Wall clock time and date at job start Mon Mar 30 2020 01:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46940 * 2 1 4 4 N 1.46500 * 109.47004 * 179.97438 * 3 2 1 5 5 C 1.36635 * 120.00148 * 264.61580 * 4 3 2 6 6 H 1.08003 * 120.00301 * 141.64448 * 5 4 3 7 7 C 1.39191 * 120.00183 * 321.64079 * 5 4 3 8 8 N 1.31279 * 119.99557 * 339.45246 * 7 5 4 9 9 Si 1.86798 * 120.00285 * 159.44739 * 7 5 4 10 10 H 1.48502 * 109.46931 * 90.00346 * 9 7 5 11 11 H 1.48501 * 109.47265 * 210.00581 * 9 7 5 12 12 H 1.48506 * 109.47144 * 330.00426 * 9 7 5 13 13 C 1.34775 * 120.00039 * 84.61470 * 4 3 2 14 14 O 1.21736 * 119.99965 * 180.02562 * 13 4 3 15 15 C 1.46415 * 119.99939 * 359.97438 * 13 4 3 16 16 C 1.34837 * 120.00047 * 179.97438 * 15 13 4 17 17 C 1.47320 * 119.99924 * 179.97438 * 16 15 13 18 18 C 1.40212 * 120.95216 * 0.02562 * 17 16 15 19 19 C 1.37949 * 118.96169 * 179.97438 * 18 17 16 20 20 N 1.31920 * 120.92845 * 0.02562 * 19 18 17 21 21 C 1.31892 * 122.12375 * 359.97438 * 20 19 18 22 22 C 1.37981 * 120.92884 * 0.02562 * 21 20 19 23 23 C 1.50704 * 120.51916 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47138 * 299.99858 * 1 2 3 25 25 H 1.09000 * 109.46669 * 59.99572 * 1 2 3 26 26 H 1.08993 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47138 * 240.00142 * 2 1 3 28 28 H 1.08997 * 109.46730 * 119.99904 * 2 1 3 29 29 H 1.09006 * 109.46797 * 60.00254 * 3 2 1 30 30 H 1.08993 * 109.47780 * 300.00120 * 3 2 1 31 31 H 0.97006 * 120.00068 * 179.97438 * 8 7 5 32 32 H 1.08005 * 119.99956 * 0.02562 * 15 13 4 33 33 H 1.07996 * 120.00159 * 0.02562 * 16 15 13 34 34 H 1.08003 * 120.51885 * 359.96044 * 18 17 16 35 35 H 1.07998 * 119.53503 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.52972 * 179.72034 * 21 20 19 37 37 H 1.09004 * 109.47255 * 89.99928 * 23 22 21 38 38 H 1.09004 * 109.47347 * 210.00169 * 23 22 21 39 39 H 1.09000 * 109.46845 * 329.99837 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1877 1.5537 1.1789 6 1 5.0929 0.9854 1.3344 7 6 3.7168 2.3996 2.1790 8 7 2.8870 3.3717 1.8795 9 14 4.2653 2.1513 3.9473 10 1 5.4950 2.9445 4.2001 11 1 3.1891 2.5997 4.8671 12 1 4.5479 0.7121 4.1805 13 6 4.1794 1.3328 -1.1611 14 8 5.3968 1.3324 -1.1605 15 6 3.4479 1.2131 -2.4237 16 6 4.1225 1.1038 -3.5861 17 6 3.3864 0.9827 -4.8564 18 6 1.9845 0.9794 -4.8801 19 6 1.3372 0.8644 -6.0928 20 7 2.0183 0.7583 -7.2176 21 6 3.3370 0.7570 -7.2415 22 6 4.0675 0.8675 -6.0761 23 6 5.5741 0.8645 -6.1141 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 2.5584 3.9610 2.5765 32 1 2.3678 1.2130 -2.4242 33 1 5.2025 1.1042 -3.5857 34 1 1.4203 1.0654 -3.9632 35 1 0.2576 0.8605 -6.1217 36 1 3.8521 0.6631 -8.1860 37 1 5.9369 1.8868 -6.2201 38 1 5.9600 0.4360 -5.1891 39 1 5.9149 0.2683 -6.9606 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493825336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:20 Heat of formation + Delta-G solvation = -8.941221 kcal Electronic energy + Delta-G solvation = -20649.919065 eV Core-core repulsion = 17556.943143 eV Total energy + Delta-G solvation = -3092.975921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.22263 -40.45278 -37.25480 -35.88773 -34.63374 -33.84800 -33.05861 -31.46838 -28.31642 -27.78607 -26.73892 -25.37331 -23.27619 -22.53074 -22.06914 -19.94071 -18.98920 -18.48194 -17.42176 -17.10762 -16.72295 -16.12140 -15.87047 -15.58618 -15.38795 -15.25532 -14.84793 -14.30277 -14.22625 -13.98653 -13.73733 -13.58371 -13.43851 -13.23944 -13.04191 -12.76433 -12.61776 -12.36406 -12.17288 -12.05616 -12.00402 -11.84400 -11.56995 -10.94289 -10.50442 -10.44526 -9.94521 -9.65264 -9.41878 -8.41608 -6.10479 -0.50574 0.19051 1.07622 1.40100 1.40352 1.52893 2.25271 2.48192 2.90333 2.99153 3.06196 3.54847 3.63449 3.76118 3.92353 4.02677 4.06564 4.19372 4.26700 4.34264 4.56074 4.58283 4.70480 4.74276 4.77146 4.86773 4.89626 4.95557 5.04853 5.13524 5.25433 5.28183 5.35439 5.37948 5.46470 5.53208 5.57711 5.76015 6.17173 6.50298 7.01119 7.12320 7.38346 8.01893 8.61158 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.024382 B = 0.004498 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.119044 B = 6223.979831 C = 7038.728441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.104 3.896 4 N -0.435 5.435 5 C -0.347 4.347 6 H 0.064 0.936 7 C 0.009 3.991 8 N -0.881 5.881 9 Si 0.982 3.018 10 H -0.277 1.277 11 H -0.264 1.264 12 H -0.266 1.266 13 C 0.458 3.542 14 O -0.638 6.638 15 C -0.162 4.162 16 C -0.066 4.066 17 C -0.032 4.032 18 C -0.163 4.163 19 C 0.089 3.911 20 N -0.503 5.503 21 C 0.094 3.906 22 C -0.128 4.128 23 C -0.115 4.115 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.277 0.723 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.150 0.850 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.458 -5.017 -12.075 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.019 4.019 4 N -0.150 5.150 5 C -0.475 4.475 6 H 0.082 0.918 7 C -0.195 4.195 8 N -0.517 5.517 9 Si 0.804 3.196 10 H -0.203 1.203 11 H -0.188 1.188 12 H -0.190 1.190 13 C 0.251 3.749 14 O -0.528 6.528 15 C -0.184 4.184 16 C -0.086 4.086 17 C -0.040 4.040 18 C -0.182 4.182 19 C -0.066 4.066 20 N -0.212 5.212 21 C -0.063 4.063 22 C -0.129 4.129 23 C -0.172 4.172 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.167 0.833 35 H 0.201 0.799 36 H 0.200 0.800 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.497 -4.923 -12.707 15.096 hybrid contribution 0.992 0.293 1.995 2.247 sum -5.505 -4.630 -10.711 12.902 Atomic orbital electron populations 1.21641 0.92940 1.02539 1.02407 1.21908 0.97687 0.96216 1.01311 1.21765 0.79794 0.96918 1.03384 1.43619 1.06237 1.60595 1.04576 1.19383 1.10560 1.25410 0.92188 0.91819 1.26186 0.96694 0.92545 1.04072 1.69937 1.32469 1.13975 1.35354 0.85134 0.78288 0.79013 0.77118 1.20328 1.18796 1.19021 1.19057 0.87444 0.82979 0.85442 1.90579 1.15872 1.58429 1.87875 1.23240 1.00954 1.02306 0.91862 1.22182 0.99853 0.96102 0.90494 1.19383 0.93913 0.98105 0.92588 1.22624 0.93694 1.00821 1.01105 1.23059 1.01652 0.95134 0.86797 1.67638 1.09735 1.12570 1.31233 1.22989 0.89418 0.95609 0.98248 1.21367 0.98737 0.99936 0.92911 1.20840 0.88875 1.03631 1.03899 0.93025 0.91219 0.91130 0.92363 0.93570 0.89609 0.91586 0.91301 0.83562 0.85911 0.83264 0.79891 0.80010 0.90040 0.92051 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.76 16 2 C -0.13 -4.54 6.11 30.60 0.19 -4.36 16 3 C 0.10 4.41 4.56 86.38 0.39 4.81 16 4 N -0.43 -22.58 2.51 -640.39 -1.61 -24.19 16 5 C -0.35 -19.82 8.88 84.17 0.75 -19.07 16 6 H 0.06 3.89 7.78 -2.91 -0.02 3.87 16 7 C 0.01 0.48 4.91 85.00 0.42 0.90 16 8 N -0.88 -46.92 11.55 21.70 0.25 -46.67 16 9 Si 0.98 41.72 29.60 68.60 2.03 43.75 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 C 0.46 23.58 7.52 86.37 0.65 24.23 16 14 O -0.64 -37.99 16.11 -4.46 -0.07 -38.06 16 15 C -0.16 -6.29 8.14 23.62 0.19 -6.09 16 16 C -0.07 -2.27 8.94 23.88 0.21 -2.06 16 17 C -0.03 -0.90 5.90 -19.94 -0.12 -1.02 16 18 C -0.16 -3.94 9.49 22.68 0.22 -3.72 16 19 C 0.09 1.94 11.17 84.61 0.94 2.88 16 20 N -0.50 -12.02 10.34 -196.17 -2.03 -14.04 16 21 C 0.09 2.02 10.85 84.62 0.92 2.94 16 22 C -0.13 -3.05 5.94 -19.45 -0.12 -3.16 16 23 C -0.12 -2.29 9.59 71.24 0.68 -1.61 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.91 7.56 -2.39 -0.02 1.89 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.09 4.02 5.62 -2.38 -0.01 4.01 16 30 H 0.07 2.51 6.42 -2.39 -0.02 2.50 16 31 H 0.28 13.65 8.31 -92.70 -0.77 12.88 16 32 H 0.15 4.72 4.25 -2.91 -0.01 4.71 16 33 H 0.12 4.58 5.96 -2.91 -0.02 4.56 16 34 H 0.15 3.17 6.30 -2.91 -0.02 3.15 16 35 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.41 6.45 -2.38 -0.02 1.40 16 39 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -70.99 326.92 5.67 -65.32 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 1.05 Total: 21.99 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 6.04 Total: -8.10 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.39 Total: -84.91 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.07 Total: -38.06 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -70.99 5.67 -65.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493825336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.382 kcal (2) G-P(sol) polarization free energy of solvation -70.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds