Wall clock time and date at job start Mon Mar 30 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47058 * 2 1 4 4 N 1.46498 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.36640 * 120.00130 * 265.85627 * 4 3 2 6 6 H 1.07995 * 120.00251 * 139.88728 * 5 4 3 7 7 C 1.39183 * 119.99764 * 319.89317 * 5 4 3 8 8 N 1.31278 * 120.00075 * 355.24299 * 7 5 4 9 9 Si 1.86805 * 120.00055 * 175.24004 * 7 5 4 10 10 H 1.48503 * 109.46620 * 60.00012 * 9 7 5 11 11 H 1.48501 * 109.47279 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46955 * 300.00163 * 9 7 5 13 13 C 1.34774 * 120.00089 * 85.85759 * 4 3 2 14 14 O 1.21738 * 120.00026 * 180.02562 * 13 4 3 15 15 C 1.46419 * 120.00213 * 359.97438 * 13 4 3 16 16 C 1.34845 * 120.00556 * 173.09081 * 15 13 4 17 17 C 1.47289 * 119.99722 * 352.06660 * 16 15 13 18 18 C 1.39739 * 119.76056 * 119.58870 * 17 16 15 19 19 C 1.38398 * 119.03600 * 180.02562 * 18 17 16 20 20 C 1.38760 * 118.52878 * 359.75086 * 19 18 17 21 21 C 1.50695 * 120.28786 * 180.26808 * 20 19 18 22 22 C 1.38487 * 119.42805 * 0.47067 * 20 19 18 23 23 N 1.31575 * 120.93814 * 359.52459 * 22 20 19 24 24 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47042 * 299.99863 * 1 2 3 26 26 H 1.09005 * 109.46612 * 59.99906 * 1 2 3 27 27 H 1.09004 * 109.46910 * 239.99662 * 2 1 3 28 28 H 1.08996 * 109.46554 * 120.00322 * 2 1 3 29 29 H 1.08999 * 109.47082 * 60.00162 * 3 2 1 30 30 H 1.08996 * 109.47568 * 300.00158 * 3 2 1 31 31 H 0.97006 * 120.00028 * 180.02562 * 8 7 5 32 32 H 1.08007 * 120.00040 * 353.09431 * 15 13 4 33 33 H 1.07995 * 120.00659 * 172.06501 * 16 15 13 34 34 H 1.08002 * 120.47935 * 0.02562 * 18 17 16 35 35 H 1.08001 * 120.73429 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47423 * 270.20947 * 21 20 19 37 37 H 1.09002 * 109.47535 * 30.20816 * 21 20 19 38 38 H 1.08999 * 109.47616 * 150.21253 * 21 20 19 39 39 H 1.07995 * 119.53452 * 179.78795 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1878 1.5281 1.1811 6 1 5.0771 0.9350 1.3349 7 6 3.7369 2.3796 2.1855 8 7 2.7114 3.1691 1.9655 9 14 4.5910 2.3991 3.8468 10 1 6.0152 2.7792 3.6665 11 1 3.9245 3.3853 4.7346 12 1 4.5128 1.0486 4.4594 13 6 4.1794 1.3579 -1.1632 14 8 5.3968 1.3574 -1.1626 15 6 3.4479 1.2656 -2.4282 16 6 4.1152 1.3214 -3.5987 17 6 5.5511 1.6492 -3.6128 18 6 6.4672 0.7304 -4.1315 19 6 7.8129 1.0537 -4.1369 20 6 8.2006 2.2855 -3.6294 21 6 9.6548 2.6807 -3.6214 22 6 7.2401 3.1470 -3.1263 23 7 5.9663 2.8174 -3.1317 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 2.3974 3.7628 2.6654 32 1 2.3738 1.1528 -2.4239 33 1 3.5969 1.1258 -4.5257 34 1 6.1300 -0.2182 -4.5225 35 1 8.5446 0.3642 -4.5316 36 1 10.1150 2.3544 -2.6887 37 1 10.1641 2.2094 -4.4621 38 1 9.7375 3.7641 -3.7076 39 1 7.5403 4.1048 -2.7277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492527903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:59 Heat of formation + Delta-G solvation = 21.621114 kcal Electronic energy + Delta-G solvation = -21070.917098 eV Core-core repulsion = 17979.266459 eV Total energy + Delta-G solvation = -3091.650639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.67462 -38.38660 -35.34282 -33.82149 -32.74645 -32.00386 -31.15349 -30.74758 -26.92973 -25.83371 -24.63322 -23.25024 -22.28158 -21.06154 -20.61322 -18.17480 -17.04426 -16.50846 -15.90176 -15.37836 -14.81852 -14.61650 -14.01491 -13.99979 -13.70465 -13.54349 -13.24882 -12.86055 -12.66096 -12.36709 -12.32134 -12.10505 -11.88219 -11.54124 -11.34959 -11.22725 -11.02470 -10.90941 -10.59588 -10.29857 -10.26717 -9.85561 -9.29352 -9.19292 -8.88594 -8.69373 -8.47914 -7.77496 -7.35424 -6.21167 -3.95891 1.42065 1.86354 2.22742 3.23488 3.26411 3.30711 4.17060 4.35079 4.55493 4.87064 4.97175 5.08609 5.14475 5.20306 5.37534 5.41222 5.65967 5.68348 5.74222 5.76985 5.79109 5.84514 5.98882 6.08942 6.23292 6.26243 6.32636 6.43647 6.47015 6.58190 6.65195 6.68347 6.80056 6.90333 7.04437 7.27652 7.43047 7.68604 8.34627 8.63076 8.66641 9.25943 9.46960 10.12026 10.76136 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.006057 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.785640 B = 4621.640003 C = 5907.765042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.089 3.911 4 N -0.432 5.432 5 C -0.293 4.293 6 H 0.086 0.914 7 C 0.034 3.966 8 N -0.877 5.877 9 Si 0.924 3.076 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.274 1.274 13 C 0.481 3.519 14 O -0.567 6.567 15 C -0.137 4.137 16 C -0.094 4.094 17 C 0.193 3.807 18 C -0.166 4.166 19 C -0.079 4.079 20 C -0.159 4.159 21 C -0.103 4.103 22 C 0.114 3.886 23 N -0.444 5.444 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.131 0.869 30 H 0.044 0.956 31 H 0.269 0.731 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -3.412 -9.814 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C -0.035 4.035 4 N -0.149 5.149 5 C -0.422 4.422 6 H 0.104 0.896 7 C -0.168 4.168 8 N -0.517 5.517 9 Si 0.751 3.249 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.200 1.200 13 C 0.271 3.729 14 O -0.451 6.451 15 C -0.160 4.160 16 C -0.115 4.115 17 C 0.057 3.943 18 C -0.186 4.186 19 C -0.105 4.105 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.045 4.045 23 N -0.152 5.152 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.916 -2.672 -9.304 9.868 hybrid contribution 0.738 -0.623 0.601 1.137 sum 2.654 -3.294 -8.703 9.677 Atomic orbital electron populations 1.21671 0.96450 1.00482 1.01555 1.21994 0.94811 0.99571 1.01404 1.21989 0.82105 0.94343 1.05019 1.43289 1.04729 1.62310 1.04620 1.19342 1.10036 1.22213 0.90566 0.89608 1.25486 0.96660 0.94327 1.00368 1.69519 1.24975 1.23004 1.34166 0.86038 0.79696 0.77994 0.81183 1.19799 1.20875 1.19952 1.18278 0.87685 0.82907 0.84009 1.90642 1.13497 1.54547 1.86424 1.23562 0.99702 0.98857 0.93832 1.21829 0.91497 1.00611 0.97539 1.19711 0.93590 0.89907 0.91047 1.21923 0.93618 1.00081 1.02943 1.21159 0.95632 0.95598 0.98088 1.20828 0.96988 0.95963 1.02298 1.20631 0.91846 1.01539 1.01991 1.22448 0.88054 0.98777 0.95269 1.67781 1.17666 1.18627 1.11176 0.93630 0.92675 0.93260 0.93515 0.91947 0.85169 0.93738 0.92064 0.85759 0.85011 0.85698 0.85844 0.91385 0.92056 0.91702 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 37.16 0.37 -1.80 16 2 C -0.14 -2.60 6.10 -26.73 -0.16 -2.77 16 3 C 0.09 2.00 4.55 -4.04 -0.02 1.98 16 4 N -0.43 -11.30 2.53 -116.41 -0.29 -11.60 16 5 C -0.29 -8.29 8.92 -15.06 -0.13 -8.43 16 6 H 0.09 2.54 7.74 -52.49 -0.41 2.13 16 7 C 0.03 0.93 5.28 -17.44 -0.09 0.84 16 8 N -0.88 -23.82 10.75 55.51 0.60 -23.22 16 9 Si 0.92 21.22 29.56 -169.99 -5.02 16.19 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.48 12.31 7.35 -12.97 -0.10 12.22 16 14 O -0.57 -16.14 13.22 5.15 0.07 -16.07 16 15 C -0.14 -2.78 8.86 -37.49 -0.33 -3.11 16 16 C -0.09 -1.68 9.87 -37.11 -0.37 -2.05 16 17 C 0.19 3.83 4.38 -83.13 -0.36 3.46 16 18 C -0.17 -2.80 9.84 -38.96 -0.38 -3.19 16 19 C -0.08 -1.22 9.84 -39.33 -0.39 -1.61 16 20 C -0.16 -2.53 5.91 -104.34 -0.62 -3.14 16 21 C -0.10 -1.21 10.03 36.00 0.36 -0.85 16 22 C 0.11 2.14 10.85 -17.57 -0.19 1.95 16 23 N -0.44 -9.64 8.78 -9.91 -0.09 -9.73 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.83 7.59 -51.93 -0.39 0.44 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.13 3.23 5.10 -51.93 -0.26 2.97 16 30 H 0.04 0.93 6.45 -51.93 -0.33 0.60 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.12 2.16 6.10 -52.48 -0.32 1.84 16 33 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.14 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -33.17 328.25 -7.71 -40.88 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.50 Total: 5.10 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.41 Total: -6.49 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.21 Total: -44.55 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.07 Total: -16.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.17 -7.71 -40.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492527903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.497 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds