Wall clock time and date at job start Mon Mar 30 2020 01:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00213 * 2 1 4 4 N 1.46498 * 109.46843 * 124.99771 * 3 2 1 5 5 C 1.35541 * 125.68106 * 257.77795 * 4 3 2 6 6 C 1.35447 * 108.87455 * 180.13945 * 5 4 3 7 7 C 1.39839 * 107.86323 * 359.60689 * 6 5 4 8 8 C 1.37650 * 125.67819 * 77.47914 * 4 3 2 9 9 C 1.46675 * 126.23295 * 0.02562 * 8 4 3 10 10 O 1.21699 * 120.00199 * 175.92330 * 9 8 4 11 11 N 1.34776 * 120.00286 * 355.91816 * 9 8 4 12 12 C 1.46497 * 120.00594 * 185.23812 * 11 9 8 13 13 C 1.52991 * 109.47458 * 184.43742 * 12 11 9 14 14 C 1.50699 * 115.54797 * 302.52405 * 13 12 11 15 15 H 1.08005 * 120.00342 * 144.15512 * 14 13 12 16 16 C 1.37878 * 120.00022 * 324.15645 * 14 13 12 17 17 N 1.31508 * 120.00316 * 2.34675 * 16 14 13 18 18 Si 1.86807 * 120.00133 * 182.35319 * 16 14 13 19 19 H 1.48499 * 109.46957 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47221 * 119.99687 * 18 16 14 21 21 H 1.48501 * 109.46950 * 239.99967 * 18 16 14 22 22 C 1.52999 * 117.50156 * 156.85919 * 13 12 11 23 23 C 1.52996 * 117.50304 * 88.19506 * 13 12 11 24 24 H 1.07998 * 119.99931 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.99628 * 0.02562 * 1 2 3 26 26 H 1.08007 * 119.99909 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.46984 * 5.00321 * 3 2 1 28 28 H 1.08996 * 109.47027 * 244.99882 * 3 2 1 29 29 H 1.08001 * 125.56016 * 0.03430 * 5 4 3 30 30 H 1.08001 * 126.06836 * 179.87064 * 6 5 4 31 31 H 1.08002 * 126.45610 * 180.23768 * 7 6 5 32 32 H 0.97006 * 119.99508 * 5.23803 * 11 9 8 33 33 H 1.09004 * 109.46913 * 304.43561 * 12 11 9 34 34 H 1.09002 * 109.47260 * 64.42969 * 12 11 9 35 35 H 0.96999 * 120.01217 * 185.00294 * 17 16 14 36 36 H 1.09004 * 117.49703 * 359.97438 * 22 13 12 37 37 H 1.09000 * 117.50115 * 145.01733 * 22 13 12 38 38 H 1.09000 * 117.50254 * 214.98160 * 23 13 12 39 39 H 1.09006 * 117.49874 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.8037 1.9995 2.2956 6 6 3.8745 1.7933 3.0989 7 6 4.7665 0.9584 2.4187 8 6 4.2037 0.6782 1.1916 9 6 4.7879 -0.1629 0.1416 10 8 5.9029 -0.6288 0.2851 11 7 4.0898 -0.4199 -0.9823 12 6 4.6235 -1.3510 -1.9794 13 6 3.6982 -1.3794 -3.1975 14 6 2.2664 -1.7567 -2.9174 15 1 1.4662 -1.2893 -3.4722 16 6 1.9777 -2.6986 -1.9527 17 7 2.9483 -3.2339 -1.2451 18 14 0.2078 -3.2144 -1.6509 19 1 -0.6886 -2.4694 -2.5710 20 1 0.0685 -4.6724 -1.8960 21 1 -0.1634 -2.9109 -0.2454 22 6 4.2992 -1.8287 -4.5309 23 6 3.9551 -0.3545 -4.3040 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4025 -0.9313 29 1 1.9401 2.5996 2.5416 30 1 4.0128 2.1980 4.0906 31 1 5.7173 0.6005 2.7854 32 1 3.2339 0.0118 -1.1309 33 1 5.6175 -1.0249 -2.2858 34 1 4.6860 -2.3497 -1.5472 35 1 2.7545 -3.9480 -0.6178 36 1 5.3539 -2.1037 -4.5404 37 1 3.6588 -2.3968 -5.2056 38 1 3.0886 0.0467 -4.8295 39 1 4.7832 0.3404 -4.1639 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435233891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:47 Heat of formation + Delta-G solvation = 57.711899 kcal Electronic energy + Delta-G solvation = -22069.404008 eV Core-core repulsion = 18979.318383 eV Total energy + Delta-G solvation = -3090.085625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.38524 -40.02151 -38.45029 -36.54196 -34.59142 -34.20379 -32.24833 -30.46199 -27.85028 -27.18555 -27.09882 -23.26405 -22.88136 -21.77460 -21.21412 -21.09885 -20.19541 -18.96517 -18.06221 -16.94878 -16.81616 -16.49068 -16.34230 -16.13401 -15.54148 -15.11413 -14.88065 -14.71897 -14.18469 -13.81880 -13.66604 -13.48269 -13.38644 -13.14963 -12.93797 -12.66764 -12.60745 -12.32457 -12.18404 -12.06694 -11.58453 -11.07118 -10.83364 -10.71671 -10.53406 -10.19522 -9.82336 -9.67317 -9.07438 -7.96288 -6.22377 0.56111 1.09357 1.31851 1.40691 1.47937 1.91263 2.05561 2.36137 2.41039 2.59473 3.05611 3.60524 3.66050 3.81188 3.89118 4.19586 4.26313 4.30249 4.49581 4.50670 4.58240 4.63042 4.74248 4.75783 4.91076 4.91809 5.08899 5.18561 5.25464 5.35758 5.49041 5.54063 5.57203 5.75296 5.75483 5.89404 5.97089 6.02333 6.34507 6.40355 6.74583 6.91843 7.40201 7.43700 8.89859 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.008499 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.573639 B = 3293.752833 C = 4174.327823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.199 4.199 3 C 0.122 3.878 4 N -0.421 5.421 5 C 0.035 3.965 6 C -0.218 4.218 7 C -0.132 4.132 8 C -0.084 4.084 9 C 0.565 3.435 10 O -0.600 6.600 11 N -0.686 5.686 12 C 0.165 3.835 13 C 0.006 3.994 14 C -0.492 4.492 15 H 0.062 0.938 16 C 0.048 3.952 17 N -0.894 5.894 18 Si 0.922 3.078 19 H -0.257 1.257 20 H -0.297 1.297 21 H -0.269 1.269 22 C -0.196 4.196 23 C -0.189 4.189 24 H 0.086 0.914 25 H 0.142 0.858 26 H 0.094 0.906 27 H 0.153 0.847 28 H 0.087 0.913 29 H 0.214 0.786 30 H 0.171 0.829 31 H 0.134 0.866 32 H 0.407 0.593 33 H 0.013 0.987 34 H 0.087 0.913 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 11.864 4.723 14.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.218 4.218 3 C 0.002 3.998 4 N -0.096 5.096 5 C -0.100 4.100 6 C -0.241 4.241 7 C -0.160 4.160 8 C -0.196 4.196 9 C 0.354 3.646 10 O -0.484 6.484 11 N -0.339 5.339 12 C 0.041 3.959 13 C 0.005 3.995 14 C -0.529 4.529 15 H 0.080 0.920 16 C -0.153 4.153 17 N -0.531 5.531 18 Si 0.748 3.252 19 H -0.181 1.181 20 H -0.224 1.224 21 H -0.194 1.194 22 C -0.235 4.235 23 C -0.226 4.226 24 H 0.104 0.896 25 H 0.160 0.840 26 H 0.112 0.888 27 H 0.170 0.830 28 H 0.105 0.895 29 H 0.231 0.769 30 H 0.188 0.812 31 H 0.152 0.848 32 H 0.249 0.751 33 H 0.031 0.969 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.228 11.404 4.628 13.793 hybrid contribution -0.649 -1.105 -0.243 1.305 sum -6.877 10.299 4.385 13.137 Atomic orbital electron populations 1.24110 0.94885 1.03351 0.96971 1.23254 0.97448 0.98261 1.02850 1.21342 0.92309 0.98427 0.87733 1.44353 1.13982 1.36513 1.14777 1.22741 1.02160 1.00440 0.84659 1.21141 0.95241 1.05525 1.02229 1.21457 1.00816 1.01056 0.92631 1.20464 0.91498 1.08388 0.99271 1.17606 0.84856 0.80337 0.81835 1.90691 1.21154 1.56044 1.80498 1.46203 1.23812 1.44774 1.19070 1.20963 0.92087 0.94466 0.88380 1.19293 0.95030 0.99030 0.86102 1.20653 0.89994 1.23219 1.19063 0.92030 1.25407 0.99255 0.96079 0.94543 1.69986 1.32349 1.25391 1.25400 0.86158 0.82500 0.77729 0.78802 1.18095 1.22380 1.19411 1.22957 0.99595 0.97260 1.03658 1.22960 1.02181 0.91429 1.06029 0.89610 0.84034 0.88777 0.82958 0.89479 0.76919 0.81178 0.84777 0.75100 0.96858 0.89534 0.93397 0.90873 0.89985 0.89220 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 13.82 67.78 0.94 -3.20 16 2 C -0.20 -6.39 8.46 25.65 0.22 -6.18 16 3 C 0.12 3.19 5.74 85.63 0.49 3.69 16 4 N -0.42 -12.51 2.76 -515.09 -1.42 -13.94 16 5 C 0.03 0.79 11.35 83.47 0.95 1.74 16 6 C -0.22 -5.54 10.81 22.01 0.24 -5.30 16 7 C -0.13 -4.61 10.66 22.57 0.24 -4.36 16 8 C -0.08 -3.29 6.84 40.35 0.28 -3.01 16 9 C 0.56 26.78 7.77 86.45 0.67 27.45 16 10 O -0.60 -32.65 16.87 -4.34 -0.07 -32.72 16 11 N -0.69 -31.39 4.76 -467.09 -2.22 -33.61 16 12 C 0.16 8.22 4.66 86.38 0.40 8.63 16 13 C 0.01 0.28 2.01 -52.93 -0.11 0.18 16 14 C -0.49 -23.82 8.44 25.60 0.22 -23.61 16 15 H 0.06 2.93 7.81 -2.91 -0.02 2.91 16 16 C 0.05 2.39 4.25 84.66 0.36 2.74 16 17 N -0.89 -47.89 10.29 21.45 0.22 -47.67 16 18 Si 0.92 39.20 27.58 68.60 1.89 41.09 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 20 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.27 -10.94 6.19 99.48 0.62 -10.32 16 22 C -0.20 -8.37 9.96 30.62 0.30 -8.07 16 23 C -0.19 -7.50 9.94 30.62 0.30 -7.19 16 24 H 0.09 2.57 5.76 -2.91 -0.02 2.55 16 25 H 0.14 2.42 7.84 -2.91 -0.02 2.40 16 26 H 0.09 4.01 5.90 -2.91 -0.02 3.99 16 27 H 0.15 2.36 7.75 -2.39 -0.02 2.34 16 28 H 0.09 2.53 6.21 -2.39 -0.01 2.52 16 29 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 31 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.41 16.86 2.51 -92.70 -0.23 16.63 16 33 H 0.01 0.67 8.07 -2.38 -0.02 0.65 16 34 H 0.09 4.97 5.70 -2.39 -0.01 4.96 16 35 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 36 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 37 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 Total: -1.00 -65.62 319.99 4.62 -60.99 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: 0.73 Total: 42.35 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 5.50 Total: -16.50 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -3.43 Total: -95.21 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.07 Total: -32.72 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.89 Total: 41.09 kcal Total: -65.62 4.62 -60.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435233891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.703 kcal (2) G-P(sol) polarization free energy of solvation -65.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds