Wall clock time and date at job start Mon Mar 30 2020 01:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47389 * 2 1 4 4 N 1.46498 * 109.47348 * 120.00642 * 2 1 3 5 5 C 1.46496 * 120.00043 * 124.56941 * 4 2 1 6 6 C 1.50708 * 109.47169 * 269.99971 * 5 4 2 7 7 H 1.07999 * 119.99579 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00196 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00250 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99833 * 359.97438 * 8 6 5 11 11 H 1.48511 * 109.47199 * 90.00256 * 10 8 6 12 12 H 1.48504 * 109.47266 * 209.99630 * 10 8 6 13 13 H 1.48499 * 109.47582 * 329.99877 * 10 8 6 14 14 C 1.34770 * 119.99874 * 304.56691 * 4 2 1 15 15 O 1.21667 * 120.00271 * 354.55010 * 14 4 2 16 16 C 1.46653 * 120.00072 * 174.54574 * 14 4 2 17 17 C 1.34636 * 119.99968 * 184.98122 * 16 14 4 18 18 C 1.47408 * 119.99854 * 180.02562 * 17 16 14 19 19 C 1.40141 * 120.94832 * 359.71377 * 18 17 16 20 20 C 1.37997 * 118.96409 * 179.75552 * 19 18 17 21 21 N 1.31888 * 120.92639 * 0.53560 * 20 19 18 22 22 C 1.31877 * 122.11330 * 359.74107 * 21 20 19 23 23 C 1.38001 * 120.92484 * 359.97175 * 22 21 20 24 24 H 1.09003 * 109.46814 * 295.13886 * 1 2 3 25 25 H 1.08999 * 109.47333 * 55.13285 * 1 2 3 26 26 H 1.08996 * 109.47193 * 175.13677 * 1 2 3 27 27 H 1.09005 * 109.46981 * 240.00941 * 2 1 3 28 28 H 1.08991 * 109.47446 * 184.94094 * 3 2 1 29 29 H 1.08998 * 109.47208 * 304.95080 * 3 2 1 30 30 H 1.09003 * 109.46641 * 64.94358 * 3 2 1 31 31 H 1.08999 * 109.47169 * 29.99739 * 5 4 2 32 32 H 1.08998 * 109.47336 * 149.99902 * 5 4 2 33 33 H 0.96999 * 120.00529 * 180.02562 * 9 8 6 34 34 H 1.07998 * 120.00260 * 4.97677 * 16 14 4 35 35 H 1.07996 * 120.00235 * 359.97438 * 17 16 14 36 36 H 1.08004 * 120.51587 * 0.02562 * 19 18 17 37 37 H 1.08005 * 119.53887 * 180.27247 * 20 19 18 38 38 H 1.08005 * 119.53836 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.51406 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9412 -1.8207 1.0638 6 6 2.1546 -3.1015 0.9531 7 1 1.0752 -3.0760 0.9782 8 6 2.8129 -4.3054 0.8186 9 7 2.1265 -5.4230 0.7214 10 14 4.6799 -4.3490 0.7729 11 1 5.2054 -4.4994 2.1538 12 1 5.1281 -5.4975 -0.0550 13 1 5.1904 -3.0851 0.1839 14 6 1.6187 -0.2865 2.4180 15 8 0.9326 0.7115 2.5345 16 6 2.0106 -1.0497 3.6074 17 6 1.5299 -0.7052 4.8169 18 6 1.9243 -1.4720 6.0125 19 6 2.7937 -2.5666 5.9122 20 6 3.1398 -3.2522 7.0587 21 7 2.6566 -2.8966 8.2332 22 6 1.8317 -1.8771 8.3723 23 6 1.4361 -1.1309 7.2809 24 1 -0.3633 0.4366 0.9304 25 1 -0.3634 0.5875 -0.8432 26 1 -0.3633 -1.0239 -0.0871 27 1 1.8933 -0.5137 -0.8901 28 1 3.1264 1.4438 -0.0885 29 1 1.6062 1.9813 -0.8423 30 1 1.7508 1.9301 0.9310 31 1 3.5501 -1.6898 0.1693 32 1 3.5879 -1.8662 1.9401 33 1 2.5896 -6.2700 0.6272 34 1 2.6848 -1.8881 3.5131 35 1 0.8560 0.1334 4.9113 36 1 3.1900 -2.8661 4.9532 37 1 3.8127 -4.0945 6.9927 38 1 1.4614 -1.6219 9.3543 39 1 0.7606 -0.2970 7.4025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491363987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:21 Heat of formation + Delta-G solvation = 16.205698 kcal Electronic energy + Delta-G solvation = -20841.869532 eV Core-core repulsion = 17749.984062 eV Total energy + Delta-G solvation = -3091.885469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04056 -39.47657 -35.73342 -34.57382 -33.15971 -31.87397 -31.21991 -30.05141 -27.67098 -26.71391 -24.85254 -23.41740 -22.63143 -21.99355 -20.08383 -18.08371 -17.13591 -16.98234 -16.31422 -15.79722 -15.55663 -15.18798 -14.62106 -14.03082 -13.95892 -13.81090 -13.49677 -13.31066 -12.98438 -12.78530 -12.61517 -12.24697 -12.01716 -11.73517 -11.51639 -11.19740 -11.06905 -10.92033 -10.82143 -10.68660 -10.37207 -10.29190 -9.66692 -9.47896 -9.12784 -9.04322 -8.78846 -8.53789 -7.79437 -6.27392 -4.29692 0.65696 1.19609 2.25710 3.10423 3.19807 3.21528 3.64464 3.81508 4.05506 4.19821 4.48634 4.66974 4.80430 5.02200 5.09655 5.17107 5.28641 5.42845 5.57795 5.60205 5.68314 5.76255 5.85898 6.02221 6.03974 6.09364 6.10809 6.23825 6.38371 6.42214 6.49972 6.54812 6.69831 6.70475 6.76979 6.81878 7.33274 7.38747 8.00423 8.05148 8.34619 8.76548 8.84205 9.31086 10.85114 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.006742 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.243563 B = 4151.856711 C = 5885.112382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 C -0.166 4.166 4 N -0.578 5.578 5 C 0.206 3.794 6 C -0.541 4.541 7 H 0.079 0.921 8 C 0.077 3.923 9 N -0.888 5.888 10 Si 0.867 3.133 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.264 1.264 14 C 0.547 3.453 15 O -0.564 6.564 16 C -0.148 4.148 17 C -0.074 4.074 18 C -0.010 4.010 19 C -0.159 4.159 20 C 0.100 3.900 21 N -0.492 5.492 22 C 0.093 3.907 23 C -0.162 4.162 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.029 0.971 33 H 0.267 0.733 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 8.391 6.963 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 C -0.224 4.224 4 N -0.307 5.307 5 C 0.084 3.916 6 C -0.579 4.579 7 H 0.097 0.903 8 C -0.127 4.127 9 N -0.525 5.525 10 Si 0.694 3.306 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.189 1.189 14 C 0.337 3.663 15 O -0.447 6.447 16 C -0.169 4.169 17 C -0.094 4.094 18 C -0.018 4.018 19 C -0.179 4.179 20 C -0.056 4.056 21 N -0.201 5.201 22 C -0.063 4.063 23 C -0.182 4.182 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.667 8.196 7.682 11.356 hybrid contribution 0.754 -0.051 -0.999 1.252 sum 2.421 8.145 6.684 10.811 Atomic orbital electron populations 1.22168 0.95295 1.02215 1.02844 1.20878 0.94571 0.92235 0.87812 1.22212 1.00402 0.96783 1.03036 1.47917 1.45821 1.32287 1.04672 1.19905 0.89229 0.85029 0.97398 1.21388 0.95642 0.88974 1.51933 0.90257 1.24878 0.98073 0.95437 0.94298 1.69885 1.35834 0.98127 1.48692 0.86987 0.86207 0.78496 0.78931 1.19735 1.20777 1.18863 1.18179 0.80072 0.84176 0.83888 1.90647 1.40330 1.26821 1.86888 1.23467 1.00895 1.00097 0.92480 1.22124 0.98610 0.98191 0.90454 1.19458 0.94633 0.94163 0.93513 1.22579 0.98453 0.95782 1.01047 1.22694 0.97166 0.98370 0.87404 1.67567 1.10040 1.15226 1.27299 1.22629 0.93864 0.91092 0.98725 1.22320 1.01551 1.01682 0.92645 0.90524 0.92742 0.92331 0.89657 0.93271 0.92439 0.90702 0.94632 0.95319 0.92291 0.84229 0.84670 0.83852 0.82582 0.82861 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.13 37.16 0.34 -2.56 16 2 C 0.15 2.63 3.26 -67.93 -0.22 2.41 16 3 C -0.17 -2.57 9.24 37.16 0.34 -2.22 16 4 N -0.58 -11.48 2.41 -169.02 -0.41 -11.89 16 5 C 0.21 4.38 3.81 -5.19 -0.02 4.36 16 6 C -0.54 -13.75 9.93 -34.44 -0.34 -14.10 16 7 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 8 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.89 -25.18 13.96 55.43 0.77 -24.41 16 10 Si 0.87 19.06 27.47 -169.99 -4.67 14.39 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 14 C 0.55 10.79 6.99 -12.87 -0.09 10.70 16 15 O -0.56 -11.59 12.43 5.22 0.06 -11.52 16 16 C -0.15 -2.65 8.62 -37.46 -0.32 -2.97 16 17 C -0.07 -1.15 9.50 -37.12 -0.35 -1.51 16 18 C -0.01 -0.14 5.90 -104.74 -0.62 -0.76 16 19 C -0.16 -2.31 9.49 -38.96 -0.37 -2.68 16 20 C 0.10 1.37 11.17 -17.62 -0.20 1.17 16 21 N -0.49 -6.93 10.34 -13.35 -0.14 -7.06 16 22 C 0.09 1.13 11.17 -17.62 -0.20 0.93 16 23 C -0.16 -1.98 9.90 -38.96 -0.39 -2.37 16 24 H 0.08 1.44 5.89 -51.93 -0.31 1.14 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.49 7.83 -51.93 -0.41 1.08 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.28 6.22 -51.93 -0.32 0.96 16 31 H 0.04 0.75 7.02 -51.93 -0.36 0.39 16 32 H 0.03 0.58 5.71 -51.93 -0.30 0.29 16 33 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.14 2.52 4.41 -52.49 -0.23 2.29 16 35 H 0.14 2.03 7.53 -52.49 -0.40 1.63 16 36 H 0.14 2.09 6.30 -52.48 -0.33 1.76 16 37 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -29.46 324.93 -7.21 -36.67 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.20 Total: 6.60 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.53 Total: -7.67 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.23 Total: -43.36 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.06 Total: -11.52 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.67 Total: 14.39 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.46 -7.21 -36.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491363987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.875 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds