Wall clock time and date at job start Mon Mar 30 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21514 * 119.99932 * 359.97438 * 14 13 3 16 16 C 1.48171 * 120.00480 * 180.02562 * 14 13 3 17 17 C 1.39309 * 119.72404 * 179.97438 * 16 14 13 18 18 C 1.38589 * 119.05652 * 179.97438 * 17 16 14 19 19 C 1.38626 * 118.49079 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.32577 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.50252 * 188.61787 * 20 19 18 22 22 C 1.53003 * 60.00076 * 252.51341 * 21 20 19 23 23 C 1.38561 * 119.35094 * 359.97438 * 19 18 17 24 24 N 1.31518 * 120.90305 * 359.74555 * 23 19 18 25 25 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 26 26 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 27 27 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 29 29 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 30 30 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 31 31 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 32 32 H 1.08000 * 120.47146 * 359.95615 * 17 16 14 33 33 H 1.07997 * 120.75484 * 180.02562 * 18 17 16 34 34 H 1.08999 * 115.55375 * 334.33212 * 20 19 18 35 35 H 1.09000 * 117.49213 * 0.02562 * 21 20 19 36 36 H 1.08997 * 117.50141 * 145.01931 * 21 20 19 37 37 H 1.09000 * 117.49410 * 252.50756 * 22 21 20 38 38 H 1.08998 * 117.50127 * 107.49399 * 22 21 20 39 39 H 1.07999 * 119.54805 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3409 2.6320 -0.4327 16 6 0.0432 3.3264 -2.6332 17 6 -1.2167 3.9102 -2.7461 18 6 -1.5689 4.5261 -3.9366 19 6 -0.6488 4.5363 -4.9734 20 6 -0.9883 5.1949 -6.2856 21 6 -0.0143 4.9962 -7.4487 22 6 -0.0998 6.3525 -6.7457 23 6 0.5866 3.9358 -4.7910 24 7 0.8971 3.3630 -3.6486 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 5.8763 0.4948 2.1200 31 1 2.2721 2.1230 -1.9977 32 1 -1.9091 3.8829 -1.9178 33 1 -2.5382 4.9876 -4.0539 34 1 -2.0507 5.2511 -6.5225 35 1 0.8718 4.3887 -7.2648 36 1 -0.4359 4.9214 -8.4511 37 1 -0.5777 7.1699 -7.2857 38 1 0.7303 6.6376 -6.0994 39 1 1.3060 3.9423 -5.5965 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358076295.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:58 Heat of formation + Delta-G solvation = 2.866593 kcal Electronic energy + Delta-G solvation = -20628.483551 eV Core-core repulsion = 17536.019655 eV Total energy + Delta-G solvation = -3092.463896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77079 -40.37380 -37.99983 -37.12607 -34.48531 -33.74959 -33.09489 -31.83822 -29.48455 -26.29177 -24.93402 -24.55517 -23.12699 -22.87153 -21.66260 -21.28725 -19.74582 -18.30854 -17.99108 -17.45016 -16.68521 -16.35291 -16.33467 -15.77002 -15.64542 -15.27156 -14.94740 -14.76625 -14.32500 -14.00383 -13.75687 -13.70523 -13.59077 -12.98751 -12.78644 -12.71389 -12.42752 -12.31261 -11.99022 -11.87071 -11.46592 -11.30775 -11.27167 -11.10618 -10.87372 -10.78937 -10.46892 -9.93524 -9.70261 -8.39179 -6.45772 -0.40250 0.23688 1.26957 1.34524 1.45214 1.74351 2.25448 2.30516 2.73613 2.95934 3.11560 3.16391 3.56068 3.77805 3.89557 3.92811 4.03640 4.15322 4.20697 4.29225 4.33657 4.35452 4.44063 4.71238 4.78112 4.87717 4.96903 4.98723 5.06384 5.08545 5.10976 5.20433 5.29136 5.30158 5.37401 5.48409 5.57659 5.60754 6.10538 6.54648 6.64370 6.90706 7.15324 7.33698 8.76364 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031552 B = 0.004064 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.204623 B = 6888.544235 C = 7435.745233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C 0.248 3.752 4 H 0.028 0.972 5 C -0.538 4.538 6 H 0.050 0.950 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.939 3.061 10 H -0.257 1.257 11 H -0.290 1.290 12 H -0.258 1.258 13 N -0.682 5.682 14 C 0.555 3.445 15 O -0.570 6.570 16 C 0.050 3.950 17 C -0.111 4.111 18 C -0.072 4.072 19 C -0.075 4.075 20 C -0.126 4.126 21 C -0.171 4.171 22 C -0.164 4.164 23 C 0.085 3.915 24 N -0.476 5.476 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.271 0.729 31 H 0.408 0.592 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 8.149 -17.654 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.143 3.857 4 H 0.045 0.955 5 C -0.576 4.576 6 H 0.069 0.931 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.766 3.234 10 H -0.182 1.182 11 H -0.218 1.218 12 H -0.182 1.182 13 N -0.330 5.330 14 C 0.341 3.659 15 O -0.450 6.450 16 C -0.087 4.087 17 C -0.132 4.132 18 C -0.097 4.097 19 C -0.077 4.077 20 C -0.144 4.144 21 C -0.208 4.208 22 C -0.201 4.201 23 C -0.075 4.075 24 N -0.187 5.187 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.244 0.756 32 H 0.167 0.833 33 H 0.195 0.805 34 H 0.156 0.844 35 H 0.116 0.884 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.106 0.894 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.355 7.652 -16.711 23.950 hybrid contribution -0.130 -0.071 0.602 0.620 sum -15.485 7.581 -16.109 23.596 Atomic orbital electron populations 1.21763 0.95021 1.00786 1.01551 1.22201 0.96036 0.98161 1.01118 1.18898 0.93428 0.89906 0.83445 0.95468 1.21264 0.90280 1.39110 1.06958 0.93145 1.25589 0.95871 0.95711 0.99851 1.69984 1.10381 1.46062 1.30793 0.85986 0.79333 0.80018 0.78074 1.18250 1.21756 1.18197 1.45945 1.15382 1.54477 1.17182 1.18344 0.82137 0.78531 0.86878 1.90704 1.52374 1.61539 1.40419 1.21059 0.93323 1.01092 0.93240 1.22230 0.95587 0.95543 0.99883 1.21767 1.01165 0.96326 0.90489 1.20665 0.94235 0.96509 0.96275 1.21066 0.99316 1.03315 0.90728 1.23208 1.00977 0.99641 0.96953 1.23127 1.01491 0.92343 1.03090 1.23125 0.96354 0.93941 0.94069 1.67527 1.34498 1.15965 1.00675 0.93904 0.93274 0.91919 0.91633 0.93295 0.91963 0.75645 0.83312 0.80507 0.84441 0.88355 0.86417 0.86439 0.89386 0.80408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.51 71.98 0.61 -4.76 16 2 C -0.14 -6.19 5.11 30.59 0.16 -6.04 16 3 C 0.25 12.43 1.83 44.25 0.08 12.52 16 4 H 0.03 1.50 6.63 -2.39 -0.02 1.48 16 5 C -0.54 -30.97 9.31 25.60 0.24 -30.73 16 6 H 0.05 3.13 7.98 -2.91 -0.02 3.11 16 7 C 0.03 1.72 5.45 84.66 0.46 2.18 16 8 N -0.93 -57.51 13.96 21.45 0.30 -57.21 16 9 Si 0.94 45.65 24.41 68.60 1.67 47.33 16 10 H -0.26 -11.68 6.84 99.48 0.68 -11.00 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.26 -12.35 6.52 99.48 0.65 -11.71 16 13 N -0.68 -30.40 5.01 -448.69 -2.25 -32.65 16 14 C 0.56 23.05 6.38 86.88 0.55 23.60 16 15 O -0.57 -25.78 13.46 -3.76 -0.05 -25.83 16 16 C 0.05 1.67 6.75 41.91 0.28 1.95 16 17 C -0.11 -2.95 9.63 22.61 0.22 -2.73 16 18 C -0.07 -1.33 9.88 22.45 0.22 -1.11 16 19 C -0.07 -1.34 5.63 -19.70 -0.11 -1.45 16 20 C -0.13 -1.40 6.06 -11.54 -0.07 -1.47 16 21 C -0.17 -1.60 9.87 30.60 0.30 -1.30 16 22 C -0.16 -1.61 10.17 30.60 0.31 -1.30 16 23 C 0.09 1.95 10.47 84.82 0.89 2.84 16 24 N -0.48 -14.86 9.54 -184.91 -1.76 -16.63 16 25 H 0.04 1.79 7.84 -2.39 -0.02 1.78 16 26 H 0.05 1.98 5.64 -2.39 -0.01 1.96 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.05 2.27 3.24 -2.39 -0.01 2.26 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.41 17.54 7.87 -92.71 -0.73 16.81 16 32 H 0.15 3.83 7.64 -2.91 -0.02 3.81 16 33 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 0.99 6.20 -2.39 -0.01 0.98 16 36 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.18 3.15 6.03 -2.91 -0.02 3.13 16 Total: -1.00 -70.50 316.18 2.32 -68.18 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.26 Total: 24.61 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 4.15 Total: -7.79 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.71 Total: -106.49 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.67 Total: 47.33 kcal Total: -70.50 2.32 -68.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076295.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.043 kcal (2) G-P(sol) polarization free energy of solvation -70.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds