Wall clock time and date at job start Mon Mar 30 2020 01:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69360 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69117 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69381 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21691 * 120.00029 * 0.02562 * 14 13 3 16 16 C 1.46427 * 120.00077 * 179.97438 * 14 13 3 17 17 C 1.34793 * 120.00242 * 180.02562 * 16 14 13 18 18 C 1.47215 * 120.00270 * 180.02562 * 17 16 14 19 19 C 1.40266 * 120.58434 * 179.71652 * 18 17 16 20 20 C 1.38291 * 118.26488 * 179.80095 * 19 18 17 21 21 C 1.38396 * 119.33016 * 0.48077 * 20 19 18 22 22 C 1.50701 * 119.42948 * 179.74144 * 21 20 19 23 23 N 1.31936 * 121.14135 * 359.76235 * 21 20 19 24 24 C 1.31665 * 121.90505 * 359.97438 * 23 21 20 25 25 H 1.09009 * 109.47036 * 59.99601 * 1 2 3 26 26 H 1.09002 * 109.47312 * 300.00490 * 1 2 3 27 27 H 1.08997 * 109.47636 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46999 * 120.00379 * 2 1 3 29 29 H 1.09004 * 109.47039 * 239.99963 * 2 1 3 30 30 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 32 32 H 1.08000 * 119.99536 * 0.02562 * 16 14 13 33 33 H 1.08000 * 120.00222 * 0.02562 * 17 16 14 34 34 H 1.07998 * 120.86868 * 0.02562 * 19 18 17 35 35 H 1.07998 * 120.33720 * 180.22300 * 20 19 18 36 36 H 1.08996 * 109.46945 * 270.02184 * 22 21 20 37 37 H 1.09001 * 109.46967 * 30.02270 * 22 21 20 38 38 H 1.09003 * 109.47125 * 150.01670 * 22 21 20 39 39 H 1.07991 * 119.73681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4447 -0.1409 6 1 4.1651 1.3331 0.7331 7 6 4.1158 1.5891 -1.3855 8 7 5.4206 1.4962 -1.5215 9 14 3.0421 1.9170 -2.8784 10 1 2.7757 3.3739 -2.9863 11 1 3.7404 1.4495 -4.1028 12 1 1.7564 1.1882 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6589 1.3901 15 8 -0.3370 2.6301 0.4631 16 6 0.0776 3.3080 2.6484 17 6 -1.1385 3.8742 2.7798 18 6 -1.5137 4.5273 4.0447 19 6 -2.7737 5.1254 4.1928 20 6 -3.0774 5.7217 5.4030 21 6 -2.1344 5.7184 6.4160 22 6 -2.4608 6.3727 7.7337 23 7 -0.9544 5.1527 6.2478 24 6 -0.6181 4.5674 5.1174 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 5.8253 1.5975 -2.3973 31 1 2.2948 2.1150 1.9978 32 1 0.7768 3.3332 3.4711 33 1 -1.8379 3.8487 1.9572 34 1 -3.4895 5.1172 3.3841 35 1 -4.0392 6.1890 5.5548 36 1 -2.1624 7.4206 7.7027 37 1 -3.5332 6.3055 7.9169 38 1 -1.9229 5.8652 8.5345 39 1 0.3574 4.1148 5.0180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492558169.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:34 Heat of formation + Delta-G solvation = -22.212796 kcal Electronic energy + Delta-G solvation = -20022.540665 eV Core-core repulsion = 16928.989245 eV Total energy + Delta-G solvation = -3093.551420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25515 -40.64713 -37.12022 -35.74310 -34.38935 -33.39870 -33.22901 -32.14238 -29.58153 -28.16810 -25.38012 -24.74937 -23.90364 -22.49696 -21.36869 -20.74551 -19.27739 -18.21684 -17.54933 -17.07646 -16.92876 -16.21535 -16.00334 -15.94521 -15.44323 -15.01141 -14.78368 -14.62260 -14.05630 -13.94476 -13.76833 -13.67403 -13.45046 -13.11544 -13.00336 -12.94209 -12.66703 -12.55724 -12.35074 -11.87854 -11.73186 -11.57058 -11.21072 -10.85309 -10.77321 -10.60543 -10.44192 -9.73309 -9.27059 -8.39503 -6.45205 -0.56921 0.28403 0.95889 1.28678 1.32866 1.43873 2.26599 2.41677 2.52395 2.88168 3.03169 3.32150 3.70005 3.78170 3.89370 3.97220 4.23482 4.27012 4.33146 4.42352 4.44372 4.57155 4.72688 4.79645 4.82012 4.83334 5.00210 5.09787 5.12716 5.18152 5.24937 5.26193 5.36207 5.43338 5.43536 5.56779 5.73466 5.78923 6.14503 6.60289 6.94706 6.97613 7.21010 7.49507 8.75640 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031965 B = 0.003365 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.744402 B = 8318.218119 C = 8581.433596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.240 3.760 4 H 0.031 0.969 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.033 3.967 8 N -0.931 5.931 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.254 1.254 13 N -0.698 5.698 14 C 0.529 3.471 15 O -0.591 6.591 16 C -0.202 4.202 17 C -0.017 4.017 18 C -0.138 4.138 19 C -0.055 4.055 20 C -0.171 4.171 21 C 0.116 3.884 22 C -0.104 4.104 23 N -0.513 5.513 24 C 0.110 3.890 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.270 0.730 31 H 0.405 0.595 32 H 0.152 0.848 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.290 8.075 15.647 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C 0.136 3.864 4 H 0.049 0.951 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.168 4.168 8 N -0.569 5.569 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.178 1.178 13 N -0.346 5.346 14 C 0.319 3.681 15 O -0.475 6.475 16 C -0.222 4.222 17 C -0.038 4.038 18 C -0.140 4.140 19 C -0.080 4.080 20 C -0.190 4.190 21 C -0.021 4.021 22 C -0.161 4.161 23 N -0.223 5.223 24 C -0.048 4.048 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.240 0.760 32 H 0.169 0.831 33 H 0.150 0.850 34 H 0.178 0.822 35 H 0.188 0.812 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.047 8.054 15.556 25.150 hybrid contribution 0.086 -0.021 -1.474 1.477 sum -17.960 8.033 14.081 24.194 Atomic orbital electron populations 1.21770 0.95772 1.00282 1.01215 1.21985 0.95062 0.97937 1.01243 1.18921 0.93198 0.90361 0.83884 0.95129 1.21230 0.90353 1.50345 0.94576 0.92584 1.25606 0.95764 0.93976 1.01432 1.69986 1.11256 1.50427 1.25269 0.86066 0.80001 0.79257 0.79631 1.20075 1.20337 1.17808 1.46286 1.15322 1.55631 1.17356 1.18830 0.81890 0.78682 0.88711 1.90741 1.51755 1.61933 1.43028 1.23023 0.99252 1.02851 0.97117 1.22171 0.95638 0.91149 0.94857 1.20020 0.96695 1.02409 0.94894 1.22174 0.94942 0.92459 0.98429 1.22263 1.02184 1.01490 0.93053 1.22071 0.88879 0.93340 0.97767 1.20841 1.03659 1.00586 0.91012 1.67540 1.19857 1.10249 1.24614 1.23330 0.99660 0.94232 0.87557 0.94754 0.93134 0.92439 0.91984 0.93113 0.92050 0.75950 0.83070 0.85010 0.82162 0.81250 0.89328 0.88200 0.90940 0.81450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.53 71.98 0.61 -4.51 16 2 C -0.12 -5.25 5.59 30.59 0.17 -5.08 16 3 C 0.24 11.29 1.89 44.24 0.08 11.37 16 4 H 0.03 1.58 4.73 -2.39 -0.01 1.57 16 5 C -0.53 -28.54 9.05 25.60 0.23 -28.31 16 6 H 0.06 3.23 8.06 -2.91 -0.02 3.20 16 7 C 0.03 1.84 5.47 84.65 0.46 2.30 16 8 N -0.93 -55.79 13.96 21.45 0.30 -55.50 16 9 Si 0.93 44.89 26.99 68.60 1.85 46.74 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.25 -12.01 6.82 99.48 0.68 -11.33 16 13 N -0.70 -27.43 5.02 -450.34 -2.26 -29.69 16 14 C 0.53 19.51 6.34 86.37 0.55 20.06 16 15 O -0.59 -25.52 13.37 -4.32 -0.06 -25.58 16 16 C -0.20 -5.44 9.42 23.61 0.22 -5.22 16 17 C -0.02 -0.42 9.48 23.84 0.23 -0.20 16 18 C -0.14 -2.87 5.88 -20.05 -0.12 -2.98 16 19 C -0.05 -0.89 9.95 22.78 0.23 -0.66 16 20 C -0.17 -2.36 9.72 22.32 0.22 -2.14 16 21 C 0.12 1.99 6.78 42.58 0.29 2.28 16 22 C -0.10 -1.08 10.16 71.24 0.72 -0.36 16 23 N -0.51 -11.46 10.25 -182.59 -1.87 -13.33 16 24 C 0.11 2.37 10.59 85.09 0.90 3.27 16 25 H 0.03 1.41 7.88 -2.38 -0.02 1.39 16 26 H 0.05 1.93 5.63 -2.39 -0.01 1.92 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.41 13.99 8.57 -92.71 -0.79 13.20 16 32 H 0.15 3.18 6.10 -2.91 -0.02 3.16 16 33 H 0.13 3.31 7.52 -2.91 -0.02 3.29 16 34 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.10 0.53 8.07 -2.39 -0.02 0.51 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.17 3.15 6.19 -2.92 -0.02 3.13 16 Total: -1.00 -69.86 327.36 3.00 -66.86 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.24 Total: 20.67 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 4.80 Total: -10.17 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -3.83 Total: -98.52 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.06 Total: -25.58 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.85 Total: 46.74 kcal Total: -69.86 3.00 -66.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492558169.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.650 kcal (2) G-P(sol) polarization free energy of solvation -69.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds