Wall clock time and date at job start Mon Mar 30 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 115.55550 * 2 1 4 4 C 1.52994 * 117.50071 * 214.31269 * 2 1 3 5 5 C 1.52996 * 117.50088 * 145.68491 * 2 1 3 6 6 H 1.08999 * 117.52292 * 214.97544 * 5 2 1 7 7 C 1.53005 * 117.49742 * 0.02562 * 5 2 1 8 8 N 1.46506 * 109.46946 * 185.01035 * 7 5 2 9 9 C 1.34776 * 119.99818 * 179.97438 * 8 7 5 10 10 O 1.21583 * 119.99750 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99577 * 179.97438 * 9 8 7 12 12 C 1.39245 * 119.99735 * 185.16987 * 11 9 8 13 13 C 1.39481 * 119.83237 * 144.28671 * 12 11 9 14 14 C 1.36381 * 120.16680 * 180.28363 * 13 12 11 15 15 C 1.40868 * 119.82557 * 359.44917 * 14 13 12 16 16 C 1.41159 * 120.15769 * 180.30139 * 15 14 13 17 17 H 1.07997 * 120.00311 * 335.06393 * 16 15 14 18 18 C 1.39888 * 119.99654 * 155.07034 * 16 15 14 19 19 N 1.30885 * 120.00476 * 341.98013 * 18 16 15 20 20 Si 1.86804 * 120.00124 * 161.98701 * 18 16 15 21 21 H 1.48499 * 109.47371 * 94.97648 * 20 18 16 22 22 H 1.48504 * 109.47170 * 214.98129 * 20 18 16 23 23 H 1.48502 * 109.46911 * 334.97812 * 20 18 16 24 24 C 1.40864 * 119.67718 * 0.28240 * 15 14 13 25 25 C 1.36380 * 119.82668 * 359.97438 * 24 15 14 26 26 H 1.09002 * 109.47140 * 274.30753 * 1 2 3 27 27 H 1.09000 * 109.47124 * 34.30947 * 1 2 3 28 28 H 1.08999 * 109.46703 * 154.30919 * 1 2 3 29 29 H 1.09003 * 117.50073 * 145.02007 * 4 2 1 30 30 H 1.08995 * 117.51998 * 359.97438 * 4 2 1 31 31 H 1.08991 * 109.47518 * 65.00816 * 7 5 2 32 32 H 1.09000 * 109.46643 * 305.00740 * 7 5 2 33 33 H 0.97003 * 119.99845 * 359.97438 * 8 7 5 34 34 H 0.97000 * 120.00387 * 5.17319 * 11 9 8 35 35 H 1.08003 * 119.91752 * 0.03187 * 13 12 11 36 36 H 1.08000 * 120.08100 * 179.72702 * 14 13 12 37 37 H 0.96991 * 120.00364 * 180.02562 * 19 18 16 38 38 H 1.07993 * 120.09077 * 180.02562 * 24 15 14 39 39 H 1.07997 * 119.91836 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 3.1717 -0.8754 1.2684 7 6 1.3589 -2.1564 1.4711 8 7 2.2059 -3.0706 2.2413 9 6 1.6467 -4.0712 2.9503 10 8 0.4394 -4.2148 2.9511 11 7 2.4260 -4.9125 3.6583 12 6 1.8600 -6.0093 4.3030 13 6 2.5662 -7.2097 4.3793 14 6 2.0161 -8.2900 5.0041 15 6 0.7360 -8.1877 5.5833 16 6 0.1626 -9.2995 6.2372 17 1 0.4712 -10.3000 5.9725 18 6 -0.8056 -9.1053 7.2280 19 7 -0.9318 -7.9345 7.7993 20 14 -1.9185 -10.5171 7.7360 21 1 -1.3458 -11.1952 8.9265 22 1 -3.2668 -9.9901 8.0672 23 1 -2.0276 -11.4883 6.6179 24 6 0.0313 -6.9703 5.5071 25 6 0.5923 -5.9003 4.8744 26 1 -0.3633 0.0772 1.0248 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3633 -0.9261 -0.4455 29 1 3.1716 -0.8751 -1.2683 30 1 1.6117 -1.8588 -1.2681 31 1 0.7952 -2.7216 0.7290 32 1 0.6673 -1.6486 2.1433 33 1 3.1691 -2.9558 2.2409 34 1 3.3810 -4.7540 3.7189 35 1 3.5495 -7.2852 3.9390 36 1 2.5623 -9.2201 5.0585 37 1 -1.6029 -7.8000 8.4865 38 1 -0.9502 -6.8843 5.9491 39 1 0.0532 -4.9664 4.8148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298436361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:16 Heat of formation + Delta-G solvation = 10.280962 kcal Electronic energy + Delta-G solvation = -19977.980523 eV Core-core repulsion = 16885.838138 eV Total energy + Delta-G solvation = -3092.142385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88923 -38.45449 -37.24362 -34.47510 -33.96458 -32.81625 -29.44300 -29.16802 -28.67656 -26.82320 -24.57905 -21.86608 -21.42405 -21.02966 -20.29863 -19.60732 -17.72564 -17.25412 -16.80774 -16.00643 -15.32550 -14.97420 -14.55049 -14.19915 -13.92488 -13.63329 -13.45595 -13.20879 -12.88527 -12.62301 -12.38685 -11.99165 -11.79888 -11.77255 -11.39673 -11.28256 -11.07353 -11.02513 -10.63860 -10.27796 -10.21745 -9.94651 -9.64547 -9.40919 -9.03962 -8.85158 -8.76899 -7.44585 -6.92994 -6.67441 -4.23243 2.73670 3.03769 3.11135 3.12658 3.16587 3.22431 3.51643 3.78188 3.98034 4.36903 4.53752 4.59074 4.69339 4.78675 5.01227 5.08448 5.40726 5.54350 5.55141 5.64533 5.73587 5.77975 5.79596 5.96629 6.06897 6.21126 6.46372 6.67293 6.89979 6.93086 7.11540 7.17383 7.36489 7.42283 7.69198 7.92910 8.07862 8.12850 8.33501 8.56937 8.70203 8.94963 8.99493 9.19355 10.24104 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.037472 B = 0.003116 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.042330 B = 8982.463241 C = 9471.927201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.144 4.144 3 H 0.105 0.895 4 C -0.174 4.174 5 C -0.166 4.166 6 H 0.109 0.891 7 C 0.173 3.827 8 N -0.752 5.752 9 C 0.694 3.306 10 O -0.578 6.578 11 N -0.667 5.667 12 C 0.011 3.989 13 C -0.106 4.106 14 C -0.216 4.216 15 C 0.105 3.895 16 C -0.460 4.460 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.792 5.792 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.156 4.156 25 C -0.086 4.086 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.392 0.608 34 H 0.390 0.610 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.280 0.720 38 H 0.119 0.881 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 12.695 -10.972 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 H 0.123 0.877 4 C -0.211 4.211 5 C -0.184 4.184 6 H 0.127 0.873 7 C 0.049 3.951 8 N -0.409 5.409 9 C 0.395 3.605 10 O -0.455 6.455 11 N -0.313 5.313 12 C -0.082 4.082 13 C -0.127 4.127 14 C -0.236 4.236 15 C 0.102 3.898 16 C -0.490 4.490 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.417 5.417 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.176 4.176 25 C -0.106 4.106 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.225 0.775 34 H 0.223 0.777 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.832 12.687 -10.805 17.351 hybrid contribution 0.595 -0.387 0.335 0.785 sum 5.427 12.300 -10.470 17.040 Atomic orbital electron populations 1.21398 0.92552 1.02222 1.02353 1.22360 0.95718 0.94213 1.03948 0.87694 1.23230 1.02619 1.01619 0.93652 1.22555 1.01444 1.00117 0.94290 0.87343 1.20599 0.91691 0.88788 0.94058 1.45098 1.09760 1.32833 1.53199 1.16016 0.85804 0.79780 0.78945 1.90910 1.12437 1.74171 1.67980 1.42059 1.09773 1.27202 1.52255 1.16986 0.97569 0.86302 1.07293 1.20012 0.98444 0.92114 1.02128 1.20513 0.96743 0.97319 1.09061 1.17658 0.89800 0.93020 0.89335 1.19519 1.18499 0.94277 1.16670 0.90467 1.25912 0.96600 0.96679 0.95081 1.69856 1.29007 1.23822 1.19013 0.86336 0.79520 0.81635 0.79432 1.19658 1.20056 1.18449 1.20981 1.00635 0.93385 1.02598 1.20579 0.94424 0.99012 0.96588 0.91761 0.92114 0.92141 0.88795 0.88433 0.91667 0.91406 0.77516 0.77741 0.89319 0.88693 0.90911 0.86354 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.19 37.16 0.34 -0.67 16 2 C -0.14 -1.11 6.41 -90.62 -0.58 -1.69 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.17 -1.36 9.82 -26.73 -0.26 -1.62 16 5 C -0.17 -1.43 5.85 -90.62 -0.53 -1.96 16 6 H 0.11 0.82 8.04 -51.93 -0.42 0.40 16 7 C 0.17 2.08 5.04 -4.04 -0.02 2.05 16 8 N -0.75 -9.94 5.56 -65.22 -0.36 -10.31 16 9 C 0.69 12.92 8.40 -86.92 -0.73 12.19 16 10 O -0.58 -13.42 13.78 5.29 0.07 -13.35 16 11 N -0.67 -12.24 5.31 -14.10 -0.07 -12.32 16 12 C 0.01 0.26 6.30 -83.57 -0.53 -0.27 16 13 C -0.11 -2.40 9.90 -39.79 -0.39 -2.79 16 14 C -0.22 -5.36 9.74 -39.26 -0.38 -5.74 16 15 C 0.10 2.87 5.57 -106.80 -0.59 2.27 16 16 C -0.46 -12.45 9.03 -37.86 -0.34 -12.79 16 17 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 18 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 19 N -0.79 -21.00 10.99 55.54 0.61 -20.39 16 20 Si 0.91 19.05 29.60 -169.99 -5.03 14.01 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.16 -4.30 8.64 -39.26 -0.34 -4.64 16 25 C -0.09 -2.22 8.61 -39.79 -0.34 -2.56 16 26 H 0.06 0.54 7.83 -51.93 -0.41 0.13 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.81 7.94 -51.93 -0.41 0.39 16 31 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 32 H 0.07 0.89 7.77 -51.93 -0.40 0.49 16 33 H 0.39 3.87 8.42 -40.82 -0.34 3.52 16 34 H 0.39 5.55 8.84 -40.82 -0.36 5.19 16 35 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 37 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 38 H 0.12 3.38 6.19 -52.49 -0.32 3.05 16 39 H 0.11 2.81 6.24 -52.49 -0.33 2.49 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -31.47 327.95 -10.11 -41.59 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.48 Total: 12.20 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -4.79 Total: -16.38 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.17 Total: -43.01 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.07 Total: -13.35 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.47 -10.11 -41.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298436361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.869 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds