Wall clock time and date at job start Mon Mar 30 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 115.55550 * 2 1 4 4 C 1.52994 * 117.50071 * 214.31269 * 2 1 3 5 5 C 1.52996 * 117.50088 * 145.68491 * 2 1 3 6 6 H 1.08999 * 117.52292 * 214.97544 * 5 2 1 7 7 C 1.53005 * 117.49742 * 0.02562 * 5 2 1 8 8 N 1.46506 * 109.46946 * 185.01035 * 7 5 2 9 9 C 1.34776 * 119.99818 * 179.97438 * 8 7 5 10 10 O 1.21583 * 119.99750 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99577 * 179.97438 * 9 8 7 12 12 C 1.39245 * 119.99735 * 185.16987 * 11 9 8 13 13 C 1.39481 * 119.83237 * 144.28671 * 12 11 9 14 14 C 1.36381 * 120.16680 * 180.28363 * 13 12 11 15 15 C 1.40868 * 119.82557 * 359.44917 * 14 13 12 16 16 C 1.41159 * 120.15769 * 180.30139 * 15 14 13 17 17 H 1.07997 * 120.00311 * 335.06393 * 16 15 14 18 18 C 1.39888 * 119.99654 * 155.07034 * 16 15 14 19 19 N 1.30885 * 120.00476 * 341.98013 * 18 16 15 20 20 Si 1.86804 * 120.00124 * 161.98701 * 18 16 15 21 21 H 1.48499 * 109.47371 * 94.97648 * 20 18 16 22 22 H 1.48504 * 109.47170 * 214.98129 * 20 18 16 23 23 H 1.48502 * 109.46911 * 334.97812 * 20 18 16 24 24 C 1.40864 * 119.67718 * 0.28240 * 15 14 13 25 25 C 1.36380 * 119.82668 * 359.97438 * 24 15 14 26 26 H 1.09002 * 109.47140 * 274.30753 * 1 2 3 27 27 H 1.09000 * 109.47124 * 34.30947 * 1 2 3 28 28 H 1.08999 * 109.46703 * 154.30919 * 1 2 3 29 29 H 1.09003 * 117.50073 * 145.02007 * 4 2 1 30 30 H 1.08995 * 117.51998 * 359.97438 * 4 2 1 31 31 H 1.08991 * 109.47518 * 65.00816 * 7 5 2 32 32 H 1.09000 * 109.46643 * 305.00740 * 7 5 2 33 33 H 0.97003 * 119.99845 * 359.97438 * 8 7 5 34 34 H 0.97000 * 120.00387 * 5.17319 * 11 9 8 35 35 H 1.08003 * 119.91752 * 0.03187 * 13 12 11 36 36 H 1.08000 * 120.08100 * 179.72702 * 14 13 12 37 37 H 0.96991 * 120.00364 * 180.02562 * 19 18 16 38 38 H 1.07993 * 120.09077 * 180.02562 * 24 15 14 39 39 H 1.07997 * 119.91836 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 3.1717 -0.8754 1.2684 7 6 1.3589 -2.1564 1.4711 8 7 2.2059 -3.0706 2.2413 9 6 1.6467 -4.0712 2.9503 10 8 0.4394 -4.2148 2.9511 11 7 2.4260 -4.9125 3.6583 12 6 1.8600 -6.0093 4.3030 13 6 2.5662 -7.2097 4.3793 14 6 2.0161 -8.2900 5.0041 15 6 0.7360 -8.1877 5.5833 16 6 0.1626 -9.2995 6.2372 17 1 0.4712 -10.3000 5.9725 18 6 -0.8056 -9.1053 7.2280 19 7 -0.9318 -7.9345 7.7993 20 14 -1.9185 -10.5171 7.7360 21 1 -1.3458 -11.1952 8.9265 22 1 -3.2668 -9.9901 8.0672 23 1 -2.0276 -11.4883 6.6179 24 6 0.0313 -6.9703 5.5071 25 6 0.5923 -5.9003 4.8744 26 1 -0.3633 0.0772 1.0248 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3633 -0.9261 -0.4455 29 1 3.1716 -0.8751 -1.2683 30 1 1.6117 -1.8588 -1.2681 31 1 0.7952 -2.7216 0.7290 32 1 0.6673 -1.6486 2.1433 33 1 3.1691 -2.9558 2.2409 34 1 3.3810 -4.7540 3.7189 35 1 3.5495 -7.2852 3.9390 36 1 2.5623 -9.2201 5.0585 37 1 -1.6029 -7.8000 8.4865 38 1 -0.9502 -6.8843 5.9491 39 1 0.0532 -4.9664 4.8148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298436361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:16 Heat of formation + Delta-G solvation = -9.121064 kcal Electronic energy + Delta-G solvation = -19978.821858 eV Core-core repulsion = 16885.838138 eV Total energy + Delta-G solvation = -3092.983720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39774 -39.51483 -38.81814 -36.21058 -35.34072 -34.59561 -31.39015 -30.89281 -29.51844 -28.02378 -26.34127 -23.27612 -22.89369 -22.46290 -21.65841 -20.69971 -19.28032 -19.09137 -18.19246 -17.15316 -17.01495 -16.44182 -15.87370 -15.70967 -15.40305 -14.92633 -14.56437 -14.46859 -14.40417 -13.94402 -13.81432 -13.64915 -13.22384 -13.10954 -12.86934 -12.75778 -12.41509 -12.38887 -12.12601 -11.80013 -11.53427 -11.23833 -11.01320 -10.94291 -10.78149 -10.63624 -10.02813 -9.42382 -8.82623 -8.57462 -6.24370 0.89048 1.17087 1.38698 1.47700 1.54937 1.77011 2.20006 2.23503 2.77935 2.81324 3.41858 3.66783 3.76806 3.91788 3.96133 4.27031 4.45240 4.46107 4.51484 4.60761 4.73120 4.91666 4.93323 4.98347 5.00706 5.12026 5.14946 5.20294 5.24786 5.32252 5.43142 5.46217 5.53479 5.69636 5.81884 6.11631 6.14587 6.23552 6.38532 6.71121 6.95101 7.04318 7.19584 7.68791 8.35293 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.037472 B = 0.003116 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.042330 B = 8982.463241 C = 9471.927201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.140 4.140 3 H 0.124 0.876 4 C -0.169 4.169 5 C -0.168 4.168 6 H 0.128 0.872 7 C 0.173 3.827 8 N -0.726 5.726 9 C 0.690 3.310 10 O -0.628 6.628 11 N -0.657 5.657 12 C 0.024 3.976 13 C -0.099 4.099 14 C -0.224 4.224 15 C 0.072 3.928 16 C -0.495 4.495 17 H 0.081 0.919 18 C 0.031 3.969 19 N -0.827 5.827 20 Si 0.983 3.017 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.258 1.258 24 C -0.181 4.181 25 C -0.101 4.101 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.413 0.587 34 H 0.414 0.586 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.287 0.713 38 H 0.094 0.906 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 13.213 -12.116 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 H 0.142 0.858 4 C -0.206 4.206 5 C -0.186 4.186 6 H 0.146 0.854 7 C 0.049 3.951 8 N -0.383 5.383 9 C 0.390 3.610 10 O -0.509 6.509 11 N -0.305 5.305 12 C -0.071 4.071 13 C -0.119 4.119 14 C -0.244 4.244 15 C 0.070 3.930 16 C -0.525 4.525 17 H 0.099 0.901 18 C -0.184 4.184 19 N -0.453 5.453 20 Si 0.803 3.197 21 H -0.183 1.183 22 H -0.194 1.194 23 H -0.182 1.182 24 C -0.201 4.201 25 C -0.121 4.121 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.250 0.750 34 H 0.251 0.749 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.991 13.256 -11.978 19.185 hybrid contribution 0.020 -0.400 0.584 0.708 sum 7.011 12.856 -11.394 18.554 Atomic orbital electron populations 1.21427 0.93207 1.02330 1.01937 1.22471 0.95338 0.94888 1.03132 0.85839 1.23289 1.03259 1.01218 0.92802 1.22465 1.01703 0.99680 0.94792 0.85385 1.20641 0.92142 0.88974 0.93368 1.44877 1.11035 1.31014 1.51420 1.16244 0.85143 0.80452 0.79143 1.90891 1.14892 1.75544 1.69568 1.41808 1.10947 1.26006 1.51735 1.17034 0.96400 0.87926 1.05699 1.20369 0.99990 0.90736 1.00792 1.20811 0.95973 0.98880 1.08732 1.17998 0.91239 0.93153 0.90642 1.19799 1.20415 0.94377 1.17900 0.90129 1.26824 0.97497 0.99464 0.94581 1.69925 1.29808 1.25936 1.19640 0.85190 0.77289 0.77961 0.79245 1.18347 1.19449 1.18155 1.20861 1.00299 0.94667 1.04312 1.20594 0.96045 0.98059 0.97438 0.92682 0.90699 0.93198 0.86907 0.89308 0.93231 0.92908 0.75006 0.74853 0.84715 0.87058 0.90281 0.88757 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.14 -1.84 6.41 -10.80 -0.07 -1.91 16 3 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.17 -2.20 9.82 30.59 0.30 -1.90 16 5 C -0.17 -2.49 5.85 -10.79 -0.06 -2.56 16 6 H 0.13 1.45 8.04 -2.39 -0.02 1.43 16 7 C 0.17 4.00 5.04 86.38 0.44 4.43 16 8 N -0.73 -17.89 5.56 -478.53 -2.66 -20.55 16 9 C 0.69 25.11 8.40 179.06 1.50 26.61 16 10 O -0.63 -29.79 13.78 -3.98 -0.05 -29.85 16 11 N -0.66 -22.86 5.31 -316.79 -1.68 -24.54 16 12 C 0.02 1.07 6.30 38.56 0.24 1.31 16 13 C -0.10 -4.23 9.90 22.14 0.22 -4.01 16 14 C -0.22 -10.98 9.74 22.48 0.22 -10.77 16 15 C 0.07 4.07 5.57 -21.28 -0.12 3.95 16 16 C -0.50 -27.54 9.03 23.39 0.21 -27.33 16 17 H 0.08 4.24 7.91 -2.91 -0.02 4.22 16 18 C 0.03 1.62 5.13 85.23 0.44 2.05 16 19 N -0.83 -45.52 10.99 21.82 0.24 -45.28 16 20 Si 0.98 39.61 29.60 68.60 2.03 41.64 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 24 C -0.18 -10.47 8.64 22.48 0.19 -10.28 16 25 C -0.10 -5.39 8.61 22.14 0.19 -5.20 16 26 H 0.05 0.92 7.83 -2.39 -0.02 0.90 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.84 7.90 -2.39 -0.02 0.82 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.33 7.94 -2.39 -0.02 1.31 16 31 H 0.05 1.32 7.87 -2.39 -0.02 1.30 16 32 H 0.05 1.40 7.77 -2.39 -0.02 1.38 16 33 H 0.41 6.79 8.42 -92.71 -0.78 6.01 16 34 H 0.41 10.36 8.84 -92.71 -0.82 9.54 16 35 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 36 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 37 H 0.29 14.29 8.30 -92.72 -0.77 13.52 16 38 H 0.09 5.77 6.19 -2.91 -0.02 5.75 16 39 H 0.09 5.18 6.24 -2.91 -0.02 5.17 16 Total: -1.00 -71.64 327.95 1.71 -69.93 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.53 Total: 35.54 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.36 Total: -26.89 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -4.10 Total: -90.37 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.05 Total: -29.85 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -71.64 1.71 -69.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298436361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.804 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds