Wall clock time and date at job start Mon Mar 30 2020 01:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50693 * 119.99904 * 2 1 4 4 C 1.31000 * 119.99580 * 180.02562 * 2 1 3 5 5 C 1.50700 * 120.00417 * 359.97438 * 4 2 1 6 6 N 1.46496 * 109.47089 * 124.99878 * 5 4 2 7 7 C 1.34779 * 120.00026 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00022 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99980 * 180.02562 * 7 6 5 10 10 C 1.39953 * 119.99903 * 174.29065 * 9 7 6 11 11 C 1.39278 * 119.94776 * 145.42240 * 10 9 7 12 12 C 1.38489 * 120.43308 * 179.97438 * 11 10 9 13 13 C 1.37683 * 120.31833 * 0.29976 * 12 11 10 14 14 C 1.40741 * 119.88051 * 359.43220 * 13 12 11 15 15 C 1.41414 * 120.20785 * 180.31642 * 14 13 12 16 16 H 1.08000 * 119.99316 * 214.42503 * 15 14 13 17 17 C 1.39928 * 120.00321 * 34.42160 * 15 14 13 18 18 N 1.30833 * 119.99647 * 5.54067 * 17 15 14 19 19 Si 1.86798 * 120.00358 * 185.53839 * 17 15 14 20 20 H 1.48503 * 109.46824 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47266 * 119.99875 * 19 17 15 22 22 H 1.48495 * 109.47228 * 240.00446 * 19 17 15 23 23 C 1.38230 * 119.94722 * 325.39902 * 10 9 7 24 24 H 1.09008 * 109.47157 * 240.00064 * 1 2 3 25 25 H 1.09000 * 109.47067 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47354 * 120.00238 * 1 2 3 27 27 H 1.09004 * 109.46763 * 270.00093 * 3 2 1 28 28 H 1.09002 * 109.47699 * 29.99658 * 3 2 1 29 29 H 1.09000 * 109.47113 * 150.00030 * 3 2 1 30 30 H 1.07999 * 119.99486 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46685 * 5.00106 * 5 4 2 32 32 H 1.08999 * 109.47179 * 245.00623 * 5 4 2 33 33 H 0.97007 * 119.99842 * 0.02562 * 6 5 4 34 34 H 0.97005 * 120.00043 * 354.29167 * 9 7 6 35 35 H 1.08009 * 119.78558 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.84213 * 180.02562 * 12 11 10 37 37 H 1.07995 * 120.05688 * 179.70037 * 13 12 11 38 38 H 0.97001 * 119.99616 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.16114 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4084 -2.4396 -0.0005 6 7 1.8499 -3.2584 -1.1323 7 6 1.3100 -4.4767 -1.3338 8 8 0.4562 -4.8961 -0.5765 9 7 1.7165 -5.2302 -2.3748 10 6 1.2453 -6.5404 -2.5165 11 6 1.0234 -7.0658 -3.7871 12 6 0.5577 -8.3612 -3.9391 13 6 0.3029 -9.1422 -2.8342 14 6 0.5279 -8.6267 -1.5441 15 6 0.2750 -9.4252 -0.4047 16 1 -0.0959 -8.9702 0.5019 17 6 0.5050 -10.8046 -0.4519 18 7 1.0553 -11.3401 -1.5112 19 14 0.0265 -11.8815 0.9975 20 1 -0.5737 -11.0392 2.0631 21 1 -0.9620 -12.8972 0.5544 22 1 1.2343 -12.5641 1.5270 23 6 1.0012 -7.3110 -1.3952 24 1 -0.3634 -0.5139 0.8901 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 2.4421 1.6197 -1.0277 28 1 1.6714 2.0648 0.5138 29 1 3.2129 1.1747 0.5138 30 1 3.2419 -1.1345 -0.0009 31 1 0.3401 -2.2423 -0.0896 32 1 1.6032 -2.9716 0.9307 33 1 2.5314 -2.9239 -1.7362 34 1 2.3358 -4.8644 -3.0257 35 1 1.2157 -6.4591 -4.6597 36 1 0.3893 -8.7591 -4.9289 37 1 -0.0647 -10.1502 -2.9575 38 1 1.2151 -12.2963 -1.5438 39 1 1.1737 -6.9048 -0.4095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455903359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:42 Heat of formation + Delta-G solvation = -1.600398 kcal Electronic energy + Delta-G solvation = -19978.148544 eV Core-core repulsion = 16885.490945 eV Total energy + Delta-G solvation = -3092.657599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.88400 -37.66153 -36.85688 -34.36620 -33.96056 -32.87659 -29.72875 -29.35344 -28.07697 -27.51844 -25.20927 -24.06941 -21.54552 -20.79145 -20.05840 -18.54232 -17.75400 -17.31929 -15.98337 -15.53612 -15.31557 -14.69332 -14.46816 -14.40509 -14.39699 -13.97569 -13.55914 -13.06099 -12.81948 -12.73254 -12.52394 -12.15735 -12.08952 -11.84669 -11.58636 -11.11356 -11.08711 -11.07046 -10.87634 -10.38313 -10.17101 -9.62242 -9.40731 -9.21245 -9.15407 -8.91206 -8.72984 -7.30287 -6.81734 -6.54681 -4.28579 1.75820 2.79440 2.94732 3.16169 3.21241 3.24292 3.26046 3.77928 4.06324 4.50558 4.64572 4.66964 4.78690 5.02422 5.23708 5.26454 5.31862 5.50205 5.58343 5.70604 5.74679 5.75709 5.85514 6.27612 6.36759 6.42440 6.50024 6.71672 6.84664 6.86293 7.09533 7.16398 7.32659 7.41865 7.76822 7.87561 8.03430 8.20231 8.32283 8.50332 8.75315 8.98174 9.05945 9.11092 10.39060 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.003452 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.035163 B = 8108.592523 C = 8878.346107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 C -0.119 4.119 4 C -0.185 4.185 5 C 0.166 3.834 6 N -0.748 5.748 7 C 0.697 3.303 8 O -0.567 6.567 9 N -0.682 5.682 10 C 0.164 3.836 11 C -0.253 4.253 12 C -0.097 4.097 13 C -0.160 4.160 14 C 0.120 3.880 15 C -0.464 4.464 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.812 5.812 19 Si 0.911 3.089 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.276 1.276 23 C -0.200 4.200 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.393 0.607 34 H 0.394 0.606 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.276 0.724 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 18.239 0.045 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.111 4.111 3 C -0.175 4.175 4 C -0.204 4.204 5 C 0.043 3.957 6 N -0.405 5.405 7 C 0.398 3.602 8 O -0.443 6.443 9 N -0.329 5.329 10 C 0.072 3.928 11 C -0.274 4.274 12 C -0.116 4.116 13 C -0.179 4.179 14 C 0.118 3.882 15 C -0.495 4.495 16 H 0.095 0.905 17 C -0.143 4.143 18 N -0.440 5.440 19 Si 0.736 3.264 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.221 4.221 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.778 17.643 0.721 17.875 hybrid contribution 0.674 -0.184 -0.051 0.700 sum 3.452 17.459 0.670 17.809 Atomic orbital electron populations 1.20940 0.92104 1.02410 1.02779 1.21719 0.96066 0.94960 0.98380 1.20882 0.99722 0.94749 1.02174 1.22702 0.99756 0.93277 1.04642 1.20182 0.98302 0.88045 0.89219 1.45107 1.45561 1.17453 1.32374 1.15987 0.81840 0.80234 0.82181 1.90976 1.33887 1.71957 1.47464 1.42584 1.49348 1.13630 1.27315 1.17243 1.00009 0.81148 0.94423 1.20074 1.16051 0.97747 0.93546 1.20480 1.00172 0.93583 0.97374 1.21357 1.04696 1.00092 0.91800 1.17515 0.87371 0.90151 0.93210 1.19556 1.39464 0.91616 0.98821 0.90504 1.25838 0.92889 0.98526 0.97005 1.69795 1.32880 1.13070 1.28211 0.86215 0.78845 0.79720 0.81607 1.18546 1.19956 1.20134 1.21118 1.09161 0.95677 0.96170 0.91022 0.92017 0.91029 0.91270 0.91750 0.91766 0.86790 0.90915 0.91001 0.77425 0.77293 0.89268 0.88964 0.86435 0.91295 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 8.53 36.01 0.31 -0.73 16 2 C -0.11 -0.92 6.05 -101.07 -0.61 -1.53 16 3 C -0.12 -0.75 9.97 36.00 0.36 -0.39 16 4 C -0.19 -1.71 9.22 -36.03 -0.33 -2.05 16 5 C 0.17 2.05 5.91 -5.20 -0.03 2.02 16 6 N -0.75 -10.09 5.55 -66.41 -0.37 -10.45 16 7 C 0.70 13.16 8.28 -86.91 -0.72 12.44 16 8 O -0.57 -13.46 14.13 5.29 0.07 -13.39 16 9 N -0.68 -12.63 5.34 -14.27 -0.08 -12.70 16 10 C 0.16 3.82 6.25 -83.77 -0.52 3.30 16 11 C -0.25 -5.66 9.97 -39.10 -0.39 -6.05 16 12 C -0.10 -2.30 10.02 -39.69 -0.40 -2.70 16 13 C -0.16 -4.28 8.62 -38.84 -0.33 -4.61 16 14 C 0.12 3.40 5.50 -106.85 -0.59 2.81 16 15 C -0.46 -13.11 9.04 -37.74 -0.34 -13.45 16 16 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 17 C 0.07 1.91 5.31 -17.34 -0.09 1.82 16 18 N -0.81 -21.86 10.97 55.55 0.61 -21.25 16 19 Si 0.91 19.81 29.56 -169.99 -5.03 14.79 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.20 -5.34 8.39 -38.69 -0.32 -5.66 16 24 H 0.07 0.61 7.85 -51.92 -0.41 0.20 16 25 H 0.06 0.42 7.94 -51.93 -0.41 0.00 16 26 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.36 8.05 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 8.06 -51.93 -0.42 -0.04 16 30 H 0.11 0.93 8.04 -52.49 -0.42 0.50 16 31 H 0.07 0.95 5.79 -51.93 -0.30 0.65 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.39 4.00 8.49 -40.82 -0.35 3.65 16 34 H 0.39 5.60 8.84 -40.82 -0.36 5.24 16 35 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.12 3.24 6.48 -52.49 -0.34 2.90 16 38 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 39 H 0.11 2.98 6.51 -52.49 -0.34 2.63 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -32.33 330.18 -9.23 -41.56 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.40 Total: 11.26 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -4.02 Total: -14.80 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.16 Total: -44.40 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.07 Total: -13.39 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.33 -9.23 -41.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455903359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.963 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds