Wall clock time and date at job start Mon Mar 30 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 115.56378 * 2 1 4 4 C 1.53073 * 117.49033 * 214.28799 * 2 1 3 5 5 C 1.53003 * 59.98484 * 252.51666 * 4 2 1 6 6 H 1.08995 * 117.49703 * 107.50302 * 5 4 2 7 7 C 1.53000 * 117.49577 * 252.49674 * 5 4 2 8 8 N 1.46502 * 109.47324 * 243.74709 * 7 5 4 9 9 C 1.34777 * 120.00006 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00034 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99873 * 180.02562 * 9 8 7 12 12 C 1.39236 * 119.99756 * 175.31485 * 11 9 8 13 13 C 1.39487 * 119.83117 * 215.22200 * 12 11 9 14 14 C 1.36371 * 120.16681 * 179.76324 * 13 12 11 15 15 C 1.40871 * 119.82888 * 0.51393 * 14 13 12 16 16 C 1.41159 * 120.16720 * 179.76891 * 15 14 13 17 17 H 1.08006 * 119.99429 * 328.74118 * 16 15 14 18 18 C 1.39885 * 120.00593 * 148.74281 * 16 15 14 19 19 N 1.30876 * 120.00390 * 167.75433 * 18 16 15 20 20 Si 1.86800 * 119.99930 * 347.75648 * 18 16 15 21 21 H 1.48507 * 109.46915 * 92.59366 * 20 18 16 22 22 H 1.48498 * 109.47509 * 212.59630 * 20 18 16 23 23 H 1.48501 * 109.47308 * 332.59713 * 20 18 16 24 24 C 1.40871 * 119.67053 * 359.73990 * 15 14 13 25 25 C 1.36369 * 119.83201 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.47009 * 274.31357 * 1 2 3 27 27 H 1.08998 * 109.46759 * 34.30789 * 1 2 3 28 28 H 1.08994 * 109.47312 * 154.31075 * 1 2 3 29 29 H 1.09002 * 117.51493 * 145.03902 * 4 2 1 30 30 H 1.09000 * 117.51332 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47346 * 3.75084 * 7 5 4 32 32 H 1.09004 * 109.46665 * 123.74855 * 7 5 4 33 33 H 0.96998 * 119.99616 * 359.97438 * 8 7 5 34 34 H 0.97002 * 119.99729 * 355.31616 * 11 9 8 35 35 H 1.08001 * 119.91541 * 0.02707 * 13 12 11 36 36 H 1.07997 * 120.08853 * 180.25921 * 14 13 12 37 37 H 0.97005 * 120.00501 * 179.97438 * 19 18 16 38 38 H 1.08006 * 120.08418 * 180.02562 * 24 15 14 39 39 H 1.08000 * 119.91554 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2364 -1.1210 0.7651 6 1 1.6112 -1.8582 1.2686 7 6 3.5490 -0.7761 1.4714 8 7 4.0096 -1.9355 2.2396 9 6 5.1535 -1.8629 2.9485 10 8 5.8035 -0.8354 2.9501 11 7 5.5775 -2.9296 3.6547 12 6 6.8066 -2.8885 4.3075 13 6 7.5860 -4.0422 4.3929 14 6 8.7931 -4.0084 5.0265 15 6 9.2475 -2.8071 5.6050 16 6 10.4936 -2.7653 6.2668 17 1 10.8646 -3.6429 6.7753 18 6 11.2480 -1.5873 6.2640 19 7 12.2755 -1.4663 7.0655 20 14 10.7888 -0.1868 5.1163 21 1 9.8823 0.7544 5.8219 22 1 12.0183 0.5318 4.6955 23 1 10.1006 -0.7332 3.9192 24 6 8.4523 -1.6474 5.5193 25 6 7.2496 -1.6953 4.8783 26 1 -0.3633 0.0773 1.0247 27 1 -0.3633 0.8489 -0.5792 28 1 -0.3633 -0.9260 -0.4454 29 1 3.1719 -0.8768 -1.2683 30 1 1.6115 -1.8599 -1.2676 31 1 4.3018 -0.5095 0.7295 32 1 3.3887 0.0657 2.1451 33 1 3.4908 -2.7550 2.2385 34 1 5.0263 -3.7260 3.7082 35 1 7.2344 -4.9634 3.9524 36 1 9.3973 -4.9014 5.0882 37 1 12.7989 -0.6495 7.0634 38 1 8.7944 -0.7226 5.9601 39 1 6.6387 -0.8072 4.8122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298436353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:13 Heat of formation + Delta-G solvation = -8.837833 kcal Electronic energy + Delta-G solvation = -19998.678650 eV Core-core repulsion = 16905.707212 eV Total energy + Delta-G solvation = -3092.971438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48897 -39.63104 -38.84795 -36.22416 -35.42787 -34.82275 -31.74429 -31.44577 -29.86886 -27.59974 -26.11609 -23.60733 -23.00761 -22.14491 -21.85205 -21.13967 -19.55307 -19.17935 -18.55215 -17.24043 -16.82087 -16.35738 -15.96801 -15.69456 -15.53416 -15.15595 -14.92149 -14.57589 -14.36810 -14.11304 -14.03806 -13.92054 -13.74158 -13.06750 -12.73883 -12.69004 -12.35016 -12.33486 -12.23552 -12.07937 -11.69600 -11.31584 -11.03498 -10.99306 -10.82891 -10.67296 -10.07012 -9.59143 -8.91131 -8.87081 -6.42637 0.66832 0.87064 1.24167 1.34797 1.45656 1.70012 2.09513 2.13411 2.65195 2.79338 3.34713 3.51020 3.66718 3.89920 4.02026 4.23356 4.25150 4.37142 4.45914 4.58118 4.66260 4.73046 4.92246 4.95279 4.96394 4.98060 4.98624 5.12035 5.19971 5.23663 5.34022 5.43472 5.50001 5.53529 5.68944 5.88852 5.94208 6.13821 6.24953 6.40462 6.72094 6.85233 7.14065 7.62466 8.19868 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.034966 B = 0.003396 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.594578 B = 8243.324804 C = 8804.058766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.147 4.147 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.163 4.163 6 H 0.127 0.873 7 C 0.171 3.829 8 N -0.724 5.724 9 C 0.691 3.309 10 O -0.628 6.628 11 N -0.657 5.657 12 C 0.041 3.959 13 C -0.089 4.089 14 C -0.196 4.196 15 C 0.062 3.938 16 C -0.475 4.475 17 H 0.066 0.934 18 C 0.051 3.949 19 N -0.854 5.854 20 Si 0.961 3.039 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.239 4.239 25 C -0.085 4.085 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.414 0.586 34 H 0.419 0.581 35 H 0.147 0.853 36 H 0.119 0.881 37 H 0.292 0.708 38 H 0.091 0.909 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.076 -1.611 -14.164 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.166 4.166 3 H 0.119 0.881 4 C -0.206 4.206 5 C -0.181 4.181 6 H 0.145 0.855 7 C 0.047 3.953 8 N -0.381 5.381 9 C 0.391 3.609 10 O -0.509 6.509 11 N -0.306 5.306 12 C -0.053 4.053 13 C -0.109 4.109 14 C -0.216 4.216 15 C 0.059 3.941 16 C -0.505 4.505 17 H 0.084 0.916 18 C -0.163 4.163 19 N -0.481 5.481 20 Si 0.787 3.213 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.259 4.259 25 C -0.105 4.105 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.257 0.743 35 H 0.164 0.836 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.301 -0.584 -14.082 26.382 hybrid contribution 0.128 0.172 0.110 0.240 sum -22.174 -0.412 -13.973 26.212 Atomic orbital electron populations 1.21377 0.91403 1.02726 1.02307 1.22492 0.96272 0.94419 1.03404 0.88126 1.23335 1.02755 1.01525 0.92956 1.22464 0.97149 1.03875 0.94630 0.85514 1.20693 0.93995 0.87141 0.93512 1.44851 1.23825 1.18077 1.51318 1.16228 0.81847 0.83686 0.79091 1.90903 1.58702 1.31754 1.69544 1.41826 1.19610 1.17580 1.51584 1.17085 0.88996 0.95007 1.04223 1.20550 0.93200 0.97249 0.99906 1.20890 0.98185 0.98076 1.04400 1.17957 0.92764 0.92682 0.90712 1.19431 1.02604 0.98432 1.30053 0.91579 1.26607 0.93913 1.00516 0.95249 1.69692 1.16750 1.29197 1.32464 0.85580 0.76991 0.78290 0.80447 1.19589 1.20390 1.18702 1.20767 0.97184 0.98636 1.09339 1.20588 0.96283 0.97649 0.95968 0.91963 0.91500 0.91673 0.89189 0.87131 0.93069 0.92708 0.74856 0.74346 0.83558 0.86325 0.89756 0.89165 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.19 71.98 0.73 -0.37 16 2 C -0.15 -1.79 6.13 -10.77 -0.07 -1.85 16 3 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.17 -1.99 9.83 30.62 0.30 -1.69 16 5 C -0.16 -2.12 5.57 -10.79 -0.06 -2.18 16 6 H 0.13 1.24 8.04 -2.39 -0.02 1.22 16 7 C 0.17 3.50 5.96 86.38 0.51 4.01 16 8 N -0.72 -15.42 5.56 -478.53 -2.66 -18.08 16 9 C 0.69 22.39 8.40 179.05 1.50 23.90 16 10 O -0.63 -27.35 13.76 -3.97 -0.05 -27.41 16 11 N -0.66 -19.72 5.31 -316.78 -1.68 -21.40 16 12 C 0.04 1.65 6.30 38.57 0.24 1.89 16 13 C -0.09 -3.35 9.90 22.14 0.22 -3.14 16 14 C -0.20 -8.79 9.74 22.48 0.22 -8.58 16 15 C 0.06 3.25 5.13 -21.27 -0.11 3.14 16 16 C -0.47 -27.30 9.59 23.39 0.22 -27.07 16 17 H 0.07 3.98 8.06 -2.91 -0.02 3.95 16 18 C 0.05 2.86 5.47 85.23 0.47 3.33 16 19 N -0.85 -48.60 13.93 21.82 0.30 -48.29 16 20 Si 0.96 47.47 24.39 68.60 1.67 49.14 16 21 H -0.27 -13.06 6.67 99.48 0.66 -12.39 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.26 -13.71 6.67 99.48 0.66 -13.04 16 24 C -0.24 -12.46 6.93 22.48 0.16 -12.30 16 25 C -0.08 -4.02 8.61 22.13 0.19 -3.83 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.49 7.90 -2.39 -0.02 0.47 16 29 H 0.09 1.20 8.03 -2.39 -0.02 1.18 16 30 H 0.11 0.99 8.05 -2.39 -0.02 0.97 16 31 H 0.05 1.22 7.88 -2.39 -0.02 1.20 16 32 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.41 5.47 8.42 -92.71 -0.78 4.69 16 34 H 0.42 8.39 8.83 -92.71 -0.82 7.57 16 35 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 37 H 0.29 15.07 8.30 -92.70 -0.77 14.30 16 38 H 0.09 4.81 4.40 -2.91 -0.01 4.80 16 39 H 0.11 5.22 6.22 -2.91 -0.02 5.20 16 Total: -1.00 -71.49 323.95 1.50 -69.99 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.61 Total: 20.79 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 4.53 Total: -24.74 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -4.04 Total: -87.77 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.67 Total: 49.14 kcal Total: -71.49 1.50 -69.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298436353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.148 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds