Wall clock time and date at job start Mon Mar 30 2020 01:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47389 * 2 1 4 4 N 1.46498 * 109.47348 * 120.00642 * 2 1 3 5 5 C 1.46496 * 120.00043 * 124.56941 * 4 2 1 6 6 C 1.50708 * 109.47169 * 269.99971 * 5 4 2 7 7 H 1.07999 * 119.99579 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00196 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00250 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99833 * 359.97438 * 8 6 5 11 11 H 1.48511 * 109.47199 * 90.00256 * 10 8 6 12 12 H 1.48504 * 109.47266 * 209.99630 * 10 8 6 13 13 H 1.48499 * 109.47582 * 329.99877 * 10 8 6 14 14 C 1.34770 * 119.99874 * 304.56691 * 4 2 1 15 15 O 1.21667 * 120.00271 * 354.55010 * 14 4 2 16 16 C 1.46653 * 120.00072 * 174.54574 * 14 4 2 17 17 C 1.34636 * 119.99968 * 184.98122 * 16 14 4 18 18 C 1.47408 * 119.99854 * 180.02562 * 17 16 14 19 19 C 1.40141 * 120.94832 * 359.71377 * 18 17 16 20 20 C 1.37997 * 118.96409 * 179.75552 * 19 18 17 21 21 N 1.31888 * 120.92639 * 0.53560 * 20 19 18 22 22 C 1.31877 * 122.11330 * 359.74107 * 21 20 19 23 23 C 1.38001 * 120.92484 * 359.97175 * 22 21 20 24 24 H 1.09003 * 109.46814 * 295.13886 * 1 2 3 25 25 H 1.08999 * 109.47333 * 55.13285 * 1 2 3 26 26 H 1.08996 * 109.47193 * 175.13677 * 1 2 3 27 27 H 1.09005 * 109.46981 * 240.00941 * 2 1 3 28 28 H 1.08991 * 109.47446 * 184.94094 * 3 2 1 29 29 H 1.08998 * 109.47208 * 304.95080 * 3 2 1 30 30 H 1.09003 * 109.46641 * 64.94358 * 3 2 1 31 31 H 1.08999 * 109.47169 * 29.99739 * 5 4 2 32 32 H 1.08998 * 109.47336 * 149.99902 * 5 4 2 33 33 H 0.96999 * 120.00529 * 180.02562 * 9 8 6 34 34 H 1.07998 * 120.00260 * 4.97677 * 16 14 4 35 35 H 1.07996 * 120.00235 * 359.97438 * 17 16 14 36 36 H 1.08004 * 120.51587 * 0.02562 * 19 18 17 37 37 H 1.08005 * 119.53887 * 180.27247 * 20 19 18 38 38 H 1.08005 * 119.53836 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.51406 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9412 -1.8207 1.0638 6 6 2.1546 -3.1015 0.9531 7 1 1.0752 -3.0760 0.9782 8 6 2.8129 -4.3054 0.8186 9 7 2.1265 -5.4230 0.7214 10 14 4.6799 -4.3490 0.7729 11 1 5.2054 -4.4994 2.1538 12 1 5.1281 -5.4975 -0.0550 13 1 5.1904 -3.0851 0.1839 14 6 1.6187 -0.2865 2.4180 15 8 0.9326 0.7115 2.5345 16 6 2.0106 -1.0497 3.6074 17 6 1.5299 -0.7052 4.8169 18 6 1.9243 -1.4720 6.0125 19 6 2.7937 -2.5666 5.9122 20 6 3.1398 -3.2522 7.0587 21 7 2.6566 -2.8966 8.2332 22 6 1.8317 -1.8771 8.3723 23 6 1.4361 -1.1309 7.2809 24 1 -0.3633 0.4366 0.9304 25 1 -0.3634 0.5875 -0.8432 26 1 -0.3633 -1.0239 -0.0871 27 1 1.8933 -0.5137 -0.8901 28 1 3.1264 1.4438 -0.0885 29 1 1.6062 1.9813 -0.8423 30 1 1.7508 1.9301 0.9310 31 1 3.5501 -1.6898 0.1693 32 1 3.5879 -1.8662 1.9401 33 1 2.5896 -6.2700 0.6272 34 1 2.6848 -1.8881 3.5131 35 1 0.8560 0.1334 4.9113 36 1 3.1900 -2.8661 4.9532 37 1 3.8127 -4.0945 6.9927 38 1 1.4614 -1.6219 9.3543 39 1 0.7606 -0.2970 7.4025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491363987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:20 Heat of formation + Delta-G solvation = -0.607700 kcal Electronic energy + Delta-G solvation = -20842.598615 eV Core-core repulsion = 17749.984062 eV Total energy + Delta-G solvation = -3092.614553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24457 -40.82512 -37.23111 -35.88627 -34.90448 -33.49716 -32.24909 -31.30538 -29.47491 -28.04390 -26.12567 -24.56455 -24.25125 -23.38648 -21.35428 -19.51424 -19.05859 -18.35428 -17.65218 -17.02102 -16.77770 -16.36594 -16.30955 -15.64914 -15.28947 -14.89655 -14.76811 -14.53179 -14.50366 -14.25742 -14.14341 -13.80873 -13.35038 -13.18270 -12.85596 -12.67315 -12.57862 -12.32276 -12.26011 -11.97028 -11.93499 -11.83369 -11.63345 -10.80066 -10.54964 -10.50435 -10.13494 -9.81465 -9.36129 -8.29454 -6.37095 -0.55003 0.18549 1.01432 1.38969 1.41683 1.50561 2.18307 2.33830 2.42234 2.93461 3.04295 3.40394 3.56805 3.74141 3.91453 4.06903 4.13159 4.23638 4.24165 4.28735 4.38167 4.60833 4.66020 4.78044 4.79506 4.85918 4.91004 4.92681 4.93929 4.98106 5.00265 5.18792 5.37322 5.39099 5.45348 5.51144 5.72322 5.84486 6.18312 6.61194 6.71083 6.98259 7.23601 7.33626 8.86853 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.012363 B = 0.006742 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.243563 B = 4151.856711 C = 5885.112382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.153 4.153 4 N -0.586 5.586 5 C 0.214 3.786 6 C -0.537 4.537 7 H 0.029 0.971 8 C 0.021 3.979 9 N -0.942 5.942 10 Si 0.935 3.065 11 H -0.257 1.257 12 H -0.287 1.287 13 H -0.240 1.240 14 C 0.543 3.457 15 O -0.577 6.577 16 C -0.185 4.185 17 C -0.041 4.041 18 C -0.034 4.034 19 C -0.171 4.171 20 C 0.092 3.908 21 N -0.506 5.506 22 C 0.093 3.907 23 C -0.150 4.150 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.031 0.969 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.268 0.732 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.173 0.827 38 H 0.190 0.810 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 9.923 8.097 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.034 3.966 3 C -0.211 4.211 4 N -0.315 5.315 5 C 0.092 3.908 6 C -0.575 4.575 7 H 0.047 0.953 8 C -0.178 4.178 9 N -0.582 5.582 10 Si 0.758 3.242 11 H -0.181 1.181 12 H -0.213 1.213 13 H -0.163 1.163 14 C 0.334 3.666 15 O -0.461 6.461 16 C -0.207 4.207 17 C -0.061 4.061 18 C -0.042 4.042 19 C -0.191 4.191 20 C -0.064 4.064 21 N -0.216 5.216 22 C -0.063 4.063 23 C -0.170 4.170 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.151 0.849 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.190 0.810 38 H 0.207 0.793 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.978 9.758 8.815 13.484 hybrid contribution 0.190 -0.512 -1.224 1.340 sum 3.168 9.246 7.592 12.376 Atomic orbital electron populations 1.22087 0.95392 1.00901 1.03293 1.21139 0.94626 0.93704 0.87175 1.22093 1.00995 0.94838 1.03212 1.47977 1.45945 1.32027 1.05549 1.19734 0.89144 0.83555 0.98404 1.21485 0.93647 0.91234 1.51142 0.95278 1.25761 1.03613 0.94682 0.93740 1.70053 1.38272 0.98991 1.50837 0.85895 0.79390 0.79204 0.79720 1.18130 1.21295 1.16306 1.18462 0.79700 0.84110 0.84311 1.90624 1.40955 1.27412 1.87140 1.23311 1.03401 1.01186 0.92766 1.22287 0.96387 0.97206 0.90198 1.19555 0.95888 0.94700 0.94043 1.22629 0.98965 0.96327 1.01139 1.22959 0.97502 0.98828 0.87101 1.67635 1.10599 1.16062 1.27291 1.23258 0.92767 0.90033 1.00266 1.22663 1.00839 1.02006 0.91478 0.92130 0.89629 0.94938 0.89464 0.92418 0.89787 0.92434 0.93495 0.93667 0.92307 0.84898 0.83864 0.84701 0.80960 0.79280 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 9.13 71.98 0.66 -4.89 16 2 C 0.14 4.77 3.26 44.99 0.15 4.92 16 3 C -0.15 -4.46 9.24 71.98 0.67 -3.80 16 4 N -0.59 -23.39 2.41 -806.89 -1.94 -25.34 16 5 C 0.21 9.05 3.81 85.64 0.33 9.38 16 6 C -0.54 -28.12 9.93 25.60 0.25 -27.87 16 7 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 8 C 0.02 1.11 5.47 84.65 0.46 1.58 16 9 N -0.94 -55.32 13.96 21.45 0.30 -55.02 16 10 Si 0.94 38.87 27.47 68.60 1.88 40.75 16 11 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 12 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.24 -8.98 6.54 99.48 0.65 -8.33 16 14 C 0.54 21.64 6.99 86.44 0.60 22.25 16 15 O -0.58 -23.79 12.43 -4.24 -0.05 -23.84 16 16 C -0.19 -6.69 8.62 23.64 0.20 -6.49 16 17 C -0.04 -1.26 9.50 23.86 0.23 -1.03 16 18 C -0.03 -0.94 5.90 -19.94 -0.12 -1.05 16 19 C -0.17 -4.90 9.49 22.67 0.22 -4.68 16 20 C 0.09 2.41 11.17 84.63 0.95 3.36 16 21 N -0.51 -13.21 10.34 -196.14 -2.03 -15.23 16 22 C 0.09 1.97 11.17 84.63 0.95 2.91 16 23 C -0.15 -3.26 9.90 22.67 0.22 -3.03 16 24 H 0.06 2.31 5.89 -2.39 -0.01 2.29 16 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 2.98 7.83 -2.38 -0.02 2.97 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.89 6.22 -2.39 -0.01 1.88 16 31 H 0.05 1.90 7.02 -2.39 -0.02 1.88 16 32 H 0.05 1.79 5.71 -2.39 -0.01 1.78 16 33 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.13 4.91 4.41 -2.91 -0.01 4.90 16 35 H 0.14 4.12 7.53 -2.91 -0.02 4.10 16 36 H 0.14 4.02 6.30 -2.91 -0.02 4.00 16 37 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -65.72 324.93 4.91 -60.80 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.99 Total: 26.33 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.76 Total: -8.46 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -3.67 Total: -95.59 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.88 Total: 40.75 kcal Total: -65.72 4.91 -60.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491363987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.197 kcal (2) G-P(sol) polarization free energy of solvation -65.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds