Wall clock time and date at job start Mon Mar 30 2020 01:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46857 * 2 1 4 4 H 1.08997 * 109.47593 * 305.00304 * 3 2 1 5 5 C 1.50705 * 109.46853 * 184.99919 * 3 2 1 6 6 H 1.08003 * 119.99595 * 240.00374 * 5 3 2 7 7 C 1.37877 * 119.99907 * 60.00290 * 5 3 2 8 8 N 1.31517 * 119.99672 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47241 * 60.00263 * 9 7 5 11 11 H 1.48504 * 109.47039 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47422 * 300.00209 * 9 7 5 13 13 N 1.46503 * 109.46777 * 65.00155 * 3 2 1 14 14 C 1.34772 * 120.00149 * 274.99248 * 13 3 2 15 15 O 1.21669 * 119.99937 * 0.02562 * 14 13 3 16 16 C 1.46653 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.34636 * 119.99995 * 173.27770 * 16 14 13 18 18 C 1.47398 * 120.00235 * 349.95344 * 17 16 14 19 19 C 1.40159 * 120.94350 * 310.79433 * 18 17 16 20 20 C 1.37984 * 118.96269 * 179.97438 * 19 18 17 21 21 N 1.31892 * 120.92643 * 0.02562 * 20 19 18 22 22 C 1.31867 * 122.11714 * 0.02562 * 21 20 19 23 23 C 1.38017 * 120.92414 * 359.97438 * 22 21 20 24 24 C 1.50703 * 120.52246 * 180.02562 * 23 22 21 25 25 H 1.08993 * 109.47275 * 60.00216 * 1 2 3 26 26 H 1.09003 * 109.46532 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46895 * 299.99297 * 1 2 3 28 28 H 1.09003 * 109.46779 * 240.00159 * 2 1 3 29 29 H 1.09000 * 109.47034 * 120.00099 * 2 1 3 30 30 H 0.96999 * 119.99371 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00028 * 95.00308 * 13 3 2 32 32 H 1.08008 * 119.99732 * 353.28603 * 16 14 13 33 33 H 1.08006 * 119.99406 * 169.94936 * 17 16 14 34 34 H 1.07995 * 120.52242 * 359.95370 * 19 18 17 35 35 H 1.08001 * 119.53040 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.54027 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.46896 * 89.99694 * 24 23 22 38 38 H 1.08990 * 109.47562 * 209.99855 * 24 23 22 39 39 H 1.09002 * 109.46809 * 330.00032 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1472 -0.2349 11 1 6.3978 0.2167 -2.6504 12 1 6.4995 2.2815 -1.3820 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6643 1.3670 15 8 -0.3420 2.6319 0.4315 16 6 0.0473 3.3204 2.6200 17 6 -1.1110 4.0030 2.6920 18 6 -1.8803 4.2806 1.4657 19 6 -1.2591 4.8235 0.3327 20 6 -2.0183 5.0666 -0.7936 21 7 -3.3090 4.7960 -0.8124 22 6 -3.9337 4.2859 0.2310 23 6 -3.2536 4.0104 1.3999 24 6 -3.9764 3.4270 2.5866 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0617 -2.9494 31 1 2.2719 2.1231 1.9978 32 1 0.6910 3.2561 3.4850 33 1 -1.4764 4.3470 3.6484 34 1 -0.2028 5.0483 0.3410 35 1 -1.5490 5.4843 -1.6720 36 1 -4.9923 4.0808 0.1699 37 1 -3.9470 2.3388 2.5309 38 1 -3.4918 3.7569 3.5054 39 1 -5.0132 3.7632 2.5817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492957793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:51 Heat of formation + Delta-G solvation = 11.301064 kcal Electronic energy + Delta-G solvation = -21213.505859 eV Core-core repulsion = 18121.407709 eV Total energy + Delta-G solvation = -3092.098150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11691 -38.84384 -35.44922 -34.22961 -32.54823 -32.42015 -31.10788 -30.16366 -27.24492 -26.88695 -24.47425 -23.06065 -21.97488 -21.44983 -19.57006 -19.17821 -17.47488 -16.42309 -15.96190 -15.67586 -15.04107 -14.96197 -14.40419 -14.24602 -14.05326 -13.49578 -13.16028 -13.07794 -12.70019 -12.59798 -12.43448 -12.05879 -11.96267 -11.51513 -11.39007 -11.25540 -11.01146 -10.84107 -10.37801 -10.18412 -10.06787 -9.66108 -9.23254 -9.13105 -9.06809 -8.60055 -8.50086 -8.26054 -7.76465 -6.13919 -4.23822 0.97165 1.50295 2.08158 3.23727 3.29567 3.30291 3.93793 4.11548 4.14790 4.38368 4.70085 4.76518 5.00132 5.03957 5.17153 5.20211 5.39737 5.50559 5.60130 5.68842 5.79228 5.98950 6.03717 6.15881 6.23496 6.38453 6.45290 6.46729 6.62923 6.66566 7.03006 7.03316 7.19789 7.35757 7.43911 7.60391 7.72552 7.88486 8.16628 8.31964 8.65606 8.76113 9.12669 9.43866 10.91229 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.004659 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.161202 B = 6007.848393 C = 6166.201089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.518 3.482 15 O -0.535 6.535 16 C -0.180 4.180 17 C -0.059 4.059 18 C -0.006 4.006 19 C -0.091 4.091 20 C 0.083 3.917 21 N -0.485 5.485 22 C 0.086 3.914 23 C -0.130 4.130 24 C -0.106 4.106 25 H 0.048 0.952 26 H 0.020 0.980 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.331 6.741 10.687 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.305 3.695 15 O -0.415 6.415 16 C -0.202 4.202 17 C -0.078 4.078 18 C -0.014 4.014 19 C -0.111 4.111 20 C -0.072 4.072 21 N -0.193 5.193 22 C -0.072 4.072 23 C -0.132 4.132 24 C -0.163 4.163 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.287 6.765 9.011 15.258 hybrid contribution 2.003 -0.426 1.068 2.310 sum -8.284 6.338 10.080 14.505 Atomic orbital electron populations 1.21818 0.98292 0.97895 1.01199 1.21929 0.92602 0.99828 1.02184 1.18768 0.94114 0.89159 0.80982 0.93279 1.21192 0.90738 1.39215 1.06299 0.92205 1.24879 0.98561 0.94777 0.95379 1.69888 1.35220 1.37426 1.09342 0.86527 0.84903 0.78308 0.77468 1.20187 1.21116 1.20187 1.46506 1.14364 1.55351 1.18471 1.18375 0.83049 0.80320 0.87769 1.90857 1.50803 1.59767 1.40068 1.23400 0.97452 1.00185 0.99139 1.22118 0.93251 0.96131 0.96350 1.19000 0.92370 0.96192 0.93878 1.22038 1.00019 0.96374 0.92671 1.22427 0.89501 0.97891 0.97378 1.67456 1.11155 1.11522 1.29178 1.22334 0.99679 0.96877 0.88357 1.20891 0.93622 1.01169 0.97568 1.20669 0.99541 1.00995 0.95103 0.93245 0.96054 0.94284 0.88357 0.95157 0.92492 0.78016 0.85266 0.84860 0.85641 0.83339 0.83608 0.91038 0.91650 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.93 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.70 -13.90 5.02 -56.25 -0.28 -14.18 16 14 C 0.52 9.64 5.62 -12.87 -0.07 9.57 16 15 O -0.53 -11.53 9.55 5.22 0.05 -11.48 16 16 C -0.18 -2.47 9.98 -37.46 -0.37 -2.84 16 17 C -0.06 -0.73 8.77 -37.13 -0.33 -1.06 16 18 C -0.01 -0.09 4.34 -104.74 -0.45 -0.55 16 19 C -0.09 -1.49 6.88 -38.95 -0.27 -1.76 16 20 C 0.08 1.37 11.17 -17.62 -0.20 1.17 16 21 N -0.48 -8.13 10.34 -13.35 -0.14 -8.27 16 22 C 0.09 1.25 10.85 -17.62 -0.19 1.06 16 23 C -0.13 -1.81 5.94 -104.00 -0.62 -2.42 16 24 C -0.11 -1.07 9.68 36.01 0.35 -0.72 16 25 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 6.68 8.52 -40.82 -0.35 6.33 16 32 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.13 1.18 7.42 -52.48 -0.39 0.79 16 34 H 0.13 2.05 7.59 -52.49 -0.40 1.66 16 35 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.56 6.79 -51.93 -0.35 0.21 16 39 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 320.59 15.07 4.83 4.83 Total: -1.00 -30.73 320.59 -7.85 -38.58 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.39 Total: 8.53 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -2.53 Total: -9.46 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.21 Total: -46.38 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.05 Total: -11.48 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.73 -7.85 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492957793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.880 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds