Wall clock time and date at job start Mon Mar 30 2020 01:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21697 * 119.99433 * 0.02562 * 14 13 3 16 16 C 1.46423 * 120.00546 * 180.02562 * 14 13 3 17 17 C 1.34804 * 120.00109 * 179.97438 * 16 14 13 18 18 C 1.47205 * 120.00205 * 180.02562 * 17 16 14 19 19 C 1.40271 * 120.58444 * 359.72217 * 18 17 16 20 20 C 1.38286 * 118.26514 * 179.78163 * 19 18 17 21 21 C 1.38388 * 119.33576 * 0.51333 * 20 19 18 22 22 N 1.31942 * 121.13974 * 359.72689 * 21 20 19 23 23 C 1.31658 * 121.90140 * 359.97438 * 22 21 20 24 24 C 1.50703 * 119.73462 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.08003 * 119.99962 * 0.02562 * 16 14 13 33 33 H 1.08001 * 120.00062 * 359.97438 * 17 16 14 34 34 H 1.08001 * 120.86092 * 0.02562 * 19 18 17 35 35 H 1.08008 * 120.32946 * 180.23838 * 20 19 18 36 36 H 1.08001 * 119.43033 * 179.69666 * 21 20 19 37 37 H 1.09008 * 109.46829 * 270.02302 * 24 23 22 38 38 H 1.08994 * 109.47094 * 30.01982 * 24 23 22 39 39 H 1.09000 * 109.46963 * 150.02480 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3422 2.6318 0.4311 16 6 0.0479 3.3196 2.6178 17 6 -1.1695 3.8871 2.7327 18 6 -1.5586 4.5462 3.9901 19 6 -0.6745 4.5860 5.0784 20 6 -1.0877 5.2216 6.2349 21 6 -2.3514 5.7833 6.2854 22 7 -3.1650 5.7270 5.2482 23 6 -2.8177 5.1389 4.1226 24 6 -3.7857 5.1037 2.9681 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 0.7379 3.3489 3.4481 33 1 -1.8591 3.8588 1.9020 34 1 0.3048 4.1353 5.0134 35 1 -0.4323 5.2753 7.0918 36 1 -2.6776 6.2759 7.1895 37 1 -4.4007 4.2062 3.0369 38 1 -4.4250 5.9857 3.0029 39 1 -3.2315 5.0933 2.0295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493364682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:47 Heat of formation + Delta-G solvation = 1.142814 kcal Electronic energy + Delta-G solvation = -20217.632496 eV Core-core repulsion = 17125.093851 eV Total energy + Delta-G solvation = -3092.538645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43567 -39.00305 -35.36620 -34.44090 -33.28593 -32.39033 -31.18158 -30.28268 -27.74712 -27.01520 -24.84739 -23.13092 -22.31030 -21.35936 -19.55234 -19.19316 -17.72433 -16.72108 -16.34118 -15.91457 -15.21829 -14.91228 -14.71817 -14.42286 -14.29645 -13.69538 -13.51178 -13.11018 -12.69309 -12.63993 -12.37941 -12.29557 -12.09530 -11.55755 -11.34376 -11.25649 -10.97787 -10.88679 -10.76076 -10.32618 -10.19364 -9.69330 -9.68026 -9.62447 -9.12020 -9.04242 -8.51952 -8.40273 -7.81238 -6.14238 -4.23632 0.38336 1.03916 2.04395 3.22150 3.30207 3.32581 3.60562 3.99846 4.00996 4.14137 4.35084 4.53662 4.57718 4.71569 4.86609 5.10968 5.17365 5.31555 5.40002 5.45245 5.48946 5.68959 5.78745 5.89043 5.93764 6.37538 6.39035 6.45331 6.47134 6.50181 6.65697 7.03622 7.19483 7.35485 7.43339 7.60833 7.72391 7.77532 7.88788 8.16521 8.64904 8.75996 9.11053 9.43851 10.91157 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.003481 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.865715 B = 8042.045181 C = 8618.747052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.527 3.473 15 O -0.550 6.550 16 C -0.178 4.178 17 C -0.053 4.053 18 C -0.110 4.110 19 C -0.064 4.064 20 C -0.179 4.179 21 C 0.101 3.899 22 N -0.487 5.487 23 C 0.146 3.854 24 C -0.111 4.111 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 7.542 14.733 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.314 3.686 15 O -0.431 6.431 16 C -0.199 4.199 17 C -0.074 4.074 18 C -0.112 4.112 19 C -0.089 4.089 20 C -0.199 4.199 21 C -0.056 4.056 22 N -0.196 5.196 23 C 0.007 3.993 24 C -0.168 4.168 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.172 0.828 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.624 7.775 13.915 18.620 hybrid contribution 2.329 -0.452 0.398 2.405 sum -7.295 7.322 14.314 17.656 Atomic orbital electron populations 1.21842 0.98325 0.98039 1.01263 1.21933 0.92647 0.99742 1.02289 1.18815 0.94251 0.89234 0.81002 0.93191 1.21272 0.90709 1.38986 1.06324 0.92041 1.24892 0.98629 0.94800 0.95388 1.69905 1.35041 1.37635 1.09312 0.86401 0.84852 0.77775 0.78120 1.19759 1.20873 1.20871 1.46439 1.14419 1.55259 1.18543 1.18163 0.83078 0.79784 0.87552 1.90780 1.51508 1.60418 1.40421 1.23304 0.97568 1.00619 0.98431 1.22188 0.96596 0.93654 0.94942 1.19914 0.95270 1.00940 0.95067 1.21895 0.99432 0.95556 0.92008 1.22057 0.98204 1.00518 0.99126 1.22809 0.90277 0.95868 0.96607 1.67474 1.35617 1.16626 0.99909 1.21565 0.92369 0.91812 0.93530 1.20833 0.97859 1.03677 0.94479 0.95866 0.93115 0.94269 0.95052 0.88264 0.92601 0.77901 0.86046 0.84059 0.84279 0.84600 0.82755 0.89942 0.90295 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.67 2.24 -69.08 -0.15 6.52 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.49 11.29 55.43 0.63 -23.86 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.70 -14.22 5.02 -56.33 -0.28 -14.50 16 14 C 0.53 10.22 6.31 -12.97 -0.08 10.14 16 15 O -0.55 -12.51 13.36 5.19 0.07 -12.44 16 16 C -0.18 -2.58 9.42 -37.51 -0.35 -2.94 16 17 C -0.05 -0.72 8.89 -37.16 -0.33 -1.05 16 18 C -0.11 -1.32 5.88 -104.91 -0.62 -1.94 16 19 C -0.06 -0.65 9.52 -38.80 -0.37 -1.02 16 20 C -0.18 -1.57 10.09 -39.51 -0.40 -1.97 16 21 C 0.10 0.97 11.17 -17.45 -0.19 0.77 16 22 N -0.49 -5.82 10.26 -9.07 -0.09 -5.92 16 23 C 0.15 1.74 6.83 -82.08 -0.56 1.18 16 24 C -0.11 -1.10 9.69 36.01 0.35 -0.75 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 27 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 6.79 8.52 -40.82 -0.35 6.44 16 32 H 0.12 1.39 6.14 -52.48 -0.32 1.06 16 33 H 0.14 1.97 5.84 -52.49 -0.31 1.67 16 34 H 0.14 1.18 6.29 -52.49 -0.33 0.85 16 35 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.81 6.32 -51.93 -0.33 0.48 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -30.93 323.68 -7.88 -38.80 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.12 Total: 7.25 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.94 Total: -9.59 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.25 Total: -44.27 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.07 Total: -12.44 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.93 -7.88 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493364682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.943 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds