Wall clock time and date at job start Mon Mar 30 2020 01:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00213 * 2 1 4 4 N 1.46498 * 109.46843 * 124.99771 * 3 2 1 5 5 C 1.35541 * 125.68106 * 257.77795 * 4 3 2 6 6 C 1.35447 * 108.87455 * 180.13945 * 5 4 3 7 7 C 1.39839 * 107.86323 * 359.60689 * 6 5 4 8 8 C 1.37650 * 125.67819 * 77.47914 * 4 3 2 9 9 C 1.46675 * 126.23295 * 0.02562 * 8 4 3 10 10 O 1.21699 * 120.00199 * 175.92330 * 9 8 4 11 11 N 1.34776 * 120.00286 * 355.91816 * 9 8 4 12 12 C 1.46497 * 120.00594 * 185.23812 * 11 9 8 13 13 C 1.52991 * 109.47458 * 184.43742 * 12 11 9 14 14 C 1.50699 * 115.54797 * 302.52405 * 13 12 11 15 15 H 1.08005 * 120.00342 * 144.15512 * 14 13 12 16 16 C 1.37878 * 120.00022 * 324.15645 * 14 13 12 17 17 N 1.31508 * 120.00316 * 2.34675 * 16 14 13 18 18 Si 1.86807 * 120.00133 * 182.35319 * 16 14 13 19 19 H 1.48499 * 109.46957 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47221 * 119.99687 * 18 16 14 21 21 H 1.48501 * 109.46950 * 239.99967 * 18 16 14 22 22 C 1.52999 * 117.50156 * 156.85919 * 13 12 11 23 23 C 1.52996 * 117.50304 * 88.19506 * 13 12 11 24 24 H 1.07998 * 119.99931 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99628 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99909 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.46984 * 5.00321 * 3 2 1 28 28 H 1.08996 * 109.47027 * 244.99882 * 3 2 1 29 29 H 1.08001 * 125.56016 * 0.03430 * 5 4 3 30 30 H 1.08001 * 126.06836 * 179.87064 * 6 5 4 31 31 H 1.08002 * 126.45610 * 180.23768 * 7 6 5 32 32 H 0.97006 * 119.99508 * 5.23803 * 11 9 8 33 33 H 1.09004 * 109.46913 * 304.43561 * 12 11 9 34 34 H 1.09002 * 109.47260 * 64.42969 * 12 11 9 35 35 H 0.96999 * 120.01217 * 185.00294 * 17 16 14 36 36 H 1.09004 * 117.49703 * 359.97438 * 22 13 12 37 37 H 1.09000 * 117.50115 * 145.01733 * 22 13 12 38 38 H 1.09000 * 117.50254 * 214.98160 * 23 13 12 39 39 H 1.09006 * 117.49874 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.8037 1.9995 2.2956 6 6 3.8745 1.7933 3.0989 7 6 4.7665 0.9584 2.4187 8 6 4.2037 0.6782 1.1916 9 6 4.7879 -0.1629 0.1416 10 8 5.9029 -0.6288 0.2851 11 7 4.0898 -0.4199 -0.9823 12 6 4.6235 -1.3510 -1.9794 13 6 3.6982 -1.3794 -3.1975 14 6 2.2664 -1.7567 -2.9174 15 1 1.4662 -1.2893 -3.4722 16 6 1.9777 -2.6986 -1.9527 17 7 2.9483 -3.2339 -1.2451 18 14 0.2078 -3.2144 -1.6509 19 1 -0.6886 -2.4694 -2.5710 20 1 0.0685 -4.6724 -1.8960 21 1 -0.1634 -2.9109 -0.2454 22 6 4.2992 -1.8287 -4.5309 23 6 3.9551 -0.3545 -4.3040 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4025 -0.9313 29 1 1.9401 2.5996 2.5416 30 1 4.0128 2.1980 4.0906 31 1 5.7173 0.6005 2.7854 32 1 3.2339 0.0118 -1.1309 33 1 5.6175 -1.0249 -2.2858 34 1 4.6860 -2.3497 -1.5472 35 1 2.7545 -3.9480 -0.6178 36 1 5.3539 -2.1037 -4.5404 37 1 3.6588 -2.3968 -5.2056 38 1 3.0886 0.0467 -4.8295 39 1 4.7832 0.3404 -4.1639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435233891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:47 Heat of formation + Delta-G solvation = 73.382657 kcal Electronic energy + Delta-G solvation = -22068.724473 eV Core-core repulsion = 18979.318383 eV Total energy + Delta-G solvation = -3089.406090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11342 -38.31736 -36.67856 -35.28122 -32.89452 -32.33544 -31.02050 -29.08318 -26.06125 -25.98595 -25.33539 -21.69586 -21.22885 -20.45918 -20.02568 -19.36352 -18.71245 -17.56035 -16.33323 -15.46087 -15.26513 -14.84163 -14.70086 -14.60568 -14.05445 -13.58363 -13.45769 -13.03178 -12.90773 -12.47363 -12.19027 -12.01381 -11.82111 -11.69420 -11.38745 -11.07081 -10.97604 -10.79037 -10.57153 -10.33103 -9.79658 -9.33502 -9.26307 -9.01122 -8.93094 -8.47730 -8.36966 -8.06794 -7.72009 -6.08564 -4.29764 1.94714 2.29553 3.06333 3.09001 3.20314 3.21514 3.24486 4.03472 4.16312 4.22353 4.72328 4.86507 4.96795 5.09905 5.28250 5.38554 5.53508 5.64117 5.73809 5.86675 5.96875 6.13463 6.24983 6.42712 6.47619 6.48920 6.56350 6.67983 6.80510 6.84985 6.93293 7.01454 7.11321 7.20115 7.30067 7.48633 7.50727 7.58798 7.93680 8.23030 8.50752 8.74019 9.10461 9.33760 10.79180 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.008499 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.573639 B = 3293.752833 C = 4174.327823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.173 4.173 3 C 0.120 3.880 4 N -0.422 5.422 5 C 0.006 3.994 6 C -0.213 4.213 7 C -0.126 4.126 8 C -0.035 4.035 9 C 0.573 3.427 10 O -0.553 6.553 11 N -0.693 5.693 12 C 0.155 3.845 13 C 0.033 3.967 14 C -0.491 4.491 15 H 0.062 0.938 16 C 0.077 3.923 17 N -0.868 5.868 18 Si 0.877 3.123 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.277 1.277 22 C -0.195 4.195 23 C -0.214 4.214 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.142 0.858 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.162 0.838 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.398 0.602 33 H 0.024 0.976 34 H 0.122 0.878 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 8.986 4.123 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.191 4.191 3 C -0.001 4.001 4 N -0.098 5.098 5 C -0.128 4.128 6 C -0.238 4.238 7 C -0.152 4.152 8 C -0.148 4.148 9 C 0.359 3.641 10 O -0.433 6.433 11 N -0.345 5.345 12 C 0.032 3.968 13 C 0.032 3.968 14 C -0.528 4.528 15 H 0.080 0.920 16 C -0.126 4.126 17 N -0.504 5.504 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.203 1.203 22 C -0.233 4.233 23 C -0.251 4.251 24 H 0.121 0.879 25 H 0.114 0.886 26 H 0.159 0.841 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.179 0.821 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.238 0.762 33 H 0.042 0.958 34 H 0.139 0.861 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.439 8.505 4.052 10.029 hybrid contribution -1.478 -0.233 -0.102 1.500 sum -4.917 8.272 3.950 10.402 Atomic orbital electron populations 1.23901 0.95671 1.01984 0.99767 1.23446 0.96710 0.98812 1.00142 1.21216 0.92212 0.98004 0.88703 1.44228 1.15019 1.36981 1.13532 1.21856 1.01525 1.02753 0.86653 1.20753 0.95933 1.06257 1.00827 1.21205 1.00485 1.00838 0.92683 1.20877 0.88867 1.05689 0.99349 1.17036 0.85302 0.80458 0.81289 1.90748 1.19153 1.53872 1.79510 1.46284 1.23577 1.45276 1.19389 1.21286 0.92080 0.95781 0.87610 1.19261 0.95415 0.96301 0.85785 1.20544 0.89588 1.23441 1.19261 0.92020 1.24943 0.96819 0.96095 0.94791 1.69801 1.30826 1.25014 1.24788 0.86853 0.85459 0.78926 0.78290 1.19356 1.20988 1.20292 1.22925 0.99332 0.96136 1.04925 1.22965 1.01611 0.91985 1.08583 0.87936 0.88620 0.84072 0.88152 0.88014 0.82062 0.84433 0.83897 0.76169 0.95755 0.86072 0.92538 0.91358 0.90129 0.90603 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 13.82 29.02 0.40 -2.24 16 2 C -0.17 -2.93 8.46 -36.02 -0.30 -3.23 16 3 C 0.12 1.74 5.74 -5.19 -0.03 1.71 16 4 N -0.42 -6.78 2.76 -114.16 -0.32 -7.10 16 5 C 0.01 0.09 11.35 -16.91 -0.19 -0.11 16 6 C -0.21 -3.06 10.81 -39.98 -0.43 -3.49 16 7 C -0.13 -2.20 10.66 -39.12 -0.42 -2.62 16 8 C -0.04 -0.68 6.84 -81.98 -0.56 -1.24 16 9 C 0.57 12.92 7.77 -12.85 -0.10 12.82 16 10 O -0.55 -14.05 16.87 5.19 0.09 -13.96 16 11 N -0.69 -15.23 4.76 -61.62 -0.29 -15.52 16 12 C 0.16 3.69 4.66 -4.05 -0.02 3.67 16 13 C 0.03 0.76 2.01 -155.67 -0.31 0.45 16 14 C -0.49 -11.86 8.44 -34.44 -0.29 -12.15 16 15 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 16 C 0.08 1.88 4.25 -17.82 -0.08 1.80 16 17 N -0.87 -22.26 10.29 55.43 0.57 -21.69 16 18 Si 0.88 19.08 27.58 -169.99 -4.69 14.39 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -5.82 6.19 56.52 0.35 -5.47 16 22 C -0.19 -4.17 9.96 -26.69 -0.27 -4.43 16 23 C -0.21 -4.37 9.94 -26.69 -0.27 -4.64 16 24 H 0.10 1.67 5.76 -52.49 -0.30 1.37 16 25 H 0.10 1.11 7.84 -52.49 -0.41 0.70 16 26 H 0.14 2.97 5.90 -52.48 -0.31 2.66 16 27 H 0.10 1.08 7.75 -51.93 -0.40 0.68 16 28 H 0.10 1.56 6.21 -51.93 -0.32 1.24 16 29 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.40 8.10 2.51 -40.82 -0.10 8.00 16 33 H 0.02 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.12 3.25 5.70 -51.93 -0.30 2.96 16 35 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -28.06 319.99 -7.80 -35.87 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -5.12 Total: 16.89 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.86 Total: -13.70 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.04 Total: -44.30 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.09 Total: -13.96 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.69 Total: 14.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.06 -7.80 -35.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435233891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.248 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds