Wall clock time and date at job start Mon Mar 30 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47058 * 2 1 4 4 N 1.46498 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.36640 * 120.00130 * 265.85627 * 4 3 2 6 6 H 1.07995 * 120.00251 * 139.88728 * 5 4 3 7 7 C 1.39183 * 119.99764 * 319.89317 * 5 4 3 8 8 N 1.31278 * 120.00075 * 355.24299 * 7 5 4 9 9 Si 1.86805 * 120.00055 * 175.24004 * 7 5 4 10 10 H 1.48503 * 109.46620 * 60.00012 * 9 7 5 11 11 H 1.48501 * 109.47279 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46955 * 300.00163 * 9 7 5 13 13 C 1.34774 * 120.00089 * 85.85759 * 4 3 2 14 14 O 1.21738 * 120.00026 * 180.02562 * 13 4 3 15 15 C 1.46419 * 120.00213 * 359.97438 * 13 4 3 16 16 C 1.34845 * 120.00556 * 173.09081 * 15 13 4 17 17 C 1.47289 * 119.99722 * 352.06660 * 16 15 13 18 18 C 1.39739 * 119.76056 * 119.58870 * 17 16 15 19 19 C 1.38398 * 119.03600 * 180.02562 * 18 17 16 20 20 C 1.38760 * 118.52878 * 359.75086 * 19 18 17 21 21 C 1.50695 * 120.28786 * 180.26808 * 20 19 18 22 22 C 1.38487 * 119.42805 * 0.47067 * 20 19 18 23 23 N 1.31575 * 120.93814 * 359.52459 * 22 20 19 24 24 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47042 * 299.99863 * 1 2 3 26 26 H 1.09005 * 109.46612 * 59.99906 * 1 2 3 27 27 H 1.09004 * 109.46910 * 239.99662 * 2 1 3 28 28 H 1.08996 * 109.46554 * 120.00322 * 2 1 3 29 29 H 1.08999 * 109.47082 * 60.00162 * 3 2 1 30 30 H 1.08996 * 109.47568 * 300.00158 * 3 2 1 31 31 H 0.97006 * 120.00028 * 180.02562 * 8 7 5 32 32 H 1.08007 * 120.00040 * 353.09431 * 15 13 4 33 33 H 1.07995 * 120.00659 * 172.06501 * 16 15 13 34 34 H 1.08002 * 120.47935 * 0.02562 * 18 17 16 35 35 H 1.08001 * 120.73429 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47423 * 270.20947 * 21 20 19 37 37 H 1.09002 * 109.47535 * 30.20816 * 21 20 19 38 38 H 1.08999 * 109.47616 * 150.21253 * 21 20 19 39 39 H 1.07995 * 119.53452 * 179.78795 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1878 1.5281 1.1811 6 1 5.0771 0.9350 1.3349 7 6 3.7369 2.3796 2.1855 8 7 2.7114 3.1691 1.9655 9 14 4.5910 2.3991 3.8468 10 1 6.0152 2.7792 3.6665 11 1 3.9245 3.3853 4.7346 12 1 4.5128 1.0486 4.4594 13 6 4.1794 1.3579 -1.1632 14 8 5.3968 1.3574 -1.1626 15 6 3.4479 1.2656 -2.4282 16 6 4.1152 1.3214 -3.5987 17 6 5.5511 1.6492 -3.6128 18 6 6.4672 0.7304 -4.1315 19 6 7.8129 1.0537 -4.1369 20 6 8.2006 2.2855 -3.6294 21 6 9.6548 2.6807 -3.6214 22 6 7.2401 3.1470 -3.1263 23 7 5.9663 2.8174 -3.1317 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 2.3974 3.7628 2.6654 32 1 2.3738 1.1528 -2.4239 33 1 3.5969 1.1258 -4.5257 34 1 6.1300 -0.2182 -4.5225 35 1 8.5446 0.3642 -4.5316 36 1 10.1150 2.3544 -2.6887 37 1 10.1641 2.2094 -4.4621 38 1 9.7375 3.7641 -3.7076 39 1 7.5403 4.1048 -2.7277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492527903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:59 Heat of formation + Delta-G solvation = 1.697013 kcal Electronic energy + Delta-G solvation = -21071.781072 eV Core-core repulsion = 17979.266459 eV Total energy + Delta-G solvation = -3092.514613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09176 -40.16997 -37.15453 -35.26129 -34.48864 -33.40914 -32.95101 -32.10538 -28.37895 -27.45529 -26.32427 -24.68818 -23.70887 -22.54887 -22.16531 -19.84700 -18.87776 -18.29341 -17.32964 -17.07379 -16.48094 -15.96570 -15.65204 -15.48962 -15.32874 -15.23223 -14.57113 -14.39362 -13.95485 -13.88643 -13.53864 -13.32058 -13.26490 -13.17834 -13.03097 -12.99488 -12.56749 -12.36595 -12.23334 -12.07161 -11.92977 -11.51245 -10.91723 -10.68087 -10.56394 -10.34453 -10.06706 -9.36529 -9.21742 -8.23762 -6.08563 0.02992 0.53243 0.79801 1.35723 1.39917 1.46738 2.26714 2.61687 3.01695 3.15017 3.21907 3.57558 3.90682 4.00701 4.12282 4.21060 4.22876 4.28515 4.41376 4.48414 4.63866 4.65325 4.78691 4.82710 4.85050 5.01085 5.03546 5.07902 5.17630 5.19426 5.31826 5.36397 5.40103 5.40950 5.46560 5.56346 5.75261 5.99291 6.27648 6.64708 7.22351 7.28978 7.53000 8.16344 8.70705 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.016537 B = 0.006057 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.785640 B = 4621.640003 C = 5907.765042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.092 3.908 4 N -0.451 5.451 5 C -0.327 4.327 6 H 0.057 0.943 7 C -0.001 4.001 8 N -0.894 5.894 9 Si 0.983 3.017 10 H -0.283 1.283 11 H -0.267 1.267 12 H -0.264 1.264 13 C 0.470 3.530 14 O -0.609 6.609 15 C -0.170 4.170 16 C -0.057 4.057 17 C 0.149 3.851 18 C -0.166 4.166 19 C -0.084 4.084 20 C -0.153 4.153 21 C -0.100 4.100 22 C 0.079 3.921 23 N -0.490 5.490 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.273 0.727 32 H 0.153 0.847 33 H 0.185 0.815 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.056 -4.477 -11.442 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C -0.031 4.031 4 N -0.168 5.168 5 C -0.456 4.456 6 H 0.075 0.925 7 C -0.202 4.202 8 N -0.533 5.533 9 Si 0.807 3.193 10 H -0.209 1.209 11 H -0.192 1.192 12 H -0.189 1.189 13 C 0.262 3.738 14 O -0.496 6.496 15 C -0.192 4.192 16 C -0.078 4.078 17 C 0.014 3.986 18 C -0.186 4.186 19 C -0.109 4.109 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.080 4.080 23 N -0.199 5.199 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.170 0.830 33 H 0.202 0.798 34 H 0.172 0.828 35 H 0.181 0.819 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.887 -3.736 -10.940 11.714 hybrid contribution 0.876 -0.275 0.964 1.331 sum 2.763 -4.011 -9.976 11.101 Atomic orbital electron populations 1.21619 0.93258 1.02282 1.02165 1.21867 0.97424 0.96747 1.00730 1.21999 0.80224 0.96655 1.04233 1.43538 1.06094 1.62881 1.04326 1.19250 1.10279 1.23437 0.92623 0.92538 1.26184 0.97171 0.93628 1.03252 1.69639 1.25434 1.23053 1.35158 0.85161 0.77980 0.78716 0.77442 1.20850 1.19170 1.18860 1.19138 0.87667 0.81417 0.85559 1.90591 1.15411 1.56119 1.87445 1.23409 1.00807 1.03096 0.91918 1.22500 0.90915 0.95648 0.98710 1.20186 0.95119 0.90579 0.92766 1.22309 0.94030 1.00484 1.01772 1.21693 0.96029 0.95911 0.97276 1.21271 0.98523 0.95541 1.00177 1.20708 0.89113 1.02688 1.03177 1.22752 0.88297 1.00074 0.96870 1.67663 1.19397 1.20368 1.12455 0.91213 0.93316 0.91424 0.92514 0.94272 0.87637 0.92520 0.91685 0.82989 0.79838 0.82752 0.81874 0.91230 0.89265 0.90549 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.13 -4.79 6.10 30.60 0.19 -4.60 16 3 C 0.09 4.19 4.55 86.38 0.39 4.59 16 4 N -0.45 -24.49 2.53 -640.41 -1.62 -26.11 16 5 C -0.33 -19.46 8.92 84.17 0.75 -18.71 16 6 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.00 -0.07 5.28 85.00 0.45 0.38 16 8 N -0.89 -49.73 10.75 21.70 0.23 -49.49 16 9 Si 0.98 44.60 29.56 68.60 2.03 46.63 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 C 0.47 24.82 7.35 86.37 0.63 25.45 16 14 O -0.61 -36.15 13.22 -4.47 -0.06 -36.21 16 15 C -0.17 -6.80 8.86 23.62 0.21 -6.59 16 16 C -0.06 -1.96 9.87 23.87 0.24 -1.72 16 17 C 0.15 5.82 4.38 41.71 0.18 6.00 16 18 C -0.17 -5.30 9.84 22.67 0.22 -5.08 16 19 C -0.08 -2.39 9.84 22.43 0.22 -2.17 16 20 C -0.15 -4.70 5.91 -19.68 -0.12 -4.81 16 21 C -0.10 -2.12 10.03 71.23 0.71 -1.40 16 22 C 0.08 3.02 10.85 84.79 0.92 3.94 16 23 N -0.49 -21.75 8.78 -185.26 -1.63 -23.37 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.06 1.97 7.59 -2.39 -0.02 1.96 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.11 5.39 5.10 -2.39 -0.01 5.37 16 30 H 0.06 2.38 6.45 -2.39 -0.02 2.36 16 31 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 32 H 0.15 5.03 6.10 -2.91 -0.02 5.02 16 33 H 0.18 4.16 8.06 -2.91 -0.02 4.14 16 34 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 38 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 39 H 0.15 5.16 8.06 -2.91 -0.02 5.13 16 Total: -1.00 -77.34 328.25 5.70 -71.64 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.04 Total: 24.74 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.72 Total: -7.83 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -3.02 Total: -98.98 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.06 Total: -36.21 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -77.34 5.70 -71.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492527903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.333 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds