Wall clock time and date at job start Mon Mar 30 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.21625 * 2 1 4 4 C 1.54476 * 110.24443 * 237.97558 * 2 1 3 5 5 C 1.54635 * 101.76109 * 215.58439 * 4 2 1 6 6 H 1.09000 * 110.48718 * 143.61139 * 5 4 2 7 7 N 1.46903 * 110.48441 * 266.11652 * 5 4 2 8 8 C 1.46897 * 111.00057 * 205.00050 * 7 5 4 9 9 C 1.50696 * 109.47070 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00493 * 359.97438 * 9 8 7 11 11 C 1.37884 * 120.00056 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99884 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00156 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47390 * 90.00038 * 13 11 9 15 15 H 1.48508 * 109.47460 * 210.00135 * 13 11 9 16 16 H 1.48507 * 109.47384 * 330.00179 * 13 11 9 17 17 C 1.51282 * 104.25902 * 24.58005 * 5 4 2 18 18 O 1.21290 * 124.94515 * 164.00792 * 17 5 4 19 19 N 1.34413 * 110.11370 * 344.14595 * 17 5 4 20 20 C 1.39926 * 124.35093 * 179.43458 * 19 17 5 21 21 C 1.38869 * 120.07116 * 292.93333 * 20 19 17 22 22 C 1.38110 * 119.93037 * 180.22888 * 21 20 19 23 23 C 1.38282 * 120.06845 * 0.07074 * 22 21 20 24 24 C 1.38284 * 120.14357 * 359.94998 * 23 22 21 25 25 C 1.38106 * 120.07135 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47007 * 302.83492 * 1 2 3 27 27 H 1.08997 * 109.47048 * 62.83498 * 1 2 3 28 28 H 1.09005 * 109.47153 * 182.83808 * 1 2 3 29 29 H 1.09000 * 110.97026 * 333.70185 * 4 2 1 30 30 H 1.08994 * 110.96947 * 97.47005 * 4 2 1 31 31 H 1.00894 * 111.00402 * 328.95914 * 7 5 4 32 32 H 1.08997 * 109.47319 * 300.00439 * 8 7 5 33 33 H 1.09003 * 109.47056 * 60.00587 * 8 7 5 34 34 H 0.96999 * 119.99842 * 179.97438 * 12 11 9 35 35 H 1.07998 * 120.03504 * 0.25581 * 21 20 19 36 36 H 1.07995 * 119.96781 * 180.02562 * 22 21 20 37 37 H 1.08005 * 119.92883 * 179.97438 * 23 22 21 38 38 H 1.08002 * 119.96667 * 180.02562 * 24 23 22 39 39 H 1.07997 * 120.03886 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0645 -0.7686 -1.2288 5 6 3.3287 -1.4463 -0.6512 6 1 3.4605 -2.4386 -1.0826 7 7 4.5156 -0.6173 -0.8998 8 6 5.7351 -1.4361 -0.9193 9 6 6.9290 -0.5531 -1.1757 10 1 6.7954 0.5100 -1.3111 11 6 8.1922 -1.1024 -1.2375 12 7 8.3550 -2.3971 -1.0731 13 14 9.6722 -0.0078 -1.5546 14 1 10.2163 0.4763 -0.2605 15 1 10.7166 -0.7828 -2.2717 16 1 9.2606 1.1533 -2.3839 17 6 3.0560 -1.5394 0.8340 18 8 3.6657 -2.2452 1.6094 19 7 2.0379 -0.7282 1.1687 20 6 1.5311 -0.5912 2.4658 21 6 0.8757 -1.6544 3.0727 22 6 0.3725 -1.5144 4.3512 23 6 0.5196 -0.3166 5.0264 24 6 1.1714 0.7442 4.4247 25 6 1.6773 0.6105 3.1466 26 1 -0.3633 0.5572 0.8635 27 1 -0.3633 0.4692 -0.9143 28 1 -0.3634 -1.0265 0.0509 29 1 1.3434 -1.5124 -1.5676 30 1 2.3236 -0.0828 -2.0353 31 1 4.4180 -0.0936 -1.7567 32 1 5.8528 -1.9355 0.0423 33 1 5.6587 -2.1829 -1.7097 34 1 9.2436 -2.7836 -1.1169 35 1 0.7599 -2.5899 2.5456 36 1 -0.1370 -2.3410 4.8239 37 1 0.1249 -0.2095 6.0260 38 1 1.2850 1.6783 4.9548 39 1 2.1866 1.4391 2.6773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565536089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:56 Heat of formation + Delta-G solvation = -24.434284 kcal Electronic energy + Delta-G solvation = -20968.259514 eV Core-core repulsion = 17874.611763 eV Total energy + Delta-G solvation = -3093.647751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.07451 -39.69822 -37.95699 -36.80138 -34.71674 -33.13543 -31.91243 -31.13864 -29.90255 -27.79206 -25.36184 -24.11273 -23.75768 -23.43966 -22.06693 -20.58687 -18.73009 -18.42726 -17.52308 -17.16025 -16.73713 -16.59692 -16.24902 -15.62307 -15.55187 -15.00166 -14.71083 -14.56578 -14.36562 -14.32444 -13.74709 -13.60421 -13.59303 -13.28893 -12.92945 -12.83564 -12.68330 -12.46731 -12.31847 -12.16254 -12.01483 -11.82398 -11.31728 -11.08608 -10.69741 -10.31659 -9.93102 -9.45890 -9.24697 -8.24124 -6.37082 0.26199 0.40958 1.38923 1.42569 1.43615 1.54056 1.90814 2.38717 2.74818 3.09329 3.34699 3.44100 3.60350 3.84467 3.96849 4.02607 4.15403 4.23144 4.29706 4.40678 4.49991 4.56811 4.63339 4.75961 4.84014 4.95773 5.02992 5.05305 5.08776 5.19453 5.29475 5.40631 5.48154 5.53831 5.55440 5.69752 5.93848 5.99319 6.09827 6.29379 6.63940 6.84399 7.14218 7.33927 8.88233 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.004370 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.667130 B = 6406.081407 C = 6853.871418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 H 0.091 0.909 4 C -0.113 4.113 5 C 0.049 3.951 6 H 0.060 0.940 7 N -0.665 5.665 8 C 0.211 3.789 9 C -0.536 4.536 10 H 0.072 0.928 11 C -0.003 4.003 12 N -0.937 5.937 13 Si 0.979 3.021 14 H -0.278 1.278 15 H -0.280 1.280 16 H -0.254 1.254 17 C 0.525 3.475 18 O -0.576 6.576 19 N -0.566 5.566 20 C 0.130 3.870 21 C -0.135 4.135 22 C -0.111 4.111 23 C -0.121 4.121 24 C -0.108 4.108 25 C -0.136 4.136 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.354 0.646 32 H -0.015 1.015 33 H -0.032 1.032 34 H 0.265 0.735 35 H 0.110 0.890 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.167 8.100 4.641 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.109 0.891 4 C -0.150 4.150 5 C -0.065 4.065 6 H 0.078 0.922 7 N -0.300 5.300 8 C 0.083 3.917 9 C -0.574 4.574 10 H 0.090 0.910 11 C -0.201 4.201 12 N -0.577 5.577 13 Si 0.803 3.197 14 H -0.204 1.204 15 H -0.206 1.206 16 H -0.178 1.178 17 C 0.313 3.687 18 O -0.453 6.453 19 N -0.296 5.296 20 C 0.041 3.959 21 C -0.155 4.155 22 C -0.129 4.129 23 C -0.139 4.139 24 C -0.126 4.126 25 C -0.156 4.156 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.175 0.825 32 H 0.003 0.997 33 H -0.014 1.014 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.681 7.787 5.716 23.736 hybrid contribution 1.287 -0.761 -0.812 1.701 sum -20.394 7.026 4.905 22.121 Atomic orbital electron populations 1.22033 0.91484 1.02868 1.04034 1.22003 0.96327 0.96103 0.82489 0.89120 1.23006 0.93895 1.00680 0.97448 1.22245 0.94046 0.98345 0.91865 0.92228 1.60251 1.00281 1.27058 1.42418 1.19236 0.87568 0.91622 0.93261 1.21520 0.91905 0.95011 1.48944 0.90981 1.26070 1.02719 0.96568 0.94734 1.70140 1.23819 1.12911 1.50828 0.85243 0.77567 0.78535 0.78375 1.20358 1.20575 1.17811 1.21484 0.78067 0.77642 0.91478 1.90660 1.52800 1.43192 1.58652 1.45904 1.33542 1.42786 1.07373 1.17764 0.97716 0.95511 0.84947 1.21354 0.98695 0.98085 0.97355 1.21352 0.99245 0.99082 0.93219 1.21585 0.98747 0.92445 1.01122 1.21397 0.97022 1.00536 0.93670 1.21430 1.00851 0.97247 0.96047 0.92248 0.87943 0.92342 0.87087 0.86038 0.82456 0.99675 1.01423 0.92638 0.87192 0.83327 0.82507 0.82877 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.86 71.98 0.64 -1.64 16 2 C 0.13 2.96 3.86 45.44 0.18 3.14 16 3 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.11 -2.51 6.35 31.65 0.20 -2.30 16 5 C 0.05 1.81 3.27 44.91 0.15 1.96 16 6 H 0.06 2.39 7.82 -2.39 -0.02 2.37 16 7 N -0.66 -29.03 6.33 -495.61 -3.14 -32.17 16 8 C 0.21 12.07 5.29 85.56 0.45 12.52 16 9 C -0.54 -31.60 9.32 25.60 0.24 -31.36 16 10 H 0.07 4.01 7.81 -2.91 -0.02 3.99 16 11 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 12 N -0.94 -59.73 13.29 21.45 0.28 -59.45 16 13 Si 0.98 45.50 29.54 68.60 2.03 47.53 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.25 -10.96 7.11 99.48 0.71 -10.25 16 17 C 0.52 22.17 7.53 87.90 0.66 22.84 16 18 O -0.58 -30.83 17.65 -3.06 -0.05 -30.88 16 19 N -0.57 -18.13 2.82 -605.48 -1.71 -19.83 16 20 C 0.13 3.92 4.51 38.15 0.17 4.09 16 21 C -0.14 -3.77 9.88 22.39 0.22 -3.54 16 22 C -0.11 -2.34 10.04 22.25 0.22 -2.12 16 23 C -0.12 -2.19 10.04 22.29 0.22 -1.97 16 24 C -0.11 -2.16 10.04 22.25 0.22 -1.93 16 25 C -0.14 -3.55 9.94 22.39 0.22 -3.32 16 26 H 0.06 0.96 7.87 -2.39 -0.02 0.94 16 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.11 1.93 7.91 -2.39 -0.02 1.91 16 30 H 0.12 2.11 7.56 -2.39 -0.02 2.10 16 31 H 0.35 13.21 8.05 -89.70 -0.72 12.49 16 32 H -0.01 -1.01 8.09 -2.39 -0.02 -1.03 16 33 H -0.03 -1.92 8.08 -2.39 -0.02 -1.94 16 34 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.11 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.12 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -82.27 331.55 1.99 -80.27 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.32 Total: 17.88 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.26 Total: -3.36 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -4.56 Total: -111.45 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.05 Total: -30.88 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -82.27 1.99 -80.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565536089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.839 kcal (2) G-P(sol) polarization free energy of solvation -82.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds