Wall clock time and date at job start Mon Mar 30 2020 01:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46857 * 2 1 4 4 H 1.08997 * 109.47593 * 305.00304 * 3 2 1 5 5 C 1.50705 * 109.46853 * 184.99919 * 3 2 1 6 6 H 1.08003 * 119.99595 * 240.00374 * 5 3 2 7 7 C 1.37877 * 119.99907 * 60.00290 * 5 3 2 8 8 N 1.31517 * 119.99672 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99923 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47241 * 60.00263 * 9 7 5 11 11 H 1.48504 * 109.47039 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47422 * 300.00209 * 9 7 5 13 13 N 1.46503 * 109.46777 * 65.00155 * 3 2 1 14 14 C 1.34772 * 120.00149 * 274.99248 * 13 3 2 15 15 O 1.21669 * 119.99937 * 0.02562 * 14 13 3 16 16 C 1.46653 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.34636 * 119.99995 * 173.27770 * 16 14 13 18 18 C 1.47398 * 120.00235 * 349.95344 * 17 16 14 19 19 C 1.40159 * 120.94350 * 310.79433 * 18 17 16 20 20 C 1.37984 * 118.96269 * 179.97438 * 19 18 17 21 21 N 1.31892 * 120.92643 * 0.02562 * 20 19 18 22 22 C 1.31867 * 122.11714 * 0.02562 * 21 20 19 23 23 C 1.38017 * 120.92414 * 359.97438 * 22 21 20 24 24 C 1.50703 * 120.52246 * 180.02562 * 23 22 21 25 25 H 1.08993 * 109.47275 * 60.00216 * 1 2 3 26 26 H 1.09003 * 109.46532 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46895 * 299.99297 * 1 2 3 28 28 H 1.09003 * 109.46779 * 240.00159 * 2 1 3 29 29 H 1.09000 * 109.47034 * 120.00099 * 2 1 3 30 30 H 0.96999 * 119.99371 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00028 * 95.00308 * 13 3 2 32 32 H 1.08008 * 119.99732 * 353.28603 * 16 14 13 33 33 H 1.08006 * 119.99406 * 169.94936 * 17 16 14 34 34 H 1.07995 * 120.52242 * 359.95370 * 19 18 17 35 35 H 1.08001 * 119.53040 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.54027 * 179.97438 * 22 21 20 37 37 H 1.09000 * 109.46896 * 89.99694 * 24 23 22 38 38 H 1.08990 * 109.47562 * 209.99855 * 24 23 22 39 39 H 1.09002 * 109.46809 * 330.00032 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1472 -0.2349 11 1 6.3978 0.2167 -2.6504 12 1 6.4995 2.2815 -1.3820 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6643 1.3670 15 8 -0.3420 2.6319 0.4315 16 6 0.0473 3.3204 2.6200 17 6 -1.1110 4.0030 2.6920 18 6 -1.8803 4.2806 1.4657 19 6 -1.2591 4.8235 0.3327 20 6 -2.0183 5.0666 -0.7936 21 7 -3.3090 4.7960 -0.8124 22 6 -3.9337 4.2859 0.2310 23 6 -3.2536 4.0104 1.3999 24 6 -3.9764 3.4270 2.5866 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0617 -2.9494 31 1 2.2719 2.1231 1.9978 32 1 0.6910 3.2561 3.4850 33 1 -1.4764 4.3470 3.6484 34 1 -0.2028 5.0483 0.3410 35 1 -1.5490 5.4843 -1.6720 36 1 -4.9923 4.0808 0.1699 37 1 -3.9470 2.3388 2.5309 38 1 -3.4918 3.7569 3.5054 39 1 -5.0132 3.7632 2.5817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492957793.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:51 Heat of formation + Delta-G solvation = -8.214800 kcal Electronic energy + Delta-G solvation = -21214.352130 eV Core-core repulsion = 18121.407709 eV Total energy + Delta-G solvation = -3092.944422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34367 -40.29313 -37.12643 -35.49727 -34.26963 -33.63727 -32.85123 -31.45080 -29.01184 -27.99059 -25.85178 -24.81206 -23.26950 -22.72282 -21.36736 -20.60893 -18.90318 -17.95104 -17.35500 -17.21609 -16.63217 -16.28732 -15.93126 -15.62340 -15.38988 -14.68362 -14.67300 -14.38612 -14.22837 -13.76169 -13.56703 -13.48059 -13.32399 -13.18068 -12.93855 -12.88350 -12.66201 -12.44386 -12.19515 -12.05150 -11.60958 -11.27444 -11.05610 -10.63221 -10.48294 -10.33329 -9.78368 -9.51739 -9.40377 -8.16094 -6.33575 -0.15186 0.33712 0.94307 1.44144 1.45588 1.53431 2.37118 2.56006 2.79616 2.96223 3.13677 3.62561 3.70702 3.95809 4.04079 4.12971 4.25297 4.46970 4.52624 4.55544 4.62245 4.74552 4.79332 4.85130 4.92827 5.02756 5.07194 5.12760 5.25099 5.26621 5.39795 5.43142 5.53235 5.58018 5.66502 5.80644 5.90431 5.97867 6.17813 6.75678 7.08899 7.13126 7.34745 7.68176 8.88820 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.026580 B = 0.004659 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.161202 B = 6007.848393 C = 6166.201089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.283 3.717 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.702 5.702 14 C 0.512 3.488 15 O -0.570 6.570 16 C -0.190 4.190 17 C -0.036 4.036 18 C -0.023 4.023 19 C -0.107 4.107 20 C 0.058 3.942 21 N -0.509 5.509 22 C 0.073 3.927 23 C -0.129 4.129 24 C -0.104 4.104 25 H 0.019 0.981 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.402 0.598 32 H 0.171 0.829 33 H 0.184 0.816 34 H 0.114 0.886 35 H 0.150 0.850 36 H 0.174 0.826 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 6.894 13.994 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.159 4.159 3 C 0.179 3.821 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.350 5.350 14 C 0.301 3.699 15 O -0.452 6.452 16 C -0.211 4.211 17 C -0.055 4.055 18 C -0.032 4.032 19 C -0.127 4.127 20 C -0.096 4.096 21 N -0.219 5.219 22 C -0.086 4.086 23 C -0.131 4.131 24 C -0.161 4.161 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.237 0.763 32 H 0.188 0.812 33 H 0.201 0.799 34 H 0.132 0.868 35 H 0.167 0.833 36 H 0.191 0.809 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.535 6.937 12.361 17.660 hybrid contribution 1.954 -0.430 0.011 2.000 sum -8.581 6.507 12.372 16.402 Atomic orbital electron populations 1.21619 0.97040 0.98705 1.00061 1.21772 0.93590 0.99456 1.01039 1.18257 0.93362 0.88926 0.81577 0.98622 1.21573 0.91610 1.38830 1.06600 0.91062 1.25761 1.03194 0.94421 0.95065 1.70054 1.37105 1.38401 1.09891 0.85459 0.79284 0.78441 0.77516 1.18873 1.21374 1.19645 1.46247 1.15581 1.55827 1.17330 1.19234 0.81927 0.79565 0.89193 1.90856 1.51660 1.60772 1.41962 1.23354 0.98806 1.01232 0.97664 1.22572 0.91775 0.94096 0.97025 1.19422 0.93377 0.95867 0.94486 1.22036 0.99500 0.97520 0.93633 1.22554 0.90004 0.99075 0.97957 1.67447 1.11221 1.12603 1.30593 1.22927 1.01065 0.96236 0.88326 1.21348 0.93330 0.99814 0.98569 1.20771 1.00705 1.00537 0.94046 0.96151 0.94115 0.93512 0.91380 0.94169 0.92717 0.76288 0.81154 0.79867 0.86820 0.83258 0.80901 0.91218 0.89365 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.51 71.98 0.61 -4.73 16 2 C -0.12 -5.91 5.45 30.60 0.17 -5.74 16 3 C 0.28 14.28 2.24 44.25 0.10 14.38 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 5 C -0.55 -28.68 8.73 25.60 0.22 -28.46 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -52.77 11.29 21.45 0.24 -52.52 16 9 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 N -0.70 -27.66 5.02 -450.12 -2.26 -29.92 16 14 C 0.51 18.74 5.62 86.44 0.49 19.22 16 15 O -0.57 -25.16 9.55 -4.25 -0.04 -25.20 16 16 C -0.19 -4.59 9.98 23.64 0.24 -4.35 16 17 C -0.04 -0.75 8.77 23.86 0.21 -0.54 16 18 C -0.02 -0.66 4.34 -19.94 -0.09 -0.75 16 19 C -0.11 -3.59 6.88 22.68 0.16 -3.43 16 20 C 0.06 2.03 11.17 84.62 0.95 2.98 16 21 N -0.51 -17.50 10.34 -196.15 -2.03 -19.53 16 22 C 0.07 2.06 10.85 84.63 0.92 2.97 16 23 C -0.13 -3.29 5.94 -19.46 -0.12 -3.41 16 24 C -0.10 -1.68 9.68 71.24 0.69 -0.99 16 25 H 0.02 1.00 7.84 -2.39 -0.02 0.98 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 2.03 5.64 -2.39 -0.01 2.02 16 28 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.40 13.29 8.52 -92.71 -0.79 12.50 16 32 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.18 2.08 7.42 -2.91 -0.02 2.06 16 34 H 0.11 3.94 7.59 -2.91 -0.02 3.92 16 35 H 0.15 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.17 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.04 6.79 -2.39 -0.02 1.02 16 39 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 Total: -1.00 -70.54 320.59 3.20 -67.34 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.27 Total: 27.42 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.99 Total: -11.56 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -4.04 Total: -101.98 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.04 Total: -25.20 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -70.54 3.20 -67.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492957793.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.129 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds