Wall clock time and date at job start Mon Mar 30 2020 02:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87874 * 2 1 4 4 C 1.54311 * 109.88907 * 121.20224 * 2 1 3 5 5 H 1.09001 * 110.70757 * 23.13258 * 4 2 1 6 6 C 1.50697 * 110.70524 * 260.07305 * 4 2 1 7 7 O 1.21291 * 120.00359 * 359.97438 * 6 4 2 8 8 N 1.34780 * 119.99931 * 180.02562 * 6 4 2 9 9 C 1.37096 * 120.00080 * 180.02562 * 8 6 4 10 10 H 1.07999 * 119.99880 * 359.97438 * 9 8 6 11 11 C 1.38954 * 120.00239 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99647 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00165 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46735 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46881 * 119.99464 * 13 11 9 16 16 H 1.48491 * 109.46947 * 239.99781 * 13 11 9 17 17 C 1.55139 * 103.02141 * 141.68794 * 4 2 1 18 18 C 1.54903 * 101.65077 * 324.34980 * 17 4 2 19 19 N 1.47444 * 109.88844 * 238.97440 * 2 1 3 20 20 C 1.39677 * 110.99882 * 3.84714 * 19 2 1 21 21 C 1.38911 * 120.07775 * 283.80470 * 20 19 2 22 22 C 1.38102 * 119.92656 * 180.27561 * 21 20 19 23 23 C 1.38292 * 120.07340 * 0.02562 * 22 21 20 24 24 C 1.38281 * 120.15071 * 359.97438 * 23 22 21 25 25 C 1.38105 * 120.07489 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47212 * 187.54424 * 1 2 3 27 27 H 1.09000 * 109.47224 * 307.54508 * 1 2 3 28 28 H 1.08998 * 109.47390 * 67.54583 * 1 2 3 29 29 H 0.97002 * 120.00317 * 359.97438 * 8 6 4 30 30 H 0.97003 * 119.99594 * 180.02562 * 12 11 9 31 31 H 1.09005 * 110.98618 * 82.43534 * 17 4 2 32 32 H 1.08992 * 110.99428 * 206.21988 * 17 4 2 33 33 H 1.08998 * 110.37363 * 278.23524 * 18 17 4 34 34 H 1.09002 * 110.37468 * 155.90122 * 18 17 4 35 35 H 1.07998 * 120.03773 * 0.25399 * 21 20 19 36 36 H 1.07997 * 119.96593 * 180.02562 * 22 21 20 37 37 H 1.07997 * 119.92169 * 180.02562 * 23 22 21 38 38 H 1.08000 * 119.96615 * 180.02562 * 24 23 22 39 39 H 1.08001 * 120.03790 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9007 1.0251 0.0000 4 6 2.0550 -0.7517 1.2412 5 1 1.3044 -1.4474 1.6165 6 6 2.4648 0.2192 2.3183 7 8 2.3561 1.4128 2.1323 8 7 2.9530 -0.2388 3.4882 9 6 3.3253 0.6445 4.4683 10 1 3.2278 1.7073 4.3029 11 6 3.8292 0.1724 5.6742 12 7 3.9484 -1.1207 5.8752 13 14 4.3372 1.3760 7.0095 14 1 4.1059 2.7650 6.5378 15 1 3.5321 1.1274 8.2322 16 1 5.7778 1.1923 7.3194 17 6 3.2892 -1.5145 0.6918 18 6 2.8189 -1.8821 -0.7376 19 7 2.0316 -0.7146 -1.1881 20 6 0.9784 -1.1104 -2.0159 21 6 0.1923 -2.2017 -1.6686 22 6 -0.8446 -2.5938 -2.4922 23 6 -1.1005 -1.9016 -3.6617 24 6 -0.3199 -0.8147 -4.0104 25 6 0.7187 -0.4173 -3.1914 26 1 -0.3633 -1.0187 0.1349 27 1 -0.3634 0.6262 0.8148 28 1 -0.3634 0.3925 -0.9497 29 1 3.0404 -1.1933 3.6369 30 1 4.2998 -1.4503 6.7171 31 1 4.1657 -0.8673 0.6600 32 1 3.4885 -2.4100 1.2802 33 1 2.1939 -2.7748 -0.7137 34 1 3.6772 -2.0363 -1.3916 35 1 0.3920 -2.7432 -0.7558 36 1 -1.4565 -3.4419 -2.2226 37 1 -1.9122 -2.2100 -4.3037 38 1 -0.5225 -0.2760 -4.9243 39 1 1.3277 0.4319 -3.4641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335785290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:45 Heat of formation + Delta-G solvation = -18.613052 kcal Electronic energy + Delta-G solvation = -21136.146821 eV Core-core repulsion = 18042.751498 eV Total energy + Delta-G solvation = -3093.395324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91496 -40.09246 -38.33757 -36.02509 -33.82758 -33.02776 -32.34503 -31.81162 -29.52916 -27.59046 -26.34853 -23.75259 -23.50355 -22.69221 -21.16770 -20.52566 -19.85459 -18.18644 -18.06240 -16.91493 -16.68547 -16.11659 -16.03859 -15.79895 -15.43102 -15.22658 -14.88877 -14.68512 -14.29322 -13.86452 -13.60815 -13.38694 -13.22221 -13.05987 -12.96932 -12.72076 -12.47311 -12.44125 -12.19541 -12.13216 -11.99954 -11.81498 -11.64094 -11.54052 -10.36412 -10.04848 -9.78868 -9.71122 -9.17721 -8.49457 -5.98473 0.41679 0.54412 1.34680 1.40671 1.54805 1.99224 2.27845 2.77493 2.92149 3.15412 3.16595 3.53794 3.73834 3.94740 4.06723 4.15515 4.22440 4.27522 4.31501 4.41609 4.47285 4.58107 4.62345 4.63156 4.76332 4.82780 4.91763 4.97545 5.08191 5.12196 5.19410 5.31488 5.39132 5.55140 5.61935 5.67331 5.84215 5.96785 6.00768 6.52553 6.55936 7.08787 7.51666 8.06555 8.67903 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.043609 B = 0.003856 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.908238 B = 7260.300921 C = 7406.666662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.098 3.902 3 H 0.071 0.929 4 C -0.109 4.109 5 H 0.106 0.894 6 C 0.449 3.551 7 O -0.632 6.632 8 N -0.565 5.565 9 C -0.337 4.337 10 H 0.078 0.922 11 C -0.010 4.010 12 N -0.917 5.917 13 Si 0.992 3.008 14 H -0.274 1.274 15 H -0.269 1.269 16 H -0.270 1.270 17 C -0.113 4.113 18 C 0.049 3.951 19 N -0.503 5.503 20 C 0.084 3.916 21 C -0.159 4.159 22 C -0.114 4.114 23 C -0.130 4.130 24 C -0.115 4.115 25 C -0.121 4.121 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.397 0.603 30 H 0.279 0.721 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -7.358 -16.301 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 H 0.089 0.911 4 C -0.131 4.131 5 H 0.124 0.876 6 C 0.237 3.763 7 O -0.520 6.520 8 N -0.200 5.200 9 C -0.466 4.466 10 H 0.096 0.904 11 C -0.210 4.210 12 N -0.558 5.558 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.195 1.195 16 H -0.195 1.195 17 C -0.151 4.151 18 C -0.077 4.077 19 N -0.224 5.224 20 C -0.010 4.010 21 C -0.178 4.178 22 C -0.133 4.133 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.140 4.140 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.231 0.769 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.513 -6.340 -16.527 19.230 hybrid contribution 0.063 -0.172 1.552 1.563 sum -7.450 -6.511 -14.975 17.949 Atomic orbital electron populations 1.22327 0.94459 1.02428 1.01848 1.22066 0.94689 0.97986 0.86093 0.91052 1.22370 0.99819 0.96883 0.94042 0.87645 1.20482 0.82475 0.89275 0.84100 1.90475 1.61320 1.18789 1.81416 1.41898 1.55795 1.09499 1.12826 1.19723 1.41098 0.91052 0.94742 0.90414 1.26034 0.96595 0.98353 1.00026 1.69672 1.45763 1.13288 1.27059 0.84883 0.78285 0.77799 0.77452 1.19890 1.19455 1.19485 1.22678 0.95989 1.00258 0.96200 1.23234 0.98070 0.91808 0.94575 1.61395 1.20744 1.24121 1.16148 1.19003 0.92465 0.95322 0.94258 1.21765 0.96937 0.98606 1.00531 1.21304 0.97107 1.00295 0.94584 1.21474 1.00264 0.95719 0.97295 1.21354 0.94651 0.97343 0.99940 1.21167 0.98741 1.00346 0.93724 0.90865 0.93457 0.91562 0.76930 0.91193 0.92134 0.88343 0.90733 0.88807 0.85813 0.84124 0.83622 0.83792 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 7.76 71.98 0.56 -4.12 16 2 C 0.10 3.40 3.39 45.26 0.15 3.55 16 3 H 0.07 3.06 6.81 -2.38 -0.02 3.05 16 4 C -0.11 -3.92 2.86 -10.36 -0.03 -3.95 16 5 H 0.11 3.40 7.74 -2.39 -0.02 3.39 16 6 C 0.45 21.97 7.08 87.66 0.62 22.59 16 7 O -0.63 -36.08 15.00 -3.06 -0.05 -36.12 16 8 N -0.56 -29.35 5.29 -306.98 -1.62 -30.97 16 9 C -0.34 -19.32 9.68 84.04 0.81 -18.50 16 10 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 11 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 12 N -0.92 -49.30 13.05 21.66 0.28 -49.01 16 13 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 C -0.11 -3.46 6.51 31.98 0.21 -3.25 16 18 C 0.05 1.26 6.52 86.77 0.57 1.83 16 19 N -0.50 -14.85 5.16 -661.56 -3.42 -18.26 16 20 C 0.08 2.12 3.15 38.21 0.12 2.24 16 21 C -0.16 -3.45 6.38 22.40 0.14 -3.31 16 22 C -0.11 -2.02 10.04 22.25 0.22 -1.80 16 23 C -0.13 -2.09 10.04 22.29 0.22 -1.87 16 24 C -0.11 -2.06 10.04 22.25 0.22 -1.84 16 25 C -0.12 -2.81 9.54 22.40 0.21 -2.60 16 26 H 0.07 1.97 5.82 -2.39 -0.01 1.95 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.93 6.68 -2.39 -0.02 1.91 16 29 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 30 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 31 H 0.06 2.12 8.04 -2.38 -0.02 2.10 16 32 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 1.63 5.71 -2.39 -0.01 1.62 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.12 2.58 6.45 -2.91 -0.02 2.56 16 36 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -67.09 315.13 2.06 -65.03 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.33 Total: 35.37 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 4.51 Total: -11.10 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -4.76 Total: -98.25 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.05 Total: -36.12 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -67.09 2.06 -65.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335785290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.413 kcal (2) G-P(sol) polarization free energy of solvation -67.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds