Wall clock time and date at job start Mon Mar 30 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50693 * 119.99904 * 2 1 4 4 C 1.31000 * 119.99580 * 180.02562 * 2 1 3 5 5 C 1.50700 * 120.00417 * 359.97438 * 4 2 1 6 6 N 1.46496 * 109.47089 * 124.99878 * 5 4 2 7 7 C 1.34779 * 120.00026 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00022 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99980 * 180.02562 * 7 6 5 10 10 C 1.39953 * 119.99903 * 174.29065 * 9 7 6 11 11 C 1.39278 * 119.94776 * 145.42240 * 10 9 7 12 12 C 1.38489 * 120.43308 * 179.97438 * 11 10 9 13 13 C 1.37683 * 120.31833 * 0.29976 * 12 11 10 14 14 C 1.40741 * 119.88051 * 359.43220 * 13 12 11 15 15 C 1.41414 * 120.20785 * 180.31642 * 14 13 12 16 16 H 1.08000 * 119.99316 * 214.42503 * 15 14 13 17 17 C 1.39928 * 120.00321 * 34.42160 * 15 14 13 18 18 N 1.30833 * 119.99647 * 5.54067 * 17 15 14 19 19 Si 1.86798 * 120.00358 * 185.53839 * 17 15 14 20 20 H 1.48503 * 109.46824 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47266 * 119.99875 * 19 17 15 22 22 H 1.48495 * 109.47228 * 240.00446 * 19 17 15 23 23 C 1.38230 * 119.94722 * 325.39902 * 10 9 7 24 24 H 1.09008 * 109.47157 * 240.00064 * 1 2 3 25 25 H 1.09000 * 109.47067 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47354 * 120.00238 * 1 2 3 27 27 H 1.09004 * 109.46763 * 270.00093 * 3 2 1 28 28 H 1.09002 * 109.47699 * 29.99658 * 3 2 1 29 29 H 1.09000 * 109.47113 * 150.00030 * 3 2 1 30 30 H 1.07999 * 119.99486 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.46685 * 5.00106 * 5 4 2 32 32 H 1.08999 * 109.47179 * 245.00623 * 5 4 2 33 33 H 0.97007 * 119.99842 * 0.02562 * 6 5 4 34 34 H 0.97005 * 120.00043 * 354.29167 * 9 7 6 35 35 H 1.08009 * 119.78558 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.84213 * 180.02562 * 12 11 10 37 37 H 1.07995 * 120.05688 * 179.70037 * 13 12 11 38 38 H 0.97001 * 119.99616 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.16114 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4084 -2.4396 -0.0005 6 7 1.8499 -3.2584 -1.1323 7 6 1.3100 -4.4767 -1.3338 8 8 0.4562 -4.8961 -0.5765 9 7 1.7165 -5.2302 -2.3748 10 6 1.2453 -6.5404 -2.5165 11 6 1.0234 -7.0658 -3.7871 12 6 0.5577 -8.3612 -3.9391 13 6 0.3029 -9.1422 -2.8342 14 6 0.5279 -8.6267 -1.5441 15 6 0.2750 -9.4252 -0.4047 16 1 -0.0959 -8.9702 0.5019 17 6 0.5050 -10.8046 -0.4519 18 7 1.0553 -11.3401 -1.5112 19 14 0.0265 -11.8815 0.9975 20 1 -0.5737 -11.0392 2.0631 21 1 -0.9620 -12.8972 0.5544 22 1 1.2343 -12.5641 1.5270 23 6 1.0012 -7.3110 -1.3952 24 1 -0.3634 -0.5139 0.8901 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 2.4421 1.6197 -1.0277 28 1 1.6714 2.0648 0.5138 29 1 3.2129 1.1747 0.5138 30 1 3.2419 -1.1345 -0.0009 31 1 0.3401 -2.2423 -0.0896 32 1 1.6032 -2.9716 0.9307 33 1 2.5314 -2.9239 -1.7362 34 1 2.3358 -4.8644 -3.0257 35 1 1.2157 -6.4591 -4.6597 36 1 0.3893 -8.7591 -4.9289 37 1 -0.0647 -10.1502 -2.9575 38 1 1.2151 -12.2963 -1.5438 39 1 1.1737 -6.9048 -0.4095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455903359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:41 Heat of formation + Delta-G solvation = -22.255796 kcal Electronic energy + Delta-G solvation = -19979.044230 eV Core-core repulsion = 16885.490945 eV Total energy + Delta-G solvation = -3093.553285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44117 -39.26611 -37.95968 -36.14378 -35.26061 -34.68905 -31.71508 -30.58851 -29.10741 -28.59742 -27.22033 -25.07481 -23.21144 -22.68514 -21.68003 -19.77236 -19.52037 -18.44729 -17.58687 -17.08455 -16.73084 -16.44939 -16.07799 -15.64589 -15.60520 -14.92752 -14.81651 -14.63088 -14.42812 -13.98591 -13.66903 -13.48566 -13.26093 -12.96600 -12.87288 -12.83068 -12.76308 -12.46866 -12.17089 -12.02632 -11.82353 -11.51333 -11.23864 -11.09270 -10.77520 -10.21536 -9.71453 -9.30201 -8.70119 -8.50394 -6.38841 0.90500 0.98270 1.05218 1.36685 1.47093 1.52220 1.88776 2.18269 2.24258 2.80441 3.37353 3.71440 3.77642 4.01334 4.29826 4.41728 4.47842 4.61292 4.62792 4.67883 4.82642 4.92523 4.96790 5.04851 5.10104 5.11671 5.14886 5.17090 5.20706 5.34340 5.41933 5.67686 5.73951 5.84451 5.91917 6.05683 6.12908 6.19874 6.39276 6.71037 6.96884 7.02018 7.11419 7.59509 8.43175 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.003452 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.035163 B = 8108.592523 C = 8878.346107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.118 4.118 4 C -0.194 4.194 5 C 0.165 3.835 6 N -0.722 5.722 7 C 0.693 3.307 8 O -0.621 6.621 9 N -0.670 5.670 10 C 0.171 3.829 11 C -0.239 4.239 12 C -0.094 4.094 13 C -0.184 4.184 14 C 0.089 3.911 15 C -0.508 4.508 16 H 0.059 0.941 17 C 0.033 3.967 18 N -0.838 5.838 19 Si 0.984 3.016 20 H -0.267 1.267 21 H -0.259 1.259 22 H -0.263 1.263 23 C -0.226 4.226 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.413 0.587 34 H 0.418 0.582 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.286 0.714 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 20.003 -1.210 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.100 4.100 3 C -0.174 4.174 4 C -0.213 4.213 5 C 0.042 3.958 6 N -0.379 5.379 7 C 0.393 3.607 8 O -0.500 6.500 9 N -0.319 5.319 10 C 0.077 3.923 11 C -0.260 4.260 12 C -0.113 4.113 13 C -0.204 4.204 14 C 0.086 3.914 15 C -0.539 4.539 16 H 0.077 0.923 17 C -0.179 4.179 18 N -0.466 5.466 19 Si 0.805 3.195 20 H -0.191 1.191 21 H -0.184 1.184 22 H -0.188 1.188 23 C -0.248 4.248 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.250 0.750 34 H 0.256 0.744 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.848 19.483 -0.582 19.868 hybrid contribution 0.372 -0.534 0.256 0.699 sum 4.220 18.949 -0.326 19.416 Atomic orbital electron populations 1.20991 0.92383 1.03350 1.02021 1.21987 0.96127 0.95735 0.96160 1.20930 0.99890 0.93523 1.03106 1.22539 1.00266 0.91646 1.06810 1.20231 0.98453 0.89223 0.87886 1.44921 1.44846 1.15507 1.32645 1.16235 0.81517 0.81392 0.81557 1.90953 1.36439 1.73455 1.49201 1.42325 1.49558 1.11965 1.28002 1.17305 0.98507 0.82605 0.93878 1.20518 1.13533 0.97504 0.94448 1.20869 0.98654 0.93821 0.97928 1.21306 1.06612 1.00119 0.92392 1.17836 0.88387 0.91074 0.94091 1.19694 1.42152 0.93303 0.98717 0.92260 1.26646 0.92178 0.99033 1.00047 1.69837 1.33027 1.13903 1.29818 0.85134 0.79035 0.77646 0.77666 1.19105 1.18378 1.18785 1.21049 1.11257 0.96091 0.96422 0.91683 0.90244 0.91965 0.90182 0.90763 0.91013 0.85131 0.91867 0.92829 0.75001 0.74381 0.84698 0.85544 0.88010 0.90363 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.53 71.24 0.61 -1.38 16 2 C -0.10 -1.45 6.05 -16.49 -0.10 -1.55 16 3 C -0.12 -1.13 9.97 71.23 0.71 -0.42 16 4 C -0.19 -3.25 9.22 25.65 0.24 -3.02 16 5 C 0.17 4.05 5.91 85.63 0.51 4.56 16 6 N -0.72 -18.70 5.55 -482.29 -2.68 -21.38 16 7 C 0.69 26.07 8.28 179.05 1.48 27.56 16 8 O -0.62 -30.63 14.13 -3.99 -0.06 -30.69 16 9 N -0.67 -23.86 5.34 -317.33 -1.70 -25.55 16 10 C 0.17 7.89 6.25 38.09 0.24 8.12 16 11 C -0.24 -10.09 9.97 22.58 0.23 -9.87 16 12 C -0.09 -4.33 10.02 22.20 0.22 -4.11 16 13 C -0.18 -10.12 8.62 22.75 0.20 -9.92 16 14 C 0.09 5.25 5.50 -21.31 -0.12 5.13 16 15 C -0.51 -30.45 9.04 23.46 0.21 -30.24 16 16 H 0.06 3.60 7.85 -2.91 -0.02 3.57 16 17 C 0.03 1.81 5.31 85.25 0.45 2.27 16 18 N -0.84 -46.23 10.97 21.82 0.24 -45.99 16 19 Si 0.98 41.70 29.56 68.60 2.03 43.73 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 23 C -0.23 -12.63 8.39 22.85 0.19 -12.43 16 24 H 0.06 1.08 7.85 -2.38 -0.02 1.06 16 25 H 0.08 0.91 7.94 -2.39 -0.02 0.89 16 26 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 27 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.07 0.60 8.05 -2.39 -0.02 0.58 16 29 H 0.07 0.62 8.06 -2.39 -0.02 0.60 16 30 H 0.13 1.78 8.04 -2.91 -0.02 1.75 16 31 H 0.06 1.68 5.79 -2.38 -0.01 1.67 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.41 7.38 8.49 -92.70 -0.79 6.60 16 34 H 0.42 10.61 8.84 -92.70 -0.82 9.79 16 35 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.10 5.81 6.48 -2.91 -0.02 5.79 16 38 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 39 H 0.08 4.89 6.51 -2.91 -0.02 4.87 16 Total: -1.00 -74.58 330.18 2.37 -72.21 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.53 Total: 32.96 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 5.06 Total: -25.30 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -4.13 Total: -92.91 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.06 Total: -30.69 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -74.58 2.37 -72.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455903359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.954 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds