Wall clock time and date at job start Mon Mar 30 2020 01:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47197 * 2 1 4 4 H 1.09003 * 109.47250 * 185.15612 * 3 2 1 5 5 C 1.50696 * 109.46881 * 305.15830 * 3 2 1 6 6 H 1.08012 * 119.99736 * 120.00065 * 5 3 2 7 7 C 1.37870 * 120.00594 * 300.00094 * 5 3 2 8 8 N 1.31519 * 119.99715 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00411 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46862 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47221 * 119.99378 * 9 7 5 12 12 H 1.48496 * 109.47150 * 239.99719 * 9 7 5 13 13 N 1.46905 * 109.46958 * 65.16065 * 3 2 1 14 14 C 1.46899 * 110.99623 * 85.89797 * 13 3 2 15 15 C 1.53000 * 109.46630 * 174.84752 * 14 13 3 16 16 C 1.50703 * 109.47269 * 180.02562 * 15 14 13 17 17 N 1.29742 * 126.29601 * 90.02276 * 16 15 14 18 18 O 1.41347 * 109.73807 * 180.02562 * 17 16 15 19 19 C 1.34816 * 109.33924 * 359.97438 * 18 17 16 20 20 C 1.38982 * 133.46322 * 180.02562 * 19 18 17 21 21 C 1.37805 * 119.79733 * 179.21511 * 20 19 18 22 22 C 1.38779 * 120.59948 * 0.68951 * 21 20 19 23 23 C 1.36624 * 120.51523 * 359.54229 * 22 21 20 24 24 C 1.39689 * 119.79278 * 0.02562 * 23 22 21 25 25 H 1.08994 * 109.46902 * 174.84279 * 1 2 3 26 26 H 1.08998 * 109.47160 * 54.84902 * 1 2 3 27 27 H 1.08992 * 109.46770 * 294.84571 * 1 2 3 28 28 H 1.08998 * 109.47172 * 120.00311 * 2 1 3 29 29 H 1.09008 * 109.47334 * 240.00074 * 2 1 3 30 30 H 0.96996 * 119.99781 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99774 * 321.94789 * 13 3 2 32 32 H 1.08995 * 109.47219 * 294.84452 * 14 13 3 33 33 H 1.08999 * 109.47280 * 54.85128 * 14 13 3 34 34 H 1.09007 * 109.47640 * 300.00130 * 15 14 13 35 35 H 1.09000 * 109.47720 * 60.00124 * 15 14 13 36 36 H 1.08000 * 120.09588 * 359.97045 * 20 19 18 37 37 H 1.07995 * 119.69808 * 180.23138 * 21 20 19 38 38 H 1.08007 * 119.74537 * 179.55979 * 22 21 20 39 39 H 1.08000 * 120.10479 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1262 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1616 6 1 0.8269 3.0628 -0.9839 7 6 1.6611 1.7560 -2.4511 8 7 2.4034 0.6920 -2.6675 9 14 0.9131 2.6815 -3.8910 10 1 0.1267 3.8345 -3.3835 11 1 1.9963 3.1734 -4.7798 12 1 0.0211 1.7721 -4.6543 13 7 1.6547 2.0981 1.2569 14 6 2.6433 1.8366 2.3116 15 6 2.2773 2.6367 3.5632 16 6 3.2917 2.3690 4.6451 17 7 4.3861 3.0341 4.8534 18 8 5.0759 2.4842 5.9578 19 6 4.3763 1.4406 6.4466 20 6 4.5855 0.5591 7.5005 21 6 3.6550 -0.4216 7.7679 22 6 2.5160 -0.5470 6.9851 23 6 2.2940 0.3064 5.9415 24 6 3.2203 1.3131 5.6591 25 1 -0.3633 -1.0235 -0.0924 26 1 -0.3633 0.5916 -0.8402 27 1 -0.3632 0.4318 0.9325 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 2.5620 0.3877 -3.5747 31 1 0.7321 1.8104 1.5467 32 1 2.6484 0.7728 2.5490 33 1 3.6323 2.1363 1.9650 34 1 2.2721 3.7006 3.3259 35 1 1.2883 2.3371 3.9099 36 1 5.4685 0.6501 8.1156 37 1 3.8173 -1.1034 8.5895 38 1 1.7992 -1.3252 7.2026 39 1 1.4051 0.2031 5.3369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594008710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:22 Heat of formation + Delta-G solvation = 53.568241 kcal Electronic energy + Delta-G solvation = -20400.515465 eV Core-core repulsion = 17310.250157 eV Total energy + Delta-G solvation = -3090.265308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.84472 -37.89563 -36.94980 -34.95147 -32.71589 -31.14608 -30.66101 -30.21595 -28.72155 -26.06690 -23.56460 -23.29911 -22.84207 -22.49610 -20.15060 -19.35934 -17.67112 -17.20107 -16.23744 -15.93829 -15.69969 -15.11653 -14.82333 -14.33327 -14.22187 -13.71976 -13.59782 -13.10976 -12.66144 -12.49801 -12.49146 -12.32229 -12.13186 -11.85964 -11.47461 -11.34649 -11.00800 -10.91247 -10.86691 -10.56952 -10.53653 -9.99101 -9.79107 -9.60254 -9.14597 -9.00547 -8.79317 -8.36127 -7.31105 -5.98921 -4.00597 0.46406 1.06837 1.95771 2.46192 3.31182 3.38677 3.39642 3.44294 3.94120 4.16131 4.39126 4.44067 4.66768 4.89453 5.02588 5.13623 5.23935 5.32652 5.33402 5.43198 5.63919 5.72823 5.79549 5.90859 6.03500 6.10576 6.21232 6.30976 6.32088 6.34489 6.42677 6.53914 6.84808 7.19325 7.23295 7.23785 7.48447 7.66129 7.86538 8.24301 8.47931 8.56855 9.05156 9.63185 11.08257 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.003602 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.977440 B = 7771.197293 C = 8246.323497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.488 4.488 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.682 5.682 14 C 0.068 3.932 15 C -0.051 4.051 16 C 0.146 3.854 17 N -0.284 5.284 18 O -0.100 6.100 19 C 0.083 3.917 20 C -0.130 4.130 21 C -0.063 4.063 22 C -0.154 4.154 23 C -0.034 4.034 24 C -0.192 4.192 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.010 0.990 29 H 0.093 0.907 30 H 0.259 0.741 31 H 0.327 0.673 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.713 -3.645 19.415 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.527 4.527 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.313 5.313 14 C -0.063 4.063 15 C -0.090 4.090 16 C -0.036 4.036 17 N -0.029 5.029 18 O -0.108 6.108 19 C 0.028 3.972 20 C -0.150 4.150 21 C -0.083 4.083 22 C -0.172 4.172 23 C -0.054 4.054 24 C -0.196 4.196 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.046 0.954 28 H 0.029 0.971 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.520 -2.110 18.769 18.894 hybrid contribution -0.891 -1.193 -0.396 1.541 sum -0.371 -3.302 18.373 18.671 Atomic orbital electron populations 1.21597 0.97605 0.98725 1.00790 1.22110 0.95064 1.01042 1.00310 1.19238 0.96092 0.88635 0.85264 0.94911 1.21093 1.30520 1.11516 0.89595 0.91860 1.24922 0.95541 0.95174 0.98783 1.69892 1.38985 1.24052 1.20635 0.86509 0.78954 0.79873 0.82504 1.19710 1.21182 1.21243 1.60792 1.03595 1.63375 1.03507 1.21777 0.98243 0.95912 0.90384 1.20375 0.94128 1.03967 0.90538 1.24771 0.93950 0.90445 0.94414 1.79963 1.07167 1.16621 0.99102 1.89154 1.42075 1.39290 1.40297 1.20349 0.91297 0.90218 0.95297 1.20042 1.02121 0.95662 0.97135 1.21131 0.92693 0.95989 0.98440 1.20810 0.98908 1.00858 0.96624 1.20530 0.97504 0.91496 0.95870 1.20813 0.98696 1.01376 0.98712 0.95758 0.91156 0.95396 0.97125 0.88848 0.93150 0.85468 0.95897 0.91121 0.88116 0.89166 0.84518 0.84425 0.84828 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.40 37.16 0.35 -2.30 16 2 C -0.15 -3.31 5.51 -26.73 -0.15 -3.46 16 3 C 0.22 5.19 2.33 -68.86 -0.16 5.03 16 4 H 0.03 0.89 7.70 -51.93 -0.40 0.49 16 5 C -0.49 -12.96 7.25 -34.44 -0.25 -13.21 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -25.07 11.38 55.43 0.63 -24.44 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.68 -13.63 6.21 -107.95 -0.67 -14.30 16 14 C 0.07 1.18 5.49 -3.82 -0.02 1.16 16 15 C -0.05 -0.72 6.12 -27.88 -0.17 -0.89 16 16 C 0.15 2.15 6.72 -80.12 -0.54 1.61 16 17 N -0.28 -4.74 12.81 34.91 0.45 -4.29 16 18 O -0.10 -1.58 12.06 7.70 0.09 -1.49 16 19 C 0.08 1.11 7.48 -38.47 -0.29 0.82 16 20 C -0.13 -1.29 10.07 -39.46 -0.40 -1.69 16 21 C -0.06 -0.50 10.02 -39.54 -0.40 -0.90 16 22 C -0.15 -1.30 9.97 -39.96 -0.40 -1.70 16 23 C -0.03 -0.36 10.05 -39.62 -0.40 -0.76 16 24 C -0.19 -2.56 6.33 -105.16 -0.67 -3.22 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.59 6.85 -51.93 -0.36 1.23 16 27 H 0.03 0.49 6.63 -51.93 -0.34 0.15 16 28 H 0.01 0.21 7.50 -51.93 -0.39 -0.18 16 29 H 0.09 2.41 6.23 -51.92 -0.32 2.09 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.33 6.03 6.70 -39.29 -0.26 5.77 16 32 H 0.02 0.39 7.53 -51.93 -0.39 0.00 16 33 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 34 H 0.10 1.44 8.14 -51.92 -0.42 1.01 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -29.67 325.20 -8.58 -38.25 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.38 Total: 3.33 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -3.58 Total: -18.07 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.41 Total: -43.03 kcal Atomic # 8 Polarization: -1.58 SS G_CDS: 0.09 Total: -1.49 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.67 -8.58 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.820 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds