 * 109.47509 * 212.59630 * 20 18 16 23 23 H 1.48501 * 109.47308 * 332.59713 * 20 18 16 24 24 C 1.40871 * 119.67053 * 359.73990 * 15 14 13 25 25 C 1.36369 * 119.83201 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.47009 * 274.31357 * 1 2 3 27 27 H 1.08998 * 109.46759 * 34.30789 * 1 2 3 28 28 H 1.08994 * 109.47312 * 154.31075 * 1 2 3 29 29 H 1.09002 * 117.51493 * 145.03902 * 4 2 1 30 30 H 1.09000 * 117.51332 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47346 * 3.75084 * 7 5 4 32 32 H 1.09004 * 109.46665 * 123.74855 * 7 5 4 33 33 H 0.96998 * 119.99616 * 359.97438 * 8 7 5 34 34 H 0.97002 * 119.99729 * 355.31616 * 11 9 8 35 35 H 1.08001 * 119.91541 * 0.02707 * 13 12 11 36 36 H 1.07997 * 120.08853 * 180.25921 * 14 13 12 37 37 H 0.97005 * 120.00501 * 179.97438 * 19 18 16 38 38 H 1.08006 * 120.08418 * 180.02562 * 24 15 14 39 39 H 1.08000 * 119.91554 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2364 -1.1210 0.7651 6 1 1.6112 -1.8582 1.2686 7 6 3.5490 -0.7761 1.4714 8 7 4.0096 -1.9355 2.2396 9 6 5.1535 -1.8629 2.9485 10 8 5.8035 -0.8354 2.9501 11 7 5.5775 -2.9296 3.6547 12 6 6.8066 -2.8885 4.3075 13 6 7.5860 -4.0422 4.3929 14 6 8.7931 -4.0084 5.0265 15 6 9.2475 -2.8071 5.6050 16 6 10.4936 -2.7653 6.2668 17 1 10.8646 -3.6429 6.7753 18 6 11.2480 -1.5873 6.2640 19 7 12.2755 -1.4663 7.0655 20 14 10.7888 -0.1868 5.1163 21 1 9.8823 0.7544 5.8219 22 1 12.0183 0.5318 4.6955 23 1 10.1006 -0.7332 3.9192 24 6 8.4523 -1.6474 5.5193 25 6 7.2496 -1.6953 4.8783 26 1 -0.3633 0.0773 1.0247 27 1 -0.3633 0.8489 -0.5792 28 1 -0.3633 -0.9260 -0.4454 29 1 3.1719 -0.8768 -1.2683 30 1 1.6115 -1.8599 -1.2676 31 1 4.3018 -0.5095 0.7295 32 1 3.3887 0.0657 2.1451 33 1 3.4908 -2.7550 2.2385 34 1 5.0263 -3.7260 3.7082 35 1 7.2344 -4.9634 3.9524 36 1 9.3973 -4.9014 5.0882 37 1 12.7989 -0.6495 7.0634 38 1 8.7944 -0.7226 5.9601 39 1 6.6387 -0.8072 4.8122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298436353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:14 Heat of formation + Delta-G solvation = 12.102215 kcal Electronic energy + Delta-G solvation = -19997.770621 eV Core-core repulsion = 16905.707212 eV Total energy + Delta-G solvation = -3092.063410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.04371 -38.48094 -37.52429 -34.56934 -34.14395 -32.98968 -29.93836 -29.79022 -29.00349 -26.53640 -24.44685 -21.79911 -21.64105 -21.19884 -20.85610 -19.88149 -18.03444 -17.38936 -17.03083 -15.76765 -15.44446 -15.10063 -14.73964 -14.38431 -13.97686 -13.73991 -13.51435 -13.47123 -13.19882 -12.61526 -12.50766 -12.45561 -12.23030 -11.87941 -11.75144 -11.60696 -10.86907 -10.73478 -10.54100 -10.38989 -10.28732 -10.11709 -9.72150 -9.58110 -9.06860 -8.97289 -8.90552 -7.73137 -7.09758 -6.85919 -4.38114 2.51629 2.75535 2.91895 3.21387 3.31073 3.42664 3.44677 3.61365 4.08628 4.27880 4.47979 4.49681 4.58894 4.69298 4.91969 5.00957 5.26810 5.41163 5.46356 5.47404 5.57794 5.63009 5.69082 5.87248 5.95302 5.97729 6.20401 6.47771 6.54158 6.71490 6.80552 6.94516 7.05850 7.23425 7.49447 7.67127 7.71135 7.93474 8.14296 8.37683 8.40808 8.67991 8.85984 9.00804 10.16176 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.034966 B = 0.003396 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.594578 B = 8243.324804 C = 8804.058766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.146 4.146 3 H 0.107 0.893 4 C -0.173 4.173 5 C -0.164 4.164 6 H 0.109 0.891 7 C 0.171 3.829 8 N -0.749 5.749 9 C 0.695 3.305 10 O -0.579 6.579 11 N -0.668 5.668 12 C 0.013 3.987 13 C -0.097 4.097 14 C -0.196 4.196 15 C 0.086 3.914 16 C -0.443 4.443 17 H 0.090 0.910 18 C 0.082 3.918 19 N -0.816 5.816 20 Si 0.913 3.087 21 H -0.271 1.271 22 H -0.294 1.294 23 H -0.242 1.242 24 C -0.228 4.228 25 C -0.063 4.063 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.393 0.607 34 H 0.393 0.607 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.284 0.716 38 H 0.102 0.898 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.882 -0.327 -12.071 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.165 4.165 3 H 0.125 0.875 4 C -0.210 4.210 5 C -0.183 4.183 6 H 0.127 0.873 7 C 0.047 3.953 8 N -0.406 5.406 9 C 0.395 3.605 10 O -0.456 6.456 11 N -0.314 5.314 12 C -0.080 4.080 13 C -0.118 4.118 14 C -0.216 4.216 15 C 0.083 3.917 16 C -0.472 4.472 17 H 0.108 0.892 18 C -0.136 4.136 19 N -0.441 5.441 20 Si 0.740 3.260 21 H -0.197 1.197 22 H -0.222 1.222 23 H -0.165 1.165 24 C -0.248 4.248 25 C -0.083 4.083 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.226 0.774 34 H 0.226 0.774 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.035 0.745 -11.968 22.497 hybrid contribution -0.570 -0.145 -0.396 0.709 sum -19.605 0.600 -12.364 23.186 Atomic orbital electron populations 1.21370 0.92637 1.01983 1.02006 1.22402 0.95334 0.94776 1.03982 0.87472 1.23277 1.02786 1.01280 0.93630 1.22573 0.98609 1.02805 0.94296 0.87299 1.20649 0.92680 0.87850 0.94132 1.45066 1.25638 1.16815 1.53121 1.16011 0.81026 0.84548 0.78896 1.90918 1.56865 1.29824 1.67978 1.42041 1.20709 1.16465 1.52201 1.16924 0.87978 0.95974 1.07090 1.20170 0.94636 0.95644 1.01318 1.20594 0.97038 0.98667 1.05274 1.17808 0.93047 0.91255 0.89633 1.19445 1.01184 0.98709 1.27896 0.89159 1.26145 0.93906 0.99145 0.94390 1.69677 1.15472 1.28067 1.30871 0.86313 0.76964 0.79989 0.82726 1.19721 1.22190 1.16483 1.20742 0.96355 0.98959 1.08714 1.20490 0.96581 0.96370 0.94897 0.92077 0.92019 0.92550 0.88485 0.88696 0.91588 0.91396 0.77383 0.77426 0.88598 0.87768 0.90531 0.88014 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.19 37.16 0.38 -0.35 16 2 C -0.15 -1.06 6.13 -90.58 -0.56 -1.61 16 3 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.17 -1.26 9.83 -26.69 -0.26 -1.52 16 5 C -0.16 -1.31 5.57 -90.62 -0.50 -1.81 16 6 H 0.11 0.76 8.04 -51.93 -0.42 0.34 16 7 C 0.17 1.91 5.96 -4.04 -0.02 1.89 16 8 N -0.75 -9.14 5.56 -65.22 -0.36 -9.50 16 9 C 0.69 12.12 8.40 -86.92 -0.73 11.39 16 10 O -0.58 -12.85 13.76 5.29 0.07 -12.78 16 11 N -0.67 -11.26 5.31 -14.10 -0.07 -11.33 16 12 C 0.01 0.28 6.30 -83.57 -0.53 -0.25 16 13 C -0.10 -2.02 9.90 -39.79 -0.39 -2.41 16 14 C -0.20 -4.56 9.74 -39.26 -0.38 -4.94 16 15 C 0.09 2.24 5.13 -106.80 -0.55 1.69 16 16 C -0.44 -12.27 9.59 -37.86 -0.36 -12.63 16 17 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 18 C 0.08 2.23 5.47 -17.34 -0.09 2.14 16 19 N -0.82 -22.42 13.93 55.54 0.77 -21.65 16 20 Si 0.91 22.34 24.39 -169.99 -4.15 18.19 16 21 H -0.27 -6.51 6.67 56.52 0.38 -6.13 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.24 -6.22 6.67 56.52 0.38 -5.84 16 24 C -0.23 -5.86 6.93 -39.26 -0.27 -6.13 16 25 C -0.06 -1.53 8.61 -39.79 -0.34 -1.87 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 29 H 0.10 0.74 8.03 -51.93 -0.42 0.33 16 30 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 31 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.39 3.46 8.42 -40.82 -0.34 3.12 16 34 H 0.39 4.95 8.83 -40.82 -0.36 4.59 16 35 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 37 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 38 H 0.10 2.64 4.40 -52.48 -0.23 2.40 16 39 H 0.11 2.74 6.22 -52.49 -0.33 2.42 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -31.82 323.95 -8.95 -40.77 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.48 Total: 7.83 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -4.62 Total: -16.41 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.34 Total: -42.48 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.15 Total: 18.19 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.82 -8.95 -40.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298436353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.874 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds