Wall clock time and date at job start Mon Mar 30 2020 01:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69360 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69117 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69381 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21691 * 120.00029 * 0.02562 * 14 13 3 16 16 C 1.46427 * 120.00077 * 179.97438 * 14 13 3 17 17 C 1.34793 * 120.00242 * 180.02562 * 16 14 13 18 18 C 1.47215 * 120.00270 * 180.02562 * 17 16 14 19 19 C 1.40266 * 120.58434 * 179.71652 * 18 17 16 20 20 C 1.38291 * 118.26488 * 179.80095 * 19 18 17 21 21 C 1.38396 * 119.33016 * 0.48077 * 20 19 18 22 22 C 1.50701 * 119.42948 * 179.74144 * 21 20 19 23 23 N 1.31936 * 121.14135 * 359.76235 * 21 20 19 24 24 C 1.31665 * 121.90505 * 359.97438 * 23 21 20 25 25 H 1.09009 * 109.47036 * 59.99601 * 1 2 3 26 26 H 1.09002 * 109.47312 * 300.00490 * 1 2 3 27 27 H 1.08997 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46999 * 120.00379 * 2 1 3 29 29 H 1.09004 * 109.47039 * 239.99963 * 2 1 3 30 30 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 32 32 H 1.08000 * 119.99536 * 0.02562 * 16 14 13 33 33 H 1.08000 * 120.00222 * 0.02562 * 17 16 14 34 34 H 1.07998 * 120.86868 * 0.02562 * 19 18 17 35 35 H 1.07998 * 120.33720 * 180.22300 * 20 19 18 36 36 H 1.08996 * 109.46945 * 270.02184 * 22 21 20 37 37 H 1.09001 * 109.46967 * 30.02270 * 22 21 20 38 38 H 1.09003 * 109.47125 * 150.01670 * 22 21 20 39 39 H 1.07991 * 119.73681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4447 -0.1409 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5891 -1.3855 8 7 5.4206 1.4962 -1.5215 9 14 3.0421 1.9170 -2.8784 10 1 2.7757 3.3739 -2.9863 11 1 3.7404 1.4495 -4.1028 12 1 1.7564 1.1882 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6589 1.3901 15 8 -0.3370 2.6301 0.4631 16 6 0.0776 3.3080 2.6484 17 6 -1.1385 3.8742 2.7798 18 6 -1.5137 4.5273 4.0447 19 6 -2.7737 5.1254 4.1928 20 6 -3.0774 5.7217 5.4030 21 6 -2.1344 5.7184 6.4160 22 6 -2.4608 6.3727 7.7337 23 7 -0.9544 5.1527 6.2478 24 6 -0.6181 4.5674 5.1174 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 5.8253 1.5975 -2.3973 31 1 2.2948 2.1150 1.9978 32 1 0.7768 3.3332 3.4711 33 1 -1.8379 3.8487 1.9572 34 1 -3.4895 5.1172 3.3841 35 1 -4.0392 6.1890 5.5548 36 1 -2.1624 7.4206 7.7027 37 1 -3.5332 6.3055 7.9169 38 1 -1.9229 5.8652 8.5345 39 1 0.3574 4.1148 5.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492558169.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:35 Heat of formation + Delta-G solvation = -1.332382 kcal Electronic energy + Delta-G solvation = -20021.635222 eV Core-core repulsion = 16928.989245 eV Total energy + Delta-G solvation = -3092.645977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.44507 -39.15205 -35.53092 -34.65240 -32.62183 -32.37119 -31.82838 -31.06303 -27.94300 -27.11610 -24.39473 -23.34426 -22.61796 -21.40650 -19.68475 -19.41843 -17.77159 -16.79003 -16.38703 -15.90555 -15.59658 -15.08223 -14.75740 -14.57896 -14.18112 -13.79444 -13.49463 -13.26609 -12.89551 -12.77980 -12.52346 -12.40931 -12.08171 -11.94755 -11.85396 -11.79771 -10.95736 -10.75785 -10.68916 -10.62252 -10.02034 -9.85612 -9.82714 -9.67554 -9.26563 -9.18289 -8.71083 -8.44060 -7.97669 -6.24542 -4.28298 0.33337 1.02095 1.96655 3.25801 3.33671 3.41023 3.55288 3.90643 3.93233 4.06140 4.31836 4.43957 4.63151 4.68354 4.75251 5.07103 5.12237 5.16443 5.24738 5.27885 5.48853 5.55428 5.72009 5.83082 5.84277 6.05275 6.08738 6.23157 6.32940 6.36143 6.48903 6.65492 6.78587 6.96690 7.00703 7.28548 7.35658 7.55574 7.74213 8.13384 8.56282 8.76227 8.96955 9.37630 10.87158 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031965 B = 0.003365 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.744402 B = 8318.218119 C = 8581.433596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.694 5.694 14 C 0.528 3.472 15 O -0.556 6.556 16 C -0.180 4.180 17 C -0.048 4.048 18 C -0.117 4.117 19 C -0.057 4.057 20 C -0.173 4.173 21 C 0.124 3.876 22 C -0.105 4.105 23 N -0.484 5.484 24 C 0.117 3.883 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.268 0.732 31 H 0.394 0.606 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.651 7.208 14.304 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.133 3.867 4 H 0.070 0.930 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.342 5.342 14 C 0.315 3.685 15 O -0.438 6.438 16 C -0.201 4.201 17 C -0.069 4.069 18 C -0.119 4.119 19 C -0.082 4.082 20 C -0.193 4.193 21 C -0.013 4.013 22 C -0.162 4.162 23 N -0.193 5.193 24 C -0.040 4.040 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.401 7.184 14.182 22.134 hybrid contribution -0.617 0.154 -1.241 1.394 sum -16.018 7.338 12.941 21.861 Atomic orbital electron populations 1.21908 0.97425 0.98822 1.02051 1.22070 0.93669 0.99393 1.01261 1.19192 0.95537 0.89150 0.82808 0.93050 1.21015 0.88668 1.51761 0.95492 0.90313 1.24940 0.94879 0.93670 0.98821 1.69887 1.09765 1.48307 1.24510 0.86904 0.81286 0.79642 0.82202 1.19871 1.21211 1.18309 1.46551 1.14243 1.55125 1.18233 1.18262 0.83013 0.79607 0.87612 1.90766 1.50988 1.60662 1.41374 1.23267 0.97703 1.00780 0.98353 1.22107 0.96674 0.93510 0.94588 1.20085 0.95470 1.00767 0.95597 1.21819 0.95421 0.93643 0.97351 1.21893 1.01119 1.02249 0.94021 1.21428 0.89347 0.94335 0.96217 1.20731 1.02057 1.00522 0.92873 1.67489 1.18436 1.09073 1.24303 1.23153 0.99180 0.94266 0.87445 0.93122 0.93128 0.95120 0.92981 0.92073 0.92226 0.77226 0.85662 0.84501 0.84288 0.84628 0.90337 0.90723 0.90393 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.16 0.32 -2.56 16 2 C -0.12 -2.69 5.59 -26.73 -0.15 -2.84 16 3 C 0.24 5.51 1.89 -69.08 -0.13 5.38 16 4 H 0.05 1.32 4.73 -51.93 -0.25 1.07 16 5 C -0.53 -14.14 9.05 -34.44 -0.31 -14.45 16 6 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 9 Si 0.87 21.50 26.99 -169.99 -4.59 16.91 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.26 -6.26 6.82 56.52 0.39 -5.88 16 13 N -0.69 -13.68 5.02 -56.33 -0.28 -13.96 16 14 C 0.53 9.85 6.34 -12.96 -0.08 9.77 16 15 O -0.56 -12.08 13.37 5.20 0.07 -12.01 16 16 C -0.18 -2.52 9.42 -37.51 -0.35 -2.88 16 17 C -0.05 -0.62 9.48 -37.16 -0.35 -0.97 16 18 C -0.12 -1.33 5.88 -104.91 -0.62 -1.95 16 19 C -0.06 -0.54 9.95 -38.80 -0.39 -0.93 16 20 C -0.17 -1.50 9.72 -39.50 -0.38 -1.88 16 21 C 0.12 1.22 6.78 -82.49 -0.56 0.66 16 22 C -0.10 -0.70 10.16 36.01 0.37 -0.33 16 23 N -0.48 -5.79 10.25 -9.06 -0.09 -5.88 16 24 C 0.12 1.35 10.59 -17.04 -0.18 1.17 16 25 H 0.05 1.07 7.88 -51.92 -0.41 0.66 16 26 H 0.05 1.00 5.63 -51.93 -0.29 0.70 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 31 H 0.39 6.81 8.57 -40.82 -0.35 6.46 16 32 H 0.13 1.40 6.10 -52.49 -0.32 1.08 16 33 H 0.14 1.81 7.52 -52.49 -0.39 1.42 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.16 1.60 6.19 -52.49 -0.32 1.27 16 LS Contribution 327.36 15.07 4.93 4.93 Total: -1.00 -32.05 327.36 -7.40 -39.45 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.29 Total: 5.49 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -2.92 Total: -9.63 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.40 Total: -45.15 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.59 Total: 16.91 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.05 -7.40 -39.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492558169.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.120 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds