Wall clock time and date at job start Mon Mar 30 2020 01:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21697 * 119.99433 * 0.02562 * 14 13 3 16 16 C 1.46423 * 120.00546 * 180.02562 * 14 13 3 17 17 C 1.34804 * 120.00109 * 179.97438 * 16 14 13 18 18 C 1.47205 * 120.00205 * 180.02562 * 17 16 14 19 19 C 1.40271 * 120.58444 * 359.72217 * 18 17 16 20 20 C 1.38286 * 118.26514 * 179.78163 * 19 18 17 21 21 C 1.38388 * 119.33576 * 0.51333 * 20 19 18 22 22 N 1.31942 * 121.13974 * 359.72689 * 21 20 19 23 23 C 1.31658 * 121.90140 * 359.97438 * 22 21 20 24 24 C 1.50703 * 119.73462 * 180.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.08003 * 119.99962 * 0.02562 * 16 14 13 33 33 H 1.08001 * 120.00062 * 359.97438 * 17 16 14 34 34 H 1.08001 * 120.86092 * 0.02562 * 19 18 17 35 35 H 1.08008 * 120.32946 * 180.23838 * 20 19 18 36 36 H 1.08001 * 119.43033 * 179.69666 * 21 20 19 37 37 H 1.09008 * 109.46829 * 270.02302 * 24 23 22 38 38 H 1.08994 * 109.47094 * 30.01982 * 24 23 22 39 39 H 1.09000 * 109.46963 * 150.02480 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3422 2.6318 0.4311 16 6 0.0479 3.3196 2.6178 17 6 -1.1695 3.8871 2.7327 18 6 -1.5586 4.5462 3.9901 19 6 -0.6745 4.5860 5.0784 20 6 -1.0877 5.2216 6.2349 21 6 -2.3514 5.7833 6.2854 22 7 -3.1650 5.7270 5.2482 23 6 -2.8177 5.1389 4.1226 24 6 -3.7857 5.1037 2.9681 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 0.7379 3.3489 3.4481 33 1 -1.8591 3.8588 1.9020 34 1 0.3048 4.1353 5.0134 35 1 -0.4323 5.2753 7.0918 36 1 -2.6776 6.2759 7.1895 37 1 -4.4007 4.2062 3.0369 38 1 -4.4250 5.9857 3.0029 39 1 -3.2315 5.0933 2.0295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493364682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:47 Heat of formation + Delta-G solvation = -18.306202 kcal Electronic energy + Delta-G solvation = -20218.475869 eV Core-core repulsion = 17125.093851 eV Total energy + Delta-G solvation = -3093.382018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27662 -40.56955 -37.06719 -35.59660 -34.28735 -34.03653 -32.89038 -31.43191 -29.07695 -28.39071 -25.98958 -24.86712 -23.32974 -22.55894 -21.33052 -20.58524 -19.04804 -18.04503 -17.43948 -17.18883 -16.89522 -16.20159 -15.95466 -15.88136 -15.50194 -14.89200 -14.65463 -14.45145 -14.19179 -13.83536 -13.49152 -13.41346 -13.23443 -13.17358 -13.10562 -12.85106 -12.70446 -12.27309 -12.13798 -12.05047 -11.79798 -11.57479 -11.03730 -10.77222 -10.53218 -10.46648 -10.44334 -9.66740 -9.27537 -8.15754 -6.32962 -0.55267 0.27770 0.99885 1.44443 1.45765 1.57356 2.36600 2.47323 2.68525 2.89744 3.13999 3.36339 3.68583 3.78034 3.81373 4.06250 4.23977 4.29117 4.49947 4.57970 4.61194 4.67482 4.69545 4.72423 4.77284 4.94641 5.06414 5.12475 5.18747 5.24090 5.36625 5.44893 5.46594 5.57379 5.63821 5.74457 5.81012 5.95500 6.17761 6.75597 6.98826 7.02012 7.34328 7.60107 8.89866 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.003481 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.865715 B = 8042.045181 C = 8618.747052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.699 5.699 14 C 0.525 3.475 15 O -0.593 6.593 16 C -0.194 4.194 17 C -0.028 4.028 18 C -0.134 4.134 19 C -0.063 4.063 20 C -0.174 4.174 21 C 0.100 3.900 22 N -0.512 5.512 23 C 0.134 3.866 24 C -0.112 4.112 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.158 0.842 33 H 0.129 0.871 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.425 8.241 17.789 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.346 5.346 14 C 0.314 3.686 15 O -0.477 6.477 16 C -0.215 4.215 17 C -0.048 4.048 18 C -0.136 4.136 19 C -0.088 4.088 20 C -0.193 4.193 21 C -0.056 4.056 22 N -0.222 5.222 23 C -0.004 4.004 24 C -0.169 4.169 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.175 0.825 33 H 0.146 0.854 34 H 0.176 0.824 35 H 0.189 0.811 36 H 0.202 0.798 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.738 8.487 17.013 20.925 hybrid contribution 1.920 -0.565 -0.451 2.052 sum -6.818 7.921 16.563 19.585 Atomic orbital electron populations 1.21679 0.97003 0.99100 1.00287 1.21783 0.93744 0.99157 1.01301 1.18381 0.93674 0.89202 0.81433 0.98380 1.21623 0.91429 1.38814 1.06710 0.90957 1.25780 1.03320 0.94411 0.95053 1.70059 1.36988 1.38435 1.09864 0.85320 0.79143 0.77803 0.78202 1.18374 1.20482 1.21102 1.46172 1.15403 1.55481 1.17579 1.18878 0.82034 0.78922 0.88718 1.90759 1.52547 1.61931 1.42454 1.23042 0.98958 1.02297 0.97172 1.22227 0.95674 0.91646 0.95265 1.19853 0.96178 1.02546 0.95060 1.22233 0.99821 0.95027 0.91750 1.22441 0.98236 0.99006 0.99604 1.23454 0.90405 0.94916 0.96828 1.67530 1.36713 1.17440 1.00502 1.21780 0.92680 0.91840 0.94083 1.20861 0.97831 1.04242 0.93992 0.93633 0.95550 0.93738 0.94016 0.91027 0.92629 0.76037 0.82491 0.85368 0.82357 0.81100 0.79764 0.89379 0.89705 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.98 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.80 16 3 C 0.28 14.14 2.24 44.25 0.10 14.24 16 4 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 5 C -0.55 -28.75 8.73 25.60 0.22 -28.52 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -52.24 11.29 21.45 0.24 -52.00 16 9 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 10 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.70 -28.46 5.02 -450.34 -2.26 -30.72 16 14 C 0.52 20.54 6.31 86.37 0.54 21.08 16 15 O -0.59 -28.03 13.36 -4.34 -0.06 -28.09 16 16 C -0.19 -5.40 9.42 23.61 0.22 -5.17 16 17 C -0.03 -0.72 8.89 23.84 0.21 -0.51 16 18 C -0.13 -3.00 5.88 -20.05 -0.12 -3.12 16 19 C -0.06 -1.09 9.52 22.78 0.22 -0.87 16 20 C -0.17 -2.35 10.09 22.32 0.23 -2.12 16 21 C 0.10 1.59 11.17 84.71 0.95 2.54 16 22 N -0.51 -11.26 10.26 -182.61 -1.87 -13.13 16 23 C 0.13 3.04 6.83 42.96 0.29 3.33 16 24 C -0.11 -2.20 9.69 71.24 0.69 -1.51 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 27 H 0.04 1.94 5.64 -2.38 -0.01 1.93 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 30 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.40 13.70 8.52 -92.71 -0.79 12.91 16 32 H 0.16 3.13 6.14 -2.91 -0.02 3.11 16 33 H 0.13 3.67 5.84 -2.91 -0.02 3.65 16 34 H 0.16 2.04 6.29 -2.91 -0.02 2.02 16 35 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.58 6.32 -2.39 -0.02 1.57 16 Total: -1.00 -69.21 323.68 3.14 -66.06 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.28 Total: 24.28 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 4.78 Total: -10.19 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -3.89 Total: -95.85 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.06 Total: -28.09 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -69.21 3.14 -66.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493364682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.757 kcal (2) G-P(sol) polarization free energy of solvation -69.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds